BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478362
Length=1829
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10320.1 | Symbols: | Glycosyltransferase family 61 protein... 2536 0.0
> AT3G10320.1 | Symbols: | Glycosyltransferase family 61 protein
| chr3:3195314-3197346 REVERSE LENGTH=1847
Length=1847
Score = 2536 bits (1373), Expect = 0.0
Identities = 1661/1792 (93%), Gaps = 51/1792 (3%)
Strand=Plus/Plus
Query 61 tctctctatctctcgtctactctct--ct-cctctc-CCCTTACGTATCCAAGGAGATAG 116
|||||||| ||||| | | |||||| || | |||| ||||||||| |||||||||||||
Sbjct 84 TCTCTCTA-CTCTC-TTTCCTCTCTAGCTACTTCTCTCCCTTACGTCTCCAAGGAGATAG 141
Query 117 ATACACAAATTCTGTTCACAAAGAAGAAAAGTTTACTATTTCCTCTGCATACGTCTCGTC 176
|| ||||||||||||||||||| ||||| | | |||||||||||| ||||
Sbjct 142 ATTGACAAATTCTGTTCACAAAG--GAAAA----A--AGTTCCTCTGCATA-----CGTC 188
Query 177 TCTCTTTCTCTGTGTTCTTCACCTATATGACTTGAATAAGAAGTAAAGGATGAGGCAGAA 236
|||| ||||| ||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 189 TCTC--TCTCTATGTTCTTCATTTATATGACTTGAATAACAAGTAAAGGATGAGGCAGAA 246
Query 237 TCTGAAAAAAGTAGCACAGATCAAAGTAGACGAATCTCCA-AAGCTATTTCCTTATGTCT 295
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 247 TCTGAAAAAAGTAGCACAGATCAAAGTAGACGAATCT-AAGAAGCTATTTCCTTATGTCT 305
Query 296 TCCGGTTTAAAAATTCTTGTGGGAATTGCGCAAAGAGATCGAAGCCTAAACTTATTTAtc 355
||||| |||||| |||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 306 TCCGGGTTAAAACTTCTTGTGGGAATTGCGCTAAGAGATCGAAGCCTAAGCTTATCTATC 365
Query 356 ttcttctcttctctcttATCTCAAGTTGCTTTGTCTTTGCTCCTGATCTCCTCTATTTCC 415
||||| |||||||||||||||||||||||||||||||||||||| | ||||||| |||||
Sbjct 366 TTCTTATCTTCTCTCTTATCTCAAGTTGCTTTGTCTTTGCTCCTCAGCTCCTCTGTTTCC 425
Query 416 CTTATCCATCTGCTCTGTTTCTCATCGATTCTTCAATTAAAGAGATTGAAAATCGGGTTT 475
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 CTTACCCCTCTGCTCTGTTTCTCATCGATTCTTCAATTAAAGAGATTGAAAATCGGGTTT 485
Query 476 CCGAAAGCCATATAGAATCACCTAAGACGTCACAAAATGAAGAGAGCATATCTTGTGACA 535
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 486 CCGAAAGCAATATAGAATCACCTAAGACGTCACAAAAAGAAGAGAGCATATCTTGTGACA 545
Query 536 GAACCGGGTATCGTTCAGACATCTGTTTCATGAAAGGAGATATCAGAACACACTCTCCTT 595
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 546 GAACCGGCTATCGTTCAGACATCTGTTTCATGAAAGGCGATATCAGAACACACTCTCCTT 605
Query 596 CTTCCTCTAT-TATTCTCTACACCTCGAATGATCT---CACCGATAATGTCTTGCCAGAA 651
| ||||| || | |||||||||||||||||||||| ||||||| | ||||||| ||||
Sbjct 606 CCTCCTCCATCT-TTCTCTACACCTCGAATGATCTCACCACCGATCAGGTCTTGCAAGAA 664
Query 652 AAAATCAAACCATACACCAGAAAATGGGAAACAAGTATAATGGAAACCATCCATGAGCTG 711
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 665 AAAATCAAACCATACACCAGAAAATGGGAAACTAGTATAATGGAAACCATCCCTGAGCTC 724
Query 712 AAACTTGTGACAAAAGATATGAAGCGTTTTGGTGACAGGTGTAAATGTGAAGTGATCCAT 771
||||||||||||||||||||||||| |||||| |||| | ||||||| ||||||||||||
Sbjct 725 AAACTTGTGACAAAAGATATGAAGCTTTTTGGCGACAAGCGTAAATGCGAAGTGATCCAT 784
Query 772 GAAGTACCCGCTGTGCTATTCTCTACCGGAGGGTATACCGGAAACTTGTATCATGAGTTC 831
|||||||| || |||||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 785 GAAGTACCGGCCGTGCTATTCTCTACCGGAGGATATACCGGAAACCTCTATCATGAGTTC 844
Query 832 AACGACGGGCTTATTCCTCTGTATATAACATCTAAACGTTTCAACAAAAAGGTTGTCTTT 891
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 845 AACGACGGGCTTATTCCTTTGTATATAACATCTAAACGTTTCAACAAAAAGGTTGTCTTT 904
Query 892 GTGATTGCTGAGTATCACAAGTGGTGGGAGATGAAGTATGGAGATGTTCTCTCTCAGCTC 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 GTGATTGCTGAGTATCACAAGTGGTGGGAGATGAAGTATGGAGATGTTCTCTCTCAGCTC 964
Query 952 TCTGATTA-TCCTCTTATTGATTTCAGCAAAGACAAGAGAACTCACTGTTTCAAGGAAGC 1010
|||||||| || |||||| || |||| ||||||||||||||||||||| |||||||||||
Sbjct 965 TCTGATTACTC-TCTTATCGACTTCAACAAAGACAAGAGAACTCACTGCTTCAAGGAAGC 1023
Query 1011 CATTGTTGGTCTTAGAATCCATGGTGAGTTAACCGTTGATCCTTCTCAGATGCAAGATGG 1070
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1024 TATTGTTGGTCTTAGAATCCATGGTGAGTTAACCGTCGATCCTTCTCAGATGCAAGATGA 1083
Query 1071 TAGAACAACCATCAATGAGTTCAGAAATGTACTTGATCGAGCTTATGGACCCCGAATCAA 1130
| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1084 TGGAACAACCATCAATGAGTTCAGAAATGTACTTGATCGAGCTTATAGACCACGAATCAA 1143
Query 1131 CAGACTGGACAGGCTAGAGGAGCAACGGTTCCACGCAAGAGTAGCAAAGAGAAGAAAGGC 1190
||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||
Sbjct 1144 CAGACTGGACAGGCTAGAGGAGCAACGATTCCACGCAAGACTAGCACAGAGAAGAAAGGC 1203
Query 1191 TCAGAGGCCAAAACTAGCGTTGTTTTCAAGAACCGGGTCTCGAGGGATAACAAACGAGGA 1250
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 TAAGAGGCCAAAACTAGCGTTGTTTTCAAGAACCGGGTCTCGAGGGATAACAAACGAGGA 1263
Query 1251 TCTGATGGTGCAATTGGCTCAAAGGATCGGGTTTGA-AGTTGAGGTTTTGAGACCTGACA 1309
||||||||| || ||||||| |||||||||||||| | | |||||||||||||||||||
Sbjct 1264 CCTGATGGTGAAAATGGCTCAGAGGATCGGGTTTGACA-TCGAGGTTTTGAGACCTGACA 1322
Query 1310 GAACAACGGAACTGGCAAAGATTTACAGAGTGCTTAA-CTCAAGCAAAGTCATGGTTGGG 1368
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1323 GAACAACGGAACTGGCAAAGATTTACAGAGTG-TTAAACTCAAGCAAAGTCATGGTTGGG 1381
Query 1369 GTACATGGAGCAGCCATGACCCATTTTCTGTTCATGCAACCTGGAAGTATCTTTATTCAG 1428
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1382 GTACATGGAGCAGCCATGACCCATTTTCTGTTCATGAAACCTGGAAGTATCTTTATTCAG 1441
Query 1429 ATCATTCCATTGGGGACAGATTGGGCAGCAGAGACATATTATGGAGAACCGGCAAAGAAG 1488
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 ATCATTCCACTGGGAACAGATTGGGCAGCAGAGACATATTATGGAGAACCGGCAAAGAAG 1501
Query 1489 CTCGGTCTAGACTACATTGGTTATAAGATTCTTCCAAGAGAGAGCTCATTGTATGAAAAA 1548
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 CTCGGTCTAGACTACAATGGTTATAAGATTCTTCCAAGAGAGAGCTCATTGTATGAAAAA 1561
Query 1549 TATGATAAAGATGATCCAATTCTAAGAGATCCAAACAGCATCACTAAGAAAGGATGGCAA 1608
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1562 TATGATAAAGATGATCCAATTCTAAAAGATCCAAACAGCATCACTAAGAAAGGATGGCAA 1621
Query 1609 TTCACAAAGGGGATATACCTGAACGGCCAGAAAGTGAGGTTAGATCTCCATAGATTCAAG 1668
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1622 TTCACAAAGGGGATATACCTGAACGACCAGAAAGTGAGGTTAGATCTCCATAGATTCAAG 1681
Query 1669 AAGGTTTTGGTTGATGCGTATGCAAAATCGATTAGCTGACCTGAAATGAGTTCTGAAAGT 1728
||| ||||| ||||||||||||||||||||||||| |||||||||||||||| ||| |||
Sbjct 1682 AAGCTTTTGATTGATGCGTATGCAAAATCGATTAGGTGACCTGAAATGAGTTTTGAGAGT 1741
Query 1729 TTTATTTTGTTGTTGCTGTATAGTCTGCACAAACTACAGA-------G--TTCTTT--GT 1777
| | |||| |||||||||||||||||||| |||||||||| | |||||| ||
Sbjct 1742 TCT-TTTTATTGTTGCTGTATAGTCTGCATAAACTACAGAAATTACAGAGTTCTTTTTGT 1800
Query 1778 AAAGATTTAAATGAAACCGTAACATAAATGAATTCAATGTTGCAGAGACACT 1829
|||||||||||||||||| | ||||||||||||||||| ||||||||||
Sbjct 1801 AAAGATTTAAATGAAACC--A---TAAATGAATTCAATGTTTCAGAGACACT 1847
Score = 89.8 bits (48), Expect = 9e-17
Identities = 62/68 (91%), Gaps = 4/68 (6%)
Strand=Plus/Plus
Query 1 CTCTCTAAATAAATACTCTGATTTCAAAGC-ACAACGCCTTACAACAACACCCAGAAAAC 59
|||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||||
Sbjct 1 CTCTCTAAATAAATACTCTGATTTCAAAGCTAAAAC---TTACAACAACACCCACAAAAC 57
Query 60 Ttctctct 67
||||||||
Sbjct 58 TTCTCTCT 65
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90511582635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5