BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478351
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10250.1 | Symbols: | Plant protein 1589 of unknown functio... 2025 0.0
AT5G04090.2 | Symbols: | Plant protein 1589 of unknown functio... 322 6e-87
> AT3G10250.1 | Symbols: | Plant protein 1589 of unknown function
| chr3:3167951-3170931 REVERSE LENGTH=1414
Length=1414
Score = 2025 bits (1096), Expect = 0.0
Identities = 1268/1346 (94%), Gaps = 31/1346 (2%)
Strand=Plus/Plus
Query 1 GGAGTAAAGAAATTGATCCACGATCGATCAACAAAGTGAGGTTAGGTTCCATCT-CATCT 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1 GGAGTAAAGAAATTGATCCACGATCGATCAACAAAGTGAGGTTAGGTTCCATCTCCACCT 60
Query 60 CCTCTTCTCTCTCGAATCTTCTTCGATTAAAGGAACAAGGTCTGGTTTACAAAAGTCACA 119
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 61 -CT-TTCTCTCTCGAATCTTCTCCGATTAAAGGAACAAGGTCTGGTTTACAAAAGTCTCA 118
Query 120 GAGATGTCAAGTGGATCAGTGAGACGGGTTTCACGTCAAGATATACAACTCGTTCAAAAC 179
||||||| |||||| |||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 119 TAGATGTCGAGTGGAACAGTGAGAAGGGTTTCACGTCAAGATATACAACTGGTTCAAAAC 178
Query 180 CTTATAGAACGATGCCTTCAACTTTACATGAATCAGAAAGAAGTTGTAGATACTTTACTA 239
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 179 CTTATAGAACGATGCCTTCAACTTTACATGAATCAGAAAGAAGTTGTGGATACTTTACTA 238
Query 240 GAGCAGGCTAAAATCGAGCCTGGCTTCACAGAGCTAGTTTGGCAGAAGCTTGAAGAAGAG 299
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 239 GAGCAGGCTAAAATCGAGCCTGGGTTCACAGAACTAGTTTGGCAGAAGCTTGAAGAAGAG 298
Query 300 AATCGGGAGTTTTTCAAGGCTTACTATCTTAGGCTAATGGTTAAACACCAGATAATGGAG 359
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AATCGGGAGTTTTTCAAAGCTTACTATCTTAGGCTAATGGTTAAACACCAGATAATGGAA 358
Query 360 TTCAACAAGTTGCTTGAGCAGCAGGTTCACCACATGCGTCAGATGCATCCAACTGGGGTT 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 359 TTCAACAAGTTGCTTGAGCAGCAGGTTCACCACATGCGTCAGATGCATCCAACTGGTGTT 418
Query 420 GCTTCCGTCCAAAATACTAATGGTTCTCATATTCATTCAATGAATCAGAAACAATTATGC 479
||||| |||||||| || |||||||||||| |||| ||||||||||||||||||||||||
Sbjct 419 GCTTCTGTCCAAAACACAAATGGTTCTCATCTTCAATCAATGAATCAGAAACAATTATGC 478
Query 480 TATCCCTCTGAGCACACTGATCAGTCTTTGAAGTCTGAAAGTGCACATCATCCTATGGCT 539
|||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 479 TATCCCTCTGAGCACACTGACCAATCTTTGAAGTCTGAAAGTGCACATCATCCAATGGCT 538
Query 540 TCTAGTCTGTCTAATGCATTCCTAAATGGCTCTTCAACACTCAATACAAACGTGCCCTCT 599
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 539 TCTAGTCTGTCTAATGCATTCCTCAATGGCTCTTCCACACTCAATACAAACGTGCCCTCT 598
Query 600 TCTATAAACATATCAACCCATGCTAGGAGAGTTGATGCTTCTCCAAATATGCTCTCATCG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCTATAAACATATCAACCCATGCTAGGAGAGTTGATGCTTCTCCAAATATGCTCTCATCG 658
Query 660 CA--C-A------TGCCTATGGTGCAAGGAATGAATGGAGGAATGATCAAATCTGAGACT 710
|| | | |||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 659 CAGACCACAAACATGCCTATGATGCAAGGAATGAATGGAGGAATGATCAAGTCTGAGACT 718
Query 711 GCCTTTACAAACCCTGCTTCATTCATGTATGGTGGCGAACGGAATGCCCTCGAAGGACAT 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GCCTTTACAAACCCTGCTTCATTCATGTATGGTGGCGAACGGAATGCCCTCGAAGGACAT 778
Query 771 TCGGCAGTTGGGGATACTTCGATTTCTAATTTCAGTAATGAGTCCAACAACCAACCTCTC 830
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||
Sbjct 779 TCGGCAGTTGGGGATACTTCGATTCCTAATTTCAGTAACGAGTCCAACAACCAACCCCTC 838
Query 831 AGTGATACGCTTCTTGAAGCAGAAACTTCTACTATTGGGTTCTTAGGTCAAATTCCTCGT 890
|||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 839 AGTGATCCGCTTCTTGAAGCAGAAGCTTCTACTTTTGGGTTCTTAGGTCAAATTCCTCGT 898
Query 891 AACTTTAGCCTCTCTGATTTGACAGCTGATTTTTCCCAGAGCTCAGAGATTCTGGAGAGC 950
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 899 AACTTTAGCCTCTCTGATTTGACTGCTGATTTTTCTCAGAGCTCAGAGATTCTGGAGAGC 958
Query 951 TACGATAGATCACCCTTCCTTGTGGCGAATGCCGAAAACTTCCTGGACTCCCGTGAAAGA 1010
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||
Sbjct 959 TACGATAGATCACCCTTCCTTGTGCCGAATGCTGAAAACTTCCTGGACTCCCGTGACAGA 1018
Query 1011 GGAGAATATCAAGGAGACAACAAGAGGTTGGATACCATATCTGAAGGTTTCAGTTACGAT 1070
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1019 GGAGAATATCAAGGAGACAACAAGAGATTGGATACCATATCTGAAGGTTTCAGTTACGAT 1078
Query 1071 AACATTGGAAGCGAGTAGTTAGGTAATAGGTTTTGCTTTATCACTCATAACGTAGGACAC 1130
||||| || ||||||||||| |||| ||||||||||||||||||| ||||| ||||||||
Sbjct 1079 AACATCGGGAGCGAGTAGTTGGGTATTAGGTTTTGCTTTATCACTAATAACATAGGACAC 1138
Query 1131 GTTTGTGTACAAAAGATTCAGCTTTTGATGGTTTTCCTTTGCAAAGACTATTTGGTGGGG 1190
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1139 GTTTGTGTACAAAAGATTCAGCATTTGATGGTTTTCCTTTGCAAAGACTACTTGGTGGGG 1198
Query 1191 TGTATAAAAAGGGCTTTCCATTAACATTGTTACTTAAGCTTGAAGTTAGTAATAAGTTTA 1250
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGTATAAAAAGGGCTTTCTATTAACATTGTTACTTAAGCTTGAAGTTAGTAATAAGTTTA 1258
Query 1251 AGAAGA---TCATGTAATTTTCAGTGT----------CTCTTTTCTCTTGTGTTTTAGTT 1297
|||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1259 AGAAGAAGATCATGTAATTTTCAGTGTGTGATTTTGTCTCTTTTCTCTTGTGTTTTAGTT 1318
Query 1298 -T-TT----ACTTGTTACAATTGTTA 1317
| || |||||||||||||||||
Sbjct 1319 ATCTTTTTTACTTGTTACAATTGTTA 1344
> AT5G04090.2 | Symbols: | Plant protein 1589 of unknown function
| chr5:1105410-1108265 REVERSE LENGTH=1263
Length=1263
Score = 322 bits (174), Expect = 6e-87
Identities = 301/361 (83%), Gaps = 14/361 (4%)
Strand=Plus/Plus
Query 123 ATGTCAAGTGGATCAGTGAGACGGGTTTCACGTC-AAGATATACAACTCGTTCAAAACCT 181
||||||||| | |||||||| |||| || || | ||||||||||||| ||||| || ||
Sbjct 84 ATGTCAAGTTTAACAGTGAGAAGGGTATCGCG-CGAAGATATACAACTGGTTCAGAATCT 142
Query 182 TATAGAACGATGCCTTCAACTTTACATGAATCAGAAAGAAGTTGTAGATACT-TTACTAG 240
|| ||||||||||| || ||||||||||| |||||||||||||| || ||| || ||||
Sbjct 143 AATTGAACGATGCCTCCAGCTTTACATGAACCAGAAAGAAGTTGTTGACACTCTT-CTAG 201
Query 241 AGCAGGCTAAAATCGAGCCTGGCTTCACAGAGCTAGTTTGGCAGAAGCTTGAAGAAGAGA 300
| |||||||| ||||| ||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 202 AACAGGCTAAGATCGAACCTGGTTTTACAGAACTAGTTTGGCAGAAGCTTGAAGAAGAGA 261
Query 301 ATCGGGAGTTTTTCAAGGCTTACTATCTTAGGCTAATGGTTAAACACCAGATAATGGAGT 360
| || || ||||||||||| || ||||| ||||| ||||| || |||||||||||||| |
Sbjct 262 ACCGCGAATTTTTCAAGGCATATTATCTGAGGCTCATGGTGAAGCACCAGATAATGGAAT 321
Query 361 -TCAAC-AAGTTGCTTGAGCAGCAGGTTCACCACATGCGTCAGATGCATCCAACTG--GG 416
| ||| || | ||||||||||||| | |||||||||| |||||||||||||||| ||
Sbjct 322 AT-AACGAACT-GCTTGAGCAGCAGATAAACCACATGCGCCAGATGCATCCAACTGCAGG 379
Query 417 GTTGCTTCCGTCCAAAATACTAATGGTTCTCATATTC-ATTCAATGAATCAGAAACAATT 475
| ||||| || | ||| | |||||||||||| ||| | ||||||||||| |||||||
Sbjct 380 G--GCTTCTGTTCGAAACAGGAATGGTTCTCATGTTCCAC-CAATGAATCAGCAACAATT 436
Query 476 A 476
|
Sbjct 437 A 437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64808903595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5