BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478378

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G10460.1 | Symbols:  | Plant self-incompatibility protein S1...   525    2e-148


> AT3G10460.1 | Symbols:  | Plant self-incompatibility protein 
S1 family | chr3:3255800-3256439 FORWARD LENGTH=640
Length=640

 Score =  525 bits (284),  Expect = 2e-148
 Identities = 362/400 (91%), Gaps = 4/400 (1%)
 Strand=Plus/Plus

Query  1    ATGAAGTTAGGTGTGACAATATTTCTGATTGTTGTATGCTTATACACCGAACATGTGATA  60
            ||||||||| ||||||| ||||||||||| |||||||| |||||||||||| ||||||||
Sbjct  3    ATGAAGTTACGTGTGACGATATTTCTGATGGTTGTATGTTTATACACCGAAAATGTGATA  62

Query  61   GGAGGATCGGTGTTTATCTATAACAACCTGCACCACGGACACTATTTACAAGTGCATTGC  120
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||
Sbjct  63   GGAGGATCGGTGTTTATCTATAACAACCTGCCCCACGGACACTATTTACAAGTGAAATGC  122

Query  121  AAATCCGGAGACAGCAATCTCGGTGACCACGTGAGACGCCCCGGTGCGG-CGTACAGTTA  179
            ||||| ||||||| |||||| |||  |||||||||||| |||||| |||   |||| |||
Sbjct  123  AAATCTGGAGACACCAATCTTGGTTTCCACGTGAGACGGCCCGGT-CGGTTTTACAATTA  181

Query  180  TTCTTTCACTGATCATATATTTGGAAAAACGCTTTATTGGTGTCATCTATGGAAAGGTAA  239
              ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  182  CGCTTTCACTGATCATATACTTGGAAAAACGCTTTATTGGTGTCATCTATGGAAAGGTAA  241

Query  240  GGACTGGGAGAATCATGTGGCGATCGTTGCCTACGAAAGTAAGCAGTTGCCTCATCGCGA  299
              |||||||| ||||||||| |||||||||||||||||||| | | ||||||||||||||
Sbjct  242  AAACTGGGAGGATCATGTGGTGATCGTTGCCTACGAAAGTAGGGATTTGCCTCATCGCGA  301

Query  300  CAATTGGGTTAGATGGTCGGTCAGGGAAAATGGCATCTATCAAAATGTGAACGGTGAGGA  359
            ||||||||| || ||||||| |||||||  |||||||||||||||||| |||||||||||
Sbjct  302  CAATTGGGTGAGGTGGTCGGCCAGGGAATCTGGCATCTATCAAAATGTTAACGGTGAGGA  361

Query  360  GA-ATTACCATTTCAGGTATAATTGGGATGGTCACGTTTA  398
            || ||| || ||||||||||||||||||||||||||||||
Sbjct  362  GAGATT-CCGTTTCAGGTATAATTGGGATGGTCACGTTTA  400



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25418478382


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5