BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478386
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10525.1 | Symbols: LGO, SMR1 | LOSS OF GIANT CELLS FROM ORG... 1048 0.0
> AT3G10525.1 | Symbols: LGO, SMR1 | LOSS OF GIANT CELLS FROM ORGANS
| chr3:3281362-3282032 REVERSE LENGTH=671
Length=671
Score = 1048 bits (567), Expect = 0.0
Identities = 638/671 (95%), Gaps = 9/671 (1%)
Strand=Plus/Plus
Query 1 AAGAAGTTTTCTCTCCATCCAC---ACaaaaaaaGTTTCCCAAATAAC-AAAACACACAC 56
|||||||||||||| ||||||| | ||||||||||||||||| ||| |||||| ||||
Sbjct 1 AAGAAGTTTTCTCTACATCCACAAAAGAAAAAAAGTTTCCCAAAAAACAAAAACATACAC 60
Query 57 AAGTTTAGATATGGATCTTGAGTTATTACAAGATTTGTCCAAATTCAATTTCCCAACACC 116
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 61 AAGTTTAGATATGGATCTTGAATTACTACAAGATTTGTCCAAATTCAATTTCCCAACACC 120
Query 117 CATCAAGATCCGATCCAAAACCTCAAAAACCAAGAAGGACGAAGGTGATGACGACGAAGA 176
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 CATCAAGATCCGATCCAAAACCTCAAAAACAAAGAAGGACGAAGGTGATGACGACGAAGA 180
Query 177 TGGCCTCAGCTGCAGCACACCCACATCCCAAGAACACAAGATTCCCGCCGTCGTAGACTC 236
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGACCTCCGCTGCAGCACACCCACATCCCAAGAACACAAGATTCCCGCCGTCGTAGACTC 240
Query 237 TCCACCTCCCCCGCCGCGAAAACCCCGACCACCACCGTCAGCACCGTCGGCTACGGCGGC 296
||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 TCCACCTCCTCCGCCGAGAAAACCCCGGCCACCACCGTCAGCACCGTCGGCTACGGCGGC 300
Query 297 TCTGATGATCAGATCGTGCAAGAGGAAGCTTTTAGTGTCTACTTGTGAGATAATCATGAA 356
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 301 TCTGATGATCAGATCGTGCAAGAGGAAGCTTTTAGTGTCGACTTGTGAGATAATCATGAA 360
Query 357 TCGGGAAGAGATTGACCGTTTCTTCTCCTCCGTATACAATGAGACGTCGACTACGGCTAA 416
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 TCGGGAAGAGATTGACCGTTTCTTCTCCTCCGTCTACAATGAGACGTCGACTACGGCTAA 420
Query 417 AAGGCGGAGAAGTTATCCATATTGTGCTCGAAGATGAGGCTTAATTCAATATTTACATTT 476
| ||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||
Sbjct 421 ACGGCGGAGAAGTTACCCTTATTGTTCTCGAAGATGAGGCTTAATTCAATATTTACATTT 480
Query 477 TTT-ACAGTTTTACTGGAaatattgtgaaattaattttatgttggtgtttgattttaa-t 534
||| |||||||||||||||||||||||||||||||| | |||||||||| | |||||| |
Sbjct 481 TTTTACAGTTTTACTGGAAATATTGTGAAATTAATTATCTGTTGGTGTTCGGTTTTAAAT 540
Query 535 atttttaatttaattatgaatatGGATGGATAATTTCCCTGCAACCGC--ATATTAATTT 592
|||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||
Sbjct 541 ATTTTTAATTTAATTATGAATATGGATGGATAATTTTC-TGCAACCGCGCATATTAATTT 599
Query 593 CGCATGGAGGGGTCGATGTTGTAAATTGAGTAATAAATGAAATTTAATTCCAATTGCCAA 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CGCATGGAGGGGTCGATGTTGTAAATTGAGTAATAAATGAAATTTAATTCCAATTGCCAA 659
Query 653 GATTTCTATAC 663
| |||||||||
Sbjct 660 GTTTTCTATAC 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32049385786
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5