BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478367
Length=2117
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10370.1 | Symbols: SDP6 | FAD-dependent oxidoreductase fami... 2639 0.0
> AT3G10370.1 | Symbols: SDP6 | FAD-dependent oxidoreductase family
protein | chr3:3216368-3219270 FORWARD LENGTH=2267
Length=2267
Score = 2639 bits (1429), Expect = 0.0
Identities = 1552/1609 (96%), Gaps = 18/1609 (1%)
Strand=Plus/Plus
Query 515 CTCATCGAGAATGCGCCACATCTCTGCCATGCTCTGCCCTGTATGACACCTTGTTTTGAC 574
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 585 CTCATTGAGAATGCGCCACATCTCTGTCATGCTCTGCCCTGTATGACACCTTGTTTTGAT 644
Query 575 TGGTTCGAAGTTATCTACTTCTGGATGGGTTTGAAAATGTATGATTTGGTCGCTGGACCA 634
||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||
Sbjct 645 TGGTTCGAAGTTATCTACTTCTGGATGGGGTTGAAGATGTATGACTTGGTTGCTGGACCA 704
Query 635 CGGTTATTGCATCTGTCCAGATATTACTCTGCAAAAGAGTCTATTGAGCTCTTCCCCACT 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 CGGTTATTGCATCTGTCCAGATATTACTCTGCAAAAGAGTCTATTGAGCTCTTCCCCACT 764
Query 695 CTTGCAAGGAAAGGGAAAGACAAGAATTTGAGGGGTACTGTTGTGTATTATGATGGGCAA 754
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 765 CTTGCAAGGAAAGGGAAAGACAAGAATTTGAGGGGTACTGTTGTGTATTATGACGGGCAA 824
Query 755 ATGAATGATTCACGTCTGAATGTGGGCTTGGCATGTACTGCCGCGTTAGCTGGTGCAGCC 814
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 825 ATGAACGATTCACGTCTGAATGTGGGTTTGGCATGTACTGCCGCGTTAGCTGGTGCGGCA 884
Query 815 GTTCTCAACCATGCCGAGGTTGTCTCTCTTATTACAGATGATTCTACTAAGAGAATAATT 874
|||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||
Sbjct 885 GTTCTCAACCATGCCGAGGTTGTCTCGCTTATTACTGATGATGCTACTAAGAGAATAATT 944
Query 875 GGTGCCCGAGTTCGTAACAATCTCACAGGCCAAGAATTTAACACCTATGCAAAAGTAGTT 934
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 945 GGTGCCCGAATTCGTAACAATCTCACAGGCCAAGAATTTAACAGCTATGCAAAAGTAGTT 1004
Query 935 GTTAATGCGGCAGGACCGTTCTGTGATTCCATTAGAAAAATGATTGATAAAGATACAAAA 994
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1005 GTTAATGCGGCAGGACCGTTCTGTGATTCCATTAGGAAAATGATTGATGAAGATACAAAA 1064
Query 995 CCAATGATTTGTCCAAGCAGCGGTGTACACATTGTGCTGCCTGATTACTATTCTCCTGAA 1054
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1065 CCAATGATTTGTCCAAGCAGCGGTGTACACATCGTGCTGCCTGATTACTATTCTCCTGAA 1124
Query 1055 GGGATGGGGTTGATAGTCCCTAAAACTAAGGATGGTCGCGTTGTGTTTATGTTACCATGG 1114
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1125 GGCATGGGGTTGATAGTCCCTAAAACTAAGGATGGCCGCGTTGTGTTTATGTTACCGTGG 1184
Query 1115 TTGGGAAGAACAGTAGCAGGCACTACAGACTCTAACACTTCAATCACTTCACTTCCAGAA 1174
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1185 TTGGGAAGAACAGTAGCAGGCACTACAGACTCTAATACTTCAATCACTTCACTTCCAGAA 1244
Query 1175 CCTCATGAAGATGAGATTCAATTTATACTGGATGCAATCAGCGACTATCTTAACATTAAG 1234
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1245 CCTCATGAAGATGAGATTCAATTTATACTGGACGCAATCAGCGACTATCTTAACATTAAG 1304
Query 1235 GTTCGACGTACTGATGTTCTTTCGGCTTGGAGTGGTATCCGTCCGTTGGCCATGGATCCA 1294
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1305 GTTCGACGTACTGATGTTCTTTCGGCTTGGAGTGGGATCCGTCCATTGGCCATGGATCCA 1364
Query 1295 ACAGCCAAGAGCACAGAGAGTATCTCCAGAGACCACGTTGTCTTCGAGGAAAATCCTGGT 1354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 ACAGCCAAGAGCACAGAGAGTATCTCCAGAGACCACGTTGTCTTCGAGGAAAATCCTGGT 1424
Query 1355 CTGGTTACAATCACGGGTGGAAAATGGACAACTTATCGAAGCATGGCGGAAGATGCAGTT 1414
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1425 CTGGTTACAATCACGGGTGGAAAGTGGACAACTTATCGAAGCATGGCGGAAGATGCAGTT 1484
Query 1415 GATGCAGCAATCAAATCGGGAAAACTT-AGTCCAACCAATGAATGTGTAACGCAGAAACT 1473
||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 1485 GATGCAGCAATCAAATCGGGACAACTTAAG-CCAACCAATGAATGTGTAACGCAGAAACT 1543
Query 1474 ACAGCTTCTGGGTTCTTATGGATGGGAACCATCTTCCTTCACAACTCTTGCACAGCAATA 1533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544 ACAGCTTCTGGGTTCTTATGGATGGGAACCATCTTCCTTCACAACTCTTGCACAGCAATA 1603
Query 1534 CGTGCGCATGAAGAAAACCTACGGTGGTAAAGTGGTTCCTGGAGCAATGGACACAGCTGC 1593
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 CGTGCGCATGAAGAAAACATACGGTGGTAAAGTGGTTCCTGGAGCAATGGACACAGCTGC 1663
Query 1594 TGCAAAGCATTTGTCTCATGCCTATGGTTCAATGGCTGACCGAGTTGCCACCATAGCTCA 1653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 TGCAAAGCATTTGTCTCATGCCTATGGTTCAATGGCTGACCGAGTTGCCACCATAGCTCA 1723
Query 1654 GGAGGAGGGTTTGGGGAAACGGTTGGCGCACGGGCATCCGTTTTTGGAAGCCGAGGTTGC 1713
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1724 GGAGGAGGGTTTGGGGAAACGGTTGGCGCATGGGCATCCGTTTTTGGAAGCTGAGGTTGC 1783
Query 1714 TTACTGTGCAAGGCACGAGTACTGCGAATCAGCGGTTGATTTCATAGCAAGGAGATGTAG 1773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1784 TTACTGTGCAAGGCACGAGTACTGCGAATCAGCGGTTGATTTCATAGCAAGGAGATGTAG 1843
Query 1774 AATCGCGTTCTTGGACACTGATGCAGCGGCTCGGGCGTTACAGCGTGTGGTGGAGATTCT 1833
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1844 AATCGCGTTCTTGGACACTGATGCAGCGGCTCGGGCGTTGCAGCGTGTGGTGGAGATTCT 1903
Query 1834 AGCAAGTGAACACAAGTGGGACAAGTCGAGGCAGAAGCAAGAGTTGCAAAAGGCTAAAGA 1893
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1904 AGCAAGTGAACACAAATGGGACAAGTCGAGGCAGAAGCAAGAGTTGCAAAAGGCTAAAGA 1963
Query 1894 GTTTCTTGAAACTTTCAAGTCTTCCAAAAACGCACAGTTTAACGATGGCAAGCACAACTA 1953
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1964 GTTTCTTGAAACTTTCAAGTCGTCCAAAAACGCACAGTTTAACGATGGCAAGCACAACTA 2023
Query 1954 AAGCGGCCTCTCAGAAATTTACTTACACTACT--AT-ATTGAATTTATTTATTTC-TATT 2009
||||||||||||||| |||||||||||||| | || |||||||||||| ||||| ||||
Sbjct 2024 AAGCGGCCTCTCAGAGATTTACTTACACTATTTTATTATTGAATTTATT-ATTTCCTATT 2082
Query 2010 TTCAAATTTGTTGGATTTTT-GGGTAGCGATTAGCGATTAGCGAGAACGAATAATAATAA 2068
||| ||||||||| |||||| ||||||| | | | | |||||||||||||||||| ||
Sbjct 2083 TTCCAATTTGTTGAATTTTTTGGGTAGC--T-A-C--T-AGCGAGAACGAATAATAA-AA 2134
Query 2069 TACTGTACGGATGGAATAATAATACTGCGGCTACTCATGTTTCTCGGAT 2117
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2135 --CTGTACGGATGGAATAATAATACTGCGGCTACTCATGTTTCTCGGAT 2181
Score = 811 bits (439), Expect = 0.0
Identities = 491/516 (95%), Gaps = 4/516 (1%)
Strand=Plus/Plus
Query 1 TTCGCAATCATTttcttcttcttcttcttcCCATGATCG-C-CTCGCTTCCCAACGCAAT 58
|||||||||||||||||||||||| | |||||||||||| | ||||||||||||||||||
Sbjct 41 TTCGCAATCATTTTCTTCTTCTTC-T-TTCCCATGATCGTCTCTCGCTTCCCAACGCAAT 98
Query 59 CTTCTTCACCCAATCTCTGAATCTCTCCTCAATTCCATGTCTGTCGCTTCTATTCGCCGT 118
|||||||||||||||||| |||||||||| |||||||||||| ||||||| |||||||||
Sbjct 99 CTTCTTCACCCAATCTCTAAATCTCTCCTAAATTCCATGTCTCTCGCTTCCATTCGCCGT 158
Query 119 TTAGCCGCCGGAGCCGCTGTAATTGCCGCTGCATCCGGTGGCGCTGTCTATCTGTCTCCG 178
||||| |||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 159 TTAGCTGCCGGAGCTGCCGTAATTGCCGCTGCATCCGGTGGCGCTGTCTACCTGTCTCCG 218
Query 179 TCGGTTGCCTCCAGCGACAAAGGAGGTGGTCCGATTCTAGATTCCTTGAGGCGTAGGATT 238
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 219 TCGGTTGCCTCCAGCGACAAAGGAGGTGGTCCGATTCTAGATTCGTTGAGGCGTAGGCTT 278
Query 239 GGTGATCCCACCGCTTCTGTGCCGTCTCGATCTGCTCAAGAGTCTTCTCTGATTGCAGCC 298
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 279 GGTGATCCCACCGCTTCTGTACCGTCTCGATCTGCTCAAGAGTCTGCTCTGATTGCAGCC 338
Query 299 ACTGCTTCTGATCCGCTCGATGTTCTCGTCATTGGCGGTGGAGCCACTGGTTCTGGAGTC 358
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 339 ACCGCTTCTGATCCGCTCGATGTTCTCGTCATTGGCGGTGGAGCCACCGGTTCTGGAGTT 398
Query 359 GCTCTCGACGCTGCTACACGTGGCCTCCGTGTTGGTTTGGTGGAGCGAGAGGATTTCTCC 418
||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 399 GCTCTTGACGCTGTTACACGTGGCCTCCGTGTTGGTTTGGTGGAGCGCGAGGATTTCTCC 458
Query 419 TCCGGGACTTCTTCGCGATCAACGAAGCTGATTCATGGAGGGGTTCGTTACTTGGAGAAA 478
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 459 TCTGGGACTTCTTCGCGATCTACAAAGCTGATTCATGGAGGGGTTCGTTACTTGGAGAAA 518
Query 479 GCTGTTTTCAATCTTGATTATGGACAGCTGAAGCTT 514
||||||||||||||||||||||||||||||||||||
Sbjct 519 GCTGTTTTCAATCTTGATTATGGACAGCTGAAGCTT 554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104969339595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5