BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478354
Length=1003
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10260.3 | Symbols: | Reticulon family protein | chr3:31712... 1199 0.0
> AT3G10260.3 | Symbols: | Reticulon family protein | chr3:3171222-3172959
REVERSE LENGTH=1386
Length=1386
Score = 1199 bits (649), Expect = 0.0
Identities = 718/752 (95%), Gaps = 2/752 (0%)
Strand=Plus/Plus
Query 176 CAGAATCATGCCTGAGAAGAACATTGTAGAGGACGTTATCGGTGATTTGGTGGATAACTT 235
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 445 CAGAATCATGCCTGACAAGAACATCGTAGAGGACGTTATCGGTGATTTGGTGGATAACTT 504
Query 236 CACGGAGACTGTTCAGAAGAACAAACATGGTTCCTCCTTCTTCGAACAAGAAGATTCCGT 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 CACGGAGACTGTTCAGAAGAACAAACATGGTTCCTCCTTCTTCGAACAAGAAGATTCCGT 564
Query 296 CAGTTCTCGTTTCAACCGTTTGTTTGGTCGTCAGAAGCCAATTCA-CAATATCTTAGGTG 354
|||||||||||||||||||||||||| ||| |||||||||||||| || | ||||||| |
Sbjct 565 CAGTTCTCGTTTCAACCGTTTGTTTGATCGCCAGAAGCCAATTCATCA-TGTCTTAGGCG 623
Query 355 GTGGTAAATCTGCTGATGTGTTGTTATGGAGGAACAAGAAGATCTCTGCAAGTGTTTTGA 414
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 GTGGCAAATCTGCTGATGTGTTGTTATGGAGGAACAAGAAGATCTCTGCAAGTGTTTTGA 683
Query 415 TGGGAGCTACTGCAATTTGGGTGCTTTTTGAATGGATCAATTTCCATTTTCTGTCTCTCC 474
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 684 TGGGAGCTACCGCAATTTGGGTGCTTTTTGAATGGATCAATTTCCATTTCCTGTCTCTCG 743
Query 475 TCTGCTACGCCCTCTTGCTTGGTATGATCGCCCAATTCGTTTGGTGTAATGCCTCAGGGT 534
| ||||| |||||||||||||||||||| || ||||||||||||| ||| ||||| || |
Sbjct 744 TTTGCTATGCCCTCTTGCTTGGTATGATTGCACAATTCGTTTGGTCTAACGCCTCTGGAT 803
Query 535 TCCTAAACCGCTCACAGTCTAGAGTGCCTCGGCTTGTTCTTCCAAAGGATTTCTTTGCTG 594
|| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 804 TCTTAAACCGCTCACAGTCTAGAGTGCCTCGCCTAGTTCTTCCAAAGGATTTCTTTGCTG 863
Query 595 AAGTAGGTGTGGCCATTGGAAAAGAAGTTAACCGCGGTTTGTTGTTTCTACAGGACTTGG 654
|||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 864 AAGTCGGTGTGGCCGTTGGAAAAGAAGTTAACCGCGGTTTGTTGTTTCTTCAGGACTTGG 923
Query 655 CTTGTAAAGGGAATATGAAACAGTTCCTCATGGCTATAATCGGACTATGGGTAGCCGCAA 714
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 924 CTTGTAAAGGGAATTTGAAACAGTTCCTCATGGCTGTAATCGGACTATGGGTAGCTGCAA 983
Query 715 TGGTTGGGAGCTGTTGCAATTTCCTAACTGTTTTGTACATCGGGTTTGTTGGGGCACACA 774
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 984 TGGTCGGGAGCTGTTGCAATTTCCTAACTGTTTTGTATATCGGGTTTGTTGGGGCACACA 1043
Query 775 CAATGCCGGTTCTGTATGAGAGATACGAAGACGAAGTGGATGGTTTTATGGATTCTCTGA 834
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1044 CAATGCCGGTTCTGTATGAGAGATACGAAGACGAAGTGGATGGTTTTATGGATTCTATGA 1103
Query 835 TCATGAAGTTTCATAGTCACTACAAGAAGCTTGATACTGGTTTTCTCAGTAGAATCCCAA 894
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1104 TCATGAAGTTTCATAGTCATTACAAGAAGCTTGATACTGGGTTTCTCAGTAGAATCCCAA 1163
Query 895 GTGGAAAGTTTGGATTAAAGAAGCGTGAGTGA 926
||||||||||||||||||||||||||||||||
Sbjct 1164 GTGGAAAGTTTGGATTAAAGAAGCGTGAGTGA 1195
Score = 215 bits (116), Expect = 7e-55
Identities = 148/163 (91%), Gaps = 4/163 (2%)
Strand=Plus/Plus
Query 1 aaaaaaaCAAtttttttGTAATTCAATTATTCGACACAACCAATCCCATCGCTTGCTCTT 60
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct 2 AAAAAAAC-ATTTTTTTGTAATTCAATTATTCGACACAACCAATCCCATCTCTTG-T-TT 58
Query 61 CACGTCCACCCTCCATCTTTCTTCGTGATTGAGAGAATCTTCAAAGAGAGACAGCTACtt 120
||| ||| |||||||||||||||||||||||||||||||||||| || ||| ||| ||||
Sbjct 59 CACTTCCGCCCTCCATCTTTCTTCGTGATTGAGAGAATCTTCAACGAAAGAAAGCAACTT 118
Query 121 ttttttGTGTGAAATTCACAAAACAACCAAGCTTCTTCTTCTT 163
||||| | |||||||||||| |||||||||| || ||||||||
Sbjct 119 TTTTTGG-GTGAAATTCACAGAACAACCAAGGTTTTTCTTCTT 160
Score = 130 bits (70), Expect = 3e-29
Identities = 75/77 (97%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 927 TTGTTAGAACAATATGGATTATGGTTTGCTAAATGAATGTTTTGAGAATATTCGTTCATT 986
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1234 TTGTTAGAACAATATGGATTATGGTTTGCTAAATGAATGTTTTGAGAATATTA-TTCATT 1292
Query 987 CATGTAGATTTTGTGTA 1003
|||||||||||||||||
Sbjct 1293 CATGTAGATTTTGTGTA 1309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49128995766
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5