BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478379
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10470.1 | Symbols: | C2H2-type zinc finger family protein ... 2128 0.0
AT5G04390.1 | Symbols: | C2H2-type zinc finger family protein ... 348 1e-94
> AT3G10470.1 | Symbols: | C2H2-type zinc finger family protein
| chr3:3260351-3261854 FORWARD LENGTH=1504
Length=1504
Score = 2128 bits (1152), Expect = 0.0
Identities = 1352/1443 (94%), Gaps = 35/1443 (2%)
Strand=Plus/Plus
Query 1 ATCTCTCTATATAGC-CAATGGAAGCAGCTGCGGAGGCTGTATCAGCCGCTAGGGAGCAA 59
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 ATCTCTCTATATA-CTCAATGGAAGCAGCTGCGGAGGCTGTATCAGCCGCTAGGGAGCAA 115
Query 60 TCATTGATCCTTAAAGGGAAACGGACTAAGCGGCAACGTCCGCAGTCCCCAATCCCTTTC 119
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 116 TCATTGATCCTTAAAGGGAAACGGACTAAGCGGCAACGTCCTCAGTCCCCAATCCCTTTC 175
Query 120 TCTATCATCCCTCCTTTGTCTTCGCATGAACCGGATGCTGAAGAAGAGTCCACTAGTCTT 179
|||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 176 TCTATCATTCCTCCTATGTCTTCGCATGAACCGGATGCTGAAGAAGAGTCTACTAGTCTT 235
Query 180 ATTTCCAAGGAGAAGAGTCTCAATGATGAGATCAACAACAATAACAACAAGAATGATAAC 239
|||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||
Sbjct 236 GTTTCCAAGGAGAAGAGTCTCAATGATGAAATCAACAACAATAACATCAAGAATAATAAC 295
Query 240 AATACTTTGATCAATGATGTTACATCTTCATCTTCTGCCTCTTCATCTTCCAACAAAAAT 299
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 296 AATACTTTGATCAATGGTGTTACATCTTCATCTTCTGCCTCTTCATCTTCCAACAACAAT 355
Query 300 GCCACATTAAAGGCCACGGCTGACGAGGAAGATCAAGATATGGCTAATTGTTTGATCCTT 359
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 356 GCCACATTAAAGGCCACGGCTGACGAAGAAGATCAAGATATGGCTAATTGTTTGATCCTC 415
Query 360 CTCGCCCAAGGCCACTCTCTTCCCCACCACCAACCGCAACCGCACCCGCAACAACAAACA 419
||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 416 CTCGCCCAAGGTCACTCTCTTCCCCACCTCCAACCGCAACCGCACCCCCAACAACAAACA 475
Query 420 AGACAGCTTATGATAAGTTACCAGGAATCCGGTAATAACAACAAC---GCGTATAGATCT 476
|||||||||||||| |||||||| || |||||||| ||||||||| ||||||||||||
Sbjct 476 AGACAGCTTATGATGAGTTACCAAGATTCCGGTAACAACAACAACAATGCGTATAGATCT 535
Query 477 AGCAGCAGGAGGTTTCTAGAGACATCTTCATCTAATGGGACCACAACGAATGGTGGTGGA 536
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 536 AGCAGCAGGAGGTTTCTAGAGACATCTTCATCTAACGGGACCACAACGAACGGTGGTGGA 595
Query 537 GGCAAAGCTGGTTACTATGTTTACCAGTGCAAAACATGTGACCGGACTTTTCCGTCTTTC 596
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GGCAGAGCCGGTTACTATGTTTACCAGTGCAAAACATGTGACCGGACTTTTCCGTCTTTC 655
Query 597 CAAGCTCTTGGCGGCCATAGAGCCAGCCACAAGAAGCCTAAAGCCGCCACGGGTCTTCAC 656
||||||||||| || |||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 656 CAAGCTCTTGGTGGGCATAGAGCCAGCCACAAGAAGCCTAAAGCCGCTATGGGTCTTCAC 715
Query 657 TCCAACCATGACCACAAGAAATCTATCTACGATGACGCCGTTTCTCTCCATCTCAACAAC 716
|| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 716 TCTAACCATGACCACAAGAAGTCTAACTACGATGACGCCGTTTCTCTCCATCTCAACAAC 775
Query 717 GTTATCACCACAACTCCTAACAACAATAGTAACCATAGATCGCTTGTGGCATACGGTAAA 776
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 776 GTTCTCACCACAACTCCTAACAACAATAGTAACCATAGATCGCTTGTGGTATACGGCAAA 835
Query 777 GCTAGTAATAATAAGGTCCATGAATGTGGGATATGTGGAGCCGAATTCACATCCGGGCAA 836
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GGTAGTAATAATAAGGTCCATGAATGTGGGATATGTGGAGCCGAATTCACATCCGGGCAA 895
Query 837 GCATTAGGTGGTCACATGAGACGCCATAGAGGTGCAGTGGTGGCCGCAGCAGCCGCCTCT 896
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 896 GCATTAGGTGGTCACATGAGACGCCATAGAGGTGCAGTGGTAGCCGCAGCAGCCGCCTCT 955
Query 897 ACCGCCACAGTAGCGGTTGCAGCCACTCAGGCTACTGCAAACACGGCTTTGTCATTGTCG 956
|||||||| ||| ||||||| |||| || |||||||||||||||||||||||||||||||
Sbjct 956 ACCGCCACCGTATCGGTTGCGGCCATTCCGGCTACTGCAAACACGGCTTTGTCATTGTCG 1015
Query 957 CCTATGTCGTTTGATCAGATGTCGGATGGTCCGGTTCAGGCTCCGGTTAAGAGAGCAAGG 1016
|| ||||||||||||||||||||||| ||||| |||||||||| ||||||||||| |||
Sbjct 1016 CCAATGTCGTTTGATCAGATGTCGGAGGGTCCAATTCAGGCTCCCGTTAAGAGAGCGAGG 1075
Query 1017 AGCGCGGTTGTGTCGTTAGATTTAGATCTGAATCTACCTGCCCCGGAAGATGAGAATCGG 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 AGCGCGGTTGTGTCGTTAGATTTAGATCTGAATCTACCTGCCCCGGAAGATGAGAATCGG 1135
Query 1077 GTCAACGGATTAAGCTTTGCTTCAAAGcaagaacacgaacaagaacatgaacaaacacaa 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GTCAACGGATTAAGCTTTGCTTCAAAGCAAGAACACGAACAAGAACATGAACAAACACAA 1195
Query 1137 cagaagaaacagagagaagaacaaaagTCTCTTGTCTTGTCATCCCCTCCTACATTGGTG 1196
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1196 CAGAAGAAACAGAGAGAAGAACAAAAGTCTCTTGTCTTGTCTTCTGCTCCTACATTGGTG 1255
Query 1197 GATTGCCATTACTGAAATCAAAATTCA--AA-A--T--T---------T-AAGCAGAAAT 1239
||||||||||||| ||||||||||||| || | | | | ||||||||||
Sbjct 1256 GATTGCCATTACTAAAATCAAAATTCATTAATACCTAATCAAACAAAATTAAGCAGAAAT 1315
Query 1240 TGATGAACCAGTTTTT-AAGAAAGTTACTGATTCCTTGCTTTGTACAAGACTTGCAAGAT 1298
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TGATGAACCATTTTTTTAAGAAAGTTACTGATTCCTTGCTTTGTACAAGACTTGCAAGAT 1375
Query 1299 TCTTCTCTCTCTCtttttttttttCCTTTCTTACTTCCTTAATTTCCTAAG-AAAA-CTA 1356
|||||||||| | |||||| |||||||||||||||||||||| ||| |||| | |
Sbjct 1376 TCTTCTCTCT-T-TTTTTT-----CCTTTCTTACTTCCTTAATTTCA-AAGGAAAAACCA 1427
Query 1357 AATATTATACAATTATATATACTCCCATTAGGCATAATGCAGATGCTTTGTAACTACATC 1416
||||||||||| ||||||||||||||||||||||| |||| ||||||||||| ||||||
Sbjct 1428 TATATTATACAAATATATATACTCCCATTAGGCATA-TGCA-ATGCTTTGTAATTACATC 1485
Query 1417 CAA 1419
|||
Sbjct 1486 CAA 1488
> AT5G04390.1 | Symbols: | C2H2-type zinc finger family protein
| chr5:1239100-1240517 FORWARD LENGTH=1418
Length=1418
Score = 348 bits (188), Expect = 1e-94
Identities = 600/783 (77%), Gaps = 91/783 (12%)
Strand=Plus/Plus
Query 456 AACAACAACGCGTATAGATCTAGCAGCAGGAGGTTTCTAGAGACATCTTCATCTAATGGG 515
||||||||| ||||||||| || |||||||||||||||||| | | |||| ||| |
Sbjct 439 AACAACAACACGTATAGATTTACCAGCAGGAGGTTTCTAGA-A-A-CTTCTTCT--T--- 490
Query 516 ACCACAACGAATGGTGGTGGAGGCAAAGCTGGTTACTATGTTTACCAGTGCAAAACATGT 575
| ||| | |||||||| ||||| |||||||| ||||| |||||||| ||||||
Sbjct 491 --C-TAAC--A--GTGGTGGA---AAAGCCGGTTACTACGTTTATCAGTGCAAGACATGT 540
Query 576 GACCGGACTTTTCCGTCTTTCCAAGCTCTT-GGCGGCCATAGAGCCAGCCACAAGAAGCC 634
|||||||| || || ||||| || ||| || || ||||| ||||| ||||||||||| ||
Sbjct 541 GACCGGACCTTCCCTTCTTTTCAGGCT-TTAGGTGGCCACAGAGCTAGCCACAAGAAACC 599
Query 635 TAAAGCCGCCACGGGTCTTCACTCCAACCATGACCACAAG-A-AA-TC-TAT-CTACGAT 689
|||||||||| | | || ||||||||| ||||| |||| | || | ||| | | |
Sbjct 600 TAAAGCCGCCTC---TTTTTACTCCAACCTTGACCTCAAGAAGAACACGTATGC-A-AAC 654
Query 690 GACGCCGTTTCTCTCCATCTCAACAACGTTATC-ACCACAACTCCTAACAACAATAGTAA 748
||||||||||| || | | || || | | ||||||||| | ||| || | |||
Sbjct 655 GACGCCGTTTCACT---TGT--AC-AC---A-CAACCACAACTGTTTTCAAGAACAATAA 704
Query 749 CCA-TAGATCGCTTGTGGCATACGGTAAAGCTAGTAATAATAAGGTCCATGAATGTGGGA 807
|| |||||| ||||| | |||||||| || ||||| |||||||| ||||||||||| |
Sbjct 705 -CAGTAGATCACTTGTCGTGTACGGTAAGGCAAGTAAAAATAAGGTTCATGAATGTGGAA 763
Query 808 TATGTGGAGCCGAATTCACATCCGGGCAAGCATTAGGTGGTCACATGAGACGCCATAGAG 867
| ||||||||||| || || ||||| ||||| |||||||| ||||||||||| |||||||
Sbjct 764 TCTGTGGAGCCGAGTTTACGTCCGGACAAGCCTTAGGTGGCCACATGAGACGGCATAGAG 823
Query 868 GTGCAGTGG-TG-GCCGCAGCAGCCGCCT-CTA-CCGCCACAGTAG-CGGTTGCAGCCAC 922
| || |||| || ||| || | | | || || |||| || | ||| || ||||
Sbjct 824 GAGCTGTGGTTGTTCCG--GC-G--G--TGATAGCCCCCACCGT-GACGG-TG--GCCA- 871
Query 923 TCAGGCTACTGCAAACACGGCTTTGTCATTGTCGCCTATGTCGTTTGATCAGATGTCGGA 982
| |||| | || ||||||| | ||| |||| | |||||||| ||||| || |||||
Sbjct 872 -C-GGCTGCGGCCAACACGGAGCTATCACTGTCTTCGATGTCGTTCGATCAAATATCGGA 929
Query 983 TGGTC--C-GG-T--TCAGGC--T-CC-G-G-TTAAGAGAGCAAGGAGCGCGGTTGTGTC 1030
|||| | || | || ||| | || | | |||| ||| |||| |||| |||||
Sbjct 930 CGGTCATCAGGATCATCTGGCGATGCCAGCGAAAAAGAAAGCTAGGA---CGGTCGTGTC 986
Query 1031 GTTAGATTTAGATCTGAATCTACCTGCCCCGGAAGATGAGAATCGGGTCAACGGATTAAG 1090
| ||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 987 ACTGGATTTGGATCTGAATCTACCAGCACCGGAAGATGAGAATCGGGTCAACGGATTCAG 1046
Query 1091 CTTTGCTTCAAAGcaagaa-cacgaacaagaacatgaacaaacacaacagaagaaacaga 1149
|||||||||||||||| || ||||||||||||||| ||| || || |||| || |||
Sbjct 1047 CTTTGCTTCAAAGCAA-AATCACGAACAAGAACAT---CAA-CAGAA--GAAGCAA-AGA 1098
Query 1150 gagaagaacaaaagTCTCTTGTCTTGTCATCCCCTCCTACATTGGTGGATTGCCATTACT 1209
|| | |||| |||||||||||||||||| | | |||||| |||||||||||||| ||||
Sbjct 1099 GA-A-GAACCAAAGTCTCTTGTCTTGTC-TGC--TCCTACTTTGGTGGATTGCCACTACT 1153
Query 1210 GAA 1212
|||
Sbjct 1154 GAA 1156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69929359185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5