BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478379 Length=1419 Score E Sequences producing significant alignments: (Bits) Value AT3G10470.1 | Symbols: | C2H2-type zinc finger family protein ... 2128 0.0 AT5G04390.1 | Symbols: | C2H2-type zinc finger family protein ... 348 1e-94 > AT3G10470.1 | Symbols: | C2H2-type zinc finger family protein | chr3:3260351-3261854 FORWARD LENGTH=1504 Length=1504 Score = 2128 bits (1152), Expect = 0.0 Identities = 1352/1443 (94%), Gaps = 35/1443 (2%) Strand=Plus/Plus Query 1 ATCTCTCTATATAGC-CAATGGAAGCAGCTGCGGAGGCTGTATCAGCCGCTAGGGAGCAA 59 ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 57 ATCTCTCTATATA-CTCAATGGAAGCAGCTGCGGAGGCTGTATCAGCCGCTAGGGAGCAA 115 Query 60 TCATTGATCCTTAAAGGGAAACGGACTAAGCGGCAACGTCCGCAGTCCCCAATCCCTTTC 119 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 116 TCATTGATCCTTAAAGGGAAACGGACTAAGCGGCAACGTCCTCAGTCCCCAATCCCTTTC 175 Query 120 TCTATCATCCCTCCTTTGTCTTCGCATGAACCGGATGCTGAAGAAGAGTCCACTAGTCTT 179 |||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 176 TCTATCATTCCTCCTATGTCTTCGCATGAACCGGATGCTGAAGAAGAGTCTACTAGTCTT 235 Query 180 ATTTCCAAGGAGAAGAGTCTCAATGATGAGATCAACAACAATAACAACAAGAATGATAAC 239 |||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||| Sbjct 236 GTTTCCAAGGAGAAGAGTCTCAATGATGAAATCAACAACAATAACATCAAGAATAATAAC 295 Query 240 AATACTTTGATCAATGATGTTACATCTTCATCTTCTGCCTCTTCATCTTCCAACAAAAAT 299 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 296 AATACTTTGATCAATGGTGTTACATCTTCATCTTCTGCCTCTTCATCTTCCAACAACAAT 355 Query 300 GCCACATTAAAGGCCACGGCTGACGAGGAAGATCAAGATATGGCTAATTGTTTGATCCTT 359 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 356 GCCACATTAAAGGCCACGGCTGACGAAGAAGATCAAGATATGGCTAATTGTTTGATCCTC 415 Query 360 CTCGCCCAAGGCCACTCTCTTCCCCACCACCAACCGCAACCGCACCCGCAACAACAAACA 419 ||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 416 CTCGCCCAAGGTCACTCTCTTCCCCACCTCCAACCGCAACCGCACCCCCAACAACAAACA 475 Query 420 AGACAGCTTATGATAAGTTACCAGGAATCCGGTAATAACAACAAC---GCGTATAGATCT 476 |||||||||||||| |||||||| || |||||||| ||||||||| |||||||||||| Sbjct 476 AGACAGCTTATGATGAGTTACCAAGATTCCGGTAACAACAACAACAATGCGTATAGATCT 535 Query 477 AGCAGCAGGAGGTTTCTAGAGACATCTTCATCTAATGGGACCACAACGAATGGTGGTGGA 536 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 536 AGCAGCAGGAGGTTTCTAGAGACATCTTCATCTAACGGGACCACAACGAACGGTGGTGGA 595 Query 537 GGCAAAGCTGGTTACTATGTTTACCAGTGCAAAACATGTGACCGGACTTTTCCGTCTTTC 596 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 596 GGCAGAGCCGGTTACTATGTTTACCAGTGCAAAACATGTGACCGGACTTTTCCGTCTTTC 655 Query 597 CAAGCTCTTGGCGGCCATAGAGCCAGCCACAAGAAGCCTAAAGCCGCCACGGGTCTTCAC 656 ||||||||||| || |||||||||||||||||||||||||||||||| | |||||||||| Sbjct 656 CAAGCTCTTGGTGGGCATAGAGCCAGCCACAAGAAGCCTAAAGCCGCTATGGGTCTTCAC 715 Query 657 TCCAACCATGACCACAAGAAATCTATCTACGATGACGCCGTTTCTCTCCATCTCAACAAC 716 || ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 716 TCTAACCATGACCACAAGAAGTCTAACTACGATGACGCCGTTTCTCTCCATCTCAACAAC 775 Query 717 GTTATCACCACAACTCCTAACAACAATAGTAACCATAGATCGCTTGTGGCATACGGTAAA 776 ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| Sbjct 776 GTTCTCACCACAACTCCTAACAACAATAGTAACCATAGATCGCTTGTGGTATACGGCAAA 835 Query 777 GCTAGTAATAATAAGGTCCATGAATGTGGGATATGTGGAGCCGAATTCACATCCGGGCAA 836 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 836 GGTAGTAATAATAAGGTCCATGAATGTGGGATATGTGGAGCCGAATTCACATCCGGGCAA 895 Query 837 GCATTAGGTGGTCACATGAGACGCCATAGAGGTGCAGTGGTGGCCGCAGCAGCCGCCTCT 896 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 896 GCATTAGGTGGTCACATGAGACGCCATAGAGGTGCAGTGGTAGCCGCAGCAGCCGCCTCT 955 Query 897 ACCGCCACAGTAGCGGTTGCAGCCACTCAGGCTACTGCAAACACGGCTTTGTCATTGTCG 956 |||||||| ||| ||||||| |||| || ||||||||||||||||||||||||||||||| Sbjct 956 ACCGCCACCGTATCGGTTGCGGCCATTCCGGCTACTGCAAACACGGCTTTGTCATTGTCG 1015 Query 957 CCTATGTCGTTTGATCAGATGTCGGATGGTCCGGTTCAGGCTCCGGTTAAGAGAGCAAGG 1016 || ||||||||||||||||||||||| ||||| |||||||||| ||||||||||| ||| Sbjct 1016 CCAATGTCGTTTGATCAGATGTCGGAGGGTCCAATTCAGGCTCCCGTTAAGAGAGCGAGG 1075 Query 1017 AGCGCGGTTGTGTCGTTAGATTTAGATCTGAATCTACCTGCCCCGGAAGATGAGAATCGG 1076 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1076 AGCGCGGTTGTGTCGTTAGATTTAGATCTGAATCTACCTGCCCCGGAAGATGAGAATCGG 1135 Query 1077 GTCAACGGATTAAGCTTTGCTTCAAAGcaagaacacgaacaagaacatgaacaaacacaa 1136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1136 GTCAACGGATTAAGCTTTGCTTCAAAGCAAGAACACGAACAAGAACATGAACAAACACAA 1195 Query 1137 cagaagaaacagagagaagaacaaaagTCTCTTGTCTTGTCATCCCCTCCTACATTGGTG 1196 ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 1196 CAGAAGAAACAGAGAGAAGAACAAAAGTCTCTTGTCTTGTCTTCTGCTCCTACATTGGTG 1255 Query 1197 GATTGCCATTACTGAAATCAAAATTCA--AA-A--T--T---------T-AAGCAGAAAT 1239 ||||||||||||| ||||||||||||| || | | | | |||||||||| Sbjct 1256 GATTGCCATTACTAAAATCAAAATTCATTAATACCTAATCAAACAAAATTAAGCAGAAAT 1315 Query 1240 TGATGAACCAGTTTTT-AAGAAAGTTACTGATTCCTTGCTTTGTACAAGACTTGCAAGAT 1298 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1316 TGATGAACCATTTTTTTAAGAAAGTTACTGATTCCTTGCTTTGTACAAGACTTGCAAGAT 1375 Query 1299 TCTTCTCTCTCTCtttttttttttCCTTTCTTACTTCCTTAATTTCCTAAG-AAAA-CTA 1356 |||||||||| | |||||| |||||||||||||||||||||| ||| |||| | | Sbjct 1376 TCTTCTCTCT-T-TTTTTT-----CCTTTCTTACTTCCTTAATTTCA-AAGGAAAAACCA 1427 Query 1357 AATATTATACAATTATATATACTCCCATTAGGCATAATGCAGATGCTTTGTAACTACATC 1416 ||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||| Sbjct 1428 TATATTATACAAATATATATACTCCCATTAGGCATA-TGCA-ATGCTTTGTAATTACATC 1485 Query 1417 CAA 1419 ||| Sbjct 1486 CAA 1488 > AT5G04390.1 | Symbols: | C2H2-type zinc finger family protein | chr5:1239100-1240517 FORWARD LENGTH=1418 Length=1418 Score = 348 bits (188), Expect = 1e-94 Identities = 600/783 (77%), Gaps = 91/783 (12%) Strand=Plus/Plus Query 456 AACAACAACGCGTATAGATCTAGCAGCAGGAGGTTTCTAGAGACATCTTCATCTAATGGG 515 ||||||||| ||||||||| || |||||||||||||||||| | | |||| ||| | Sbjct 439 AACAACAACACGTATAGATTTACCAGCAGGAGGTTTCTAGA-A-A-CTTCTTCT--T--- 490 Query 516 ACCACAACGAATGGTGGTGGAGGCAAAGCTGGTTACTATGTTTACCAGTGCAAAACATGT 575 | ||| | |||||||| ||||| |||||||| ||||| |||||||| |||||| Sbjct 491 --C-TAAC--A--GTGGTGGA---AAAGCCGGTTACTACGTTTATCAGTGCAAGACATGT 540 Query 576 GACCGGACTTTTCCGTCTTTCCAAGCTCTT-GGCGGCCATAGAGCCAGCCACAAGAAGCC 634 |||||||| || || ||||| || ||| || || ||||| ||||| ||||||||||| || Sbjct 541 GACCGGACCTTCCCTTCTTTTCAGGCT-TTAGGTGGCCACAGAGCTAGCCACAAGAAACC 599 Query 635 TAAAGCCGCCACGGGTCTTCACTCCAACCATGACCACAAG-A-AA-TC-TAT-CTACGAT 689 |||||||||| | | || ||||||||| ||||| |||| | || | ||| | | | Sbjct 600 TAAAGCCGCCTC---TTTTTACTCCAACCTTGACCTCAAGAAGAACACGTATGC-A-AAC 654 Query 690 GACGCCGTTTCTCTCCATCTCAACAACGTTATC-ACCACAACTCCTAACAACAATAGTAA 748 ||||||||||| || | | || || | | ||||||||| | ||| || | ||| Sbjct 655 GACGCCGTTTCACT---TGT--AC-AC---A-CAACCACAACTGTTTTCAAGAACAATAA 704 Query 749 CCA-TAGATCGCTTGTGGCATACGGTAAAGCTAGTAATAATAAGGTCCATGAATGTGGGA 807 || |||||| ||||| | |||||||| || ||||| |||||||| ||||||||||| | Sbjct 705 -CAGTAGATCACTTGTCGTGTACGGTAAGGCAAGTAAAAATAAGGTTCATGAATGTGGAA 763 Query 808 TATGTGGAGCCGAATTCACATCCGGGCAAGCATTAGGTGGTCACATGAGACGCCATAGAG 867 | ||||||||||| || || ||||| ||||| |||||||| ||||||||||| ||||||| Sbjct 764 TCTGTGGAGCCGAGTTTACGTCCGGACAAGCCTTAGGTGGCCACATGAGACGGCATAGAG 823 Query 868 GTGCAGTGG-TG-GCCGCAGCAGCCGCCT-CTA-CCGCCACAGTAG-CGGTTGCAGCCAC 922 | || |||| || ||| || | | | || || |||| || | ||| || |||| Sbjct 824 GAGCTGTGGTTGTTCCG--GC-G--G--TGATAGCCCCCACCGT-GACGG-TG--GCCA- 871 Query 923 TCAGGCTACTGCAAACACGGCTTTGTCATTGTCGCCTATGTCGTTTGATCAGATGTCGGA 982 | |||| | || ||||||| | ||| |||| | |||||||| ||||| || ||||| Sbjct 872 -C-GGCTGCGGCCAACACGGAGCTATCACTGTCTTCGATGTCGTTCGATCAAATATCGGA 929 Query 983 TGGTC--C-GG-T--TCAGGC--T-CC-G-G-TTAAGAGAGCAAGGAGCGCGGTTGTGTC 1030 |||| | || | || ||| | || | | |||| ||| |||| |||| ||||| Sbjct 930 CGGTCATCAGGATCATCTGGCGATGCCAGCGAAAAAGAAAGCTAGGA---CGGTCGTGTC 986 Query 1031 GTTAGATTTAGATCTGAATCTACCTGCCCCGGAAGATGAGAATCGGGTCAACGGATTAAG 1090 | ||||| |||||||||||||| || ||||||||||||||||||||||||||||| || Sbjct 987 ACTGGATTTGGATCTGAATCTACCAGCACCGGAAGATGAGAATCGGGTCAACGGATTCAG 1046 Query 1091 CTTTGCTTCAAAGcaagaa-cacgaacaagaacatgaacaaacacaacagaagaaacaga 1149 |||||||||||||||| || ||||||||||||||| ||| || || |||| || ||| Sbjct 1047 CTTTGCTTCAAAGCAA-AATCACGAACAAGAACAT---CAA-CAGAA--GAAGCAA-AGA 1098 Query 1150 gagaagaacaaaagTCTCTTGTCTTGTCATCCCCTCCTACATTGGTGGATTGCCATTACT 1209 || | |||| |||||||||||||||||| | | |||||| |||||||||||||| |||| Sbjct 1099 GA-A-GAACCAAAGTCTCTTGTCTTGTC-TGC--TCCTACTTTGGTGGATTGCCACTACT 1153 Query 1210 GAA 1212 ||| Sbjct 1154 GAA 1156 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69929359185 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5