BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478363
Length=1294
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10330.1 | Symbols: | Cyclin-like family protein | chr3:319... 2041 0.0
> AT3G10330.1 | Symbols: | Cyclin-like family protein | chr3:3199770-3201855
FORWARD LENGTH=1289
Length=1289
Score = 2041 bits (1105), Expect = 0.0
Identities = 1235/1297 (95%), Gaps = 12/1297 (1%)
Strand=Plus/Plus
Query 1 AAAACAAATCGTTgaaaaagaaagtaagctcaaggcgcgacgaggaagaagaagaagaag 60
|||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||
Sbjct 2 AAAACAAATCGTTGAAAAAGTAAGTAAGCTCAAGGCGCGACGAGGAAAAAGACGAAGAAG 61
Query 61 --gaaagTAGCAATCTTTAGCAATCGGAGTCCAATTACTCAAAAGGGGTTTTAGGGTTTT 118
||||||| |||||||||| |||| |||||||||| | |||| | |||||||
Sbjct 62 AAGAAAGTAACAATCTTTAGTAATCAAAGTCCAATTAGTGAAAA---G-----GGGTTTT 113
Query 119 CTTGTGAG-AGAGAAAGAGAAGCTATGAGTGACGCGTTTTGTTCAGACTGTAAGAGGCAC 177
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 114 CTTGTGAGAAGAGAAAGAGAAGCTATGAGTGACGCGTTTTGTTCGGACTGTAAGAGGCAC 173
Query 178 ACGGAGGTTGTGTTTGACCATTCCGCCGGAGATACAGTTTGTTCAGAGTGTGGGCTCGTG 237
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 174 ACGGAGGTTGTGTTTGACCATTCCGCCGGAGATACAGTTTGTTCAGAGTGTGGTCTCGTG 233
Query 238 CTTGAATCGCACTCAATCGATGAAACTTCGGAGTGGCGTACCTTCGCTAATGAGTCCGGT 297
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 234 CTTGAATCTCACTCAATCGATGAAACTTCTGAGTGGCGTACTTTCGCTAATGAGTCCGGT 293
Query 298 GATAATGATCCTGTTCGTGTCGGTGGTCCGACGAATCCTCTTTTAGCTGATGGTGGTCTC 357
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 294 GATAATGATCCTGTTCGTGTCGGTGGTCCGACGAATCCTCTTTTAGCAGATGGTGGTCTC 353
Query 358 ACTACTGTCATTTCCAAACCTAATGGATCCTCTGGCGATTTCCTCTCTTCTTCTCTTGGT 417
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 ACTACTGTCATTTCTAAACCTAATGGATCCTCTGGCGATTTCCTCTCTTCTTCTCTTGGT 413
Query 418 CGATGGCAGAATCGTGGATCTAATCCCGATCGTGGCCTTATTGTTGCTTTCAAGACTATC 477
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 414 CGATGGCAGAATCGTGGATCTAATCCTGATCGTGGCCTTATTGTTGCTTTCAAGACTATC 473
Query 478 GCTACCATGGCTGATAGGTTGGGACTTGTCGCCACCATCAAGGACCGAGCGAATGAGATT 537
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 474 GCTACCATGGCTGATAGGTTGGGACTTGTTGCGACCATCAAGGACCGAGCGAATGAGATT 533
Query 538 TATAAAAGGGTCGAGGATCAGAAGTCAAGTAGAGGAAGAAATCAGGATGCTCTTTTGGCT 597
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TATAAAAGGGTAGAGGATCAGAAGTCAAGTAGAGGAAGAAATCAGGATGCTCTTTTGGCT 593
Query 598 GCCTGTTTATACATTGCTTGCCGGCAAGAAGACAAGCCACGAACTGTCAAGGAAATATGC 657
|| |||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 594 GCTTGTTTATACATTGCTTGCCGGCAAGAAGACAAACCACGGACGGTCAAGGAAATATGC 653
Query 658 TCTGTTGCCAATGGAGCTACTAAGAAGGAGATCGGTCGTGCAAAAGAGTACATAGTCAAA 717
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 654 TCTGTTGCCAATGGAGCTACTAAGAAGGAGATTGGTCGTGCAAAAGAGTACATAGTCAAA 713
Query 718 CAGTTGGGGCTCGAAACCGGACAATCAGTTGAAATGGGTACTATACATGCTGGAGATTTT 777
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 714 CAGTTGGGGCTGGAAACCGGACAATTGGTTGAAATGGGTACTATACATGCTGGAGATTTT 773
Query 778 ATGAGACGTTTTTGCTCCAATCTTGGTATGACCAACCAAACCGTGAAAGCTGCTCAAGAA 837
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 774 ATGAGACGTTTTTGCTCCAATCTTGGTATGACCAACCAAACCGTGAAAGCGGCTCAAGAG 833
Query 838 TCTGTGCAAAAATCAGAGGAATTTGATATAAGGAGGAGTCCCATATCGATTGCAGCAGCG 897
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TCTGTGCAAAAGTCAGAAGAATTTGATATAAGGAGGAGTCCCATATCGATTGCAGCAGCG 893
Query 898 GTGATATACATCATAACACAGCTCTCTGATGAGAAGAAGCCTCTCCGAGATATATCGGTG 957
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 894 GTTATATACATCATAACACAGCTCTCTGATGAGAAGAAGCCTCTTCGAGATATATCAGTG 953
Query 958 GCAACTGGAGTCGCGGAAGGAACTATAAGAAACTCTTACAAAGATCTTTACCCTCACCTT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GCAACTGGAGTCGCGGAAGGAACTATAAGAAACTCTTACAAAGATCTTTACCCTCACCTT 1013
Query 1018 TCGAAGATCATACCAGCTTGGTACGCTAAAGAAGAAGATCTCAAGAACCTTCAAAGCCCT 1077
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TCCAAGATCATACCAGCTTGGTACGCTAAAGAAGAAGATCTCAAGAACCTTCAAAGCCCT 1073
Query 1078 TGAGTGTCTTCTTCTTCTACTCTCTTACTCGCAGTCATGCCTTCGAGTTTTGATTGGGAT 1137
||||||||||| ||||||| ||||||||||||| ||| ||||| ||||| |||||||||
Sbjct 1074 TGAGTGTCTTCCTCTTCTAATCTCTTACTCGCAACCATACCTTCAAGTTTCGATTGGGAT 1133
Query 1138 TATGGGTTATAAAGTTGTTTTTGTCCAGAAGTGCGACTCGAGCCACGCTTGAACAAGAGT 1197
||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||
Sbjct 1134 TATGGGTTATAAAGTTGTTTT-GTCCAGAAGTGCGACTGGAGGCACGCTTGAACAAGAGT 1192
Query 1198 TTTACAGTAGATTTGTATCACTTTTTCTCCATAAGGTACCATACATTGTTGAATTAATGA 1257
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1193 TTTACAGTAGATTTGTATCACTTTTTCTTCATAAGGTACTATACATTGTTGAATTAATGA 1252
Query 1258 AATGGTATTTCTAGTTGATCCTACCATTTCCAGCATC 1294
||||||||||||||||||| |||||||| |||||||
Sbjct 1253 GATGGTATTTCTAGTTGATCATACCATTTTCAGCATC 1289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63654291060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5