BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478388
Length=1844
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10530.1 | Symbols: | Transducin/WD40 repeat-like superfami... 3014 0.0
AT3G23850.1 | Symbols: | unknown protein; Has 7 Blast hits to ... 111 2e-23
> AT3G10530.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:3285892-3288880 FORWARD LENGTH=2036
Length=2036
Score = 3014 bits (1632), Expect = 0.0
Identities = 1760/1822 (97%), Gaps = 7/1822 (0%)
Strand=Plus/Plus
Query 1 AAAA-ATACAAAACCCTCAAATTCAGTCAACCAGCGAGGATCGATGTCGGAGCTCACAGT 59
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 9 AAAATATACAAAACCCTCAAATTCAGTCTACCAGCGAGGATCGATGTCGGAGCTCACAGT 68
Query 60 ATCTCCTTTCACGCATTAACTCAATTTATCTGCTAAACCCTAAATAGCTTCACACCGTTT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 69 ATCTCCTTTCACGCATTAACTCAATTTATCTGCTAAACCCTAAATAGCTTCACGCCGTTT 128
Query 120 TTCTAATTCTCAATCAAATCTTCACCGCCGCCGTGTGTTGTTCTTTCTCCGAGCT-GTGT 178
|||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||
Sbjct 129 TTCTAATTCTCAATCAAAGCTTCACCGCCGCCGTGTGTTGTTCTTTCTCCGAG-TCGTGT 187
Query 179 TCCCTATTCTCAGGTGATAAGGATCAAGATGGAGATGAGTTCAGAGGATAACAATCTTAT 238
|| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 188 TCTCTAATCTCAGGTGATAAGGATCAAGATGGAGATTAGTTCAGAGGATAACAATCTTAT 247
Query 239 GGAGAAAGTTTTGCCTCCTGTTGAGCAGGAGAGTGATGTTGAGTTGGAGACTAAAGTTAA 298
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 248 GGAGAAGGTTTTGCCTCCTGTTGAGCAGGAGAGTGATGTTGAGCTGGAGACTAAAGTTAA 307
Query 299 GAAATATCTTAGAGGAGAAGGTGCTAATCTTGAGACATTGAAAGATAAGAAACTAAAGAC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 GAAATATCTTAGAGGAGAAGGTGCTAATCTTGAGACATTGAAAGATAAGAAACTAAAGAC 367
Query 359 TCAACTTGCTTCACGAGAAAAGTTGTATGGGAAGTCTGCCAAAGCTGCTGCTAAAATCGA 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TCAACTTGCTTCACGAGAAAAGTTGTATGGGAAGTCTGCCAAAGCTGCTGCTAAAATCGA 427
Query 419 GAAGTGGCTCTTGCCTGCTGAGGCAGGCTACTTGGAGACTGAAGGTCTAGAGAAGACATG 478
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 428 GAAGTGGCTCTTGCCTGCTGAGGCAGGTTACTTGGAGACTGAAGGTCTAGAGAAGACATG 487
Query 479 GCGAGTCAAGCAGACAGATATTGCCAATGAAGTAGATATATTAAGCTCAAGAAACCAATA 538
|||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 488 GCGAGTAAAGCAGACAGATATTGCCAACGAAGTAGATATATTAAGTTCAAGAAACCAATA 547
Query 539 TGACATAGTGCTCCCAGATTTTGGCCCATACAAACTTGATTTTACGGCGAGTGGTCGGCA 598
||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 548 TGACATAGTGCTCCCAGATTTTGGCCCGTACAAACTTGATTTTACTGCAAGTGGTCGGCA 607
Query 599 TATGTTAGCTGGTGGTCGCAAAGGCCACCTTGCTCTTTTAGACATGATGAATATGAGCTT 658
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 608 TATGTTAGCTGGTGGTCGCAAAGGTCACCTTGCTCTTTTAGACATGATGAATATGAGCTT 667
Query 659 AATTAAAGAGATTCAGGTAAGAGAAACAGTACGTGATGTTGCATTCCTGCACAACGAACA 718
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 668 AATTAAAGAGATTCAGGTAAGAGAAACAGTACGCGATGTTGCATTCCTGCACAATGATCA 727
Query 719 ATTCTTTGCAGCTGCCCAGAAGAAGTATGCTTATATATATGGGAGAGATGGAACTGAGCT 778
||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 728 ATTCTTTGCAGCTGCACAGAAAAAGTATGCTTATATTTATGGGAGAGATGGAACTGAGCT 787
Query 779 GCATTGTTTGAAGGAACGTGGTCCAGTGGCCAGACTTCGGTTCCTAAAGAACCATTTCCT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 GCATTGTTTGAAGGAACGTGGTCCAGTGGCCAGACTTCGGTTCCTAAAGAACCATTTCCT 847
Query 839 ACTTGCATCAATAAACAAATCTGGGCAGCTACATTATCAAGATGTAACCCATGGAGGCAT 898
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 848 GCTTGCATCAGTAAACATGTCTGGGCAGCTACATTATCAAGATGTAACCCATGGAGGCAT 907
Query 899 GGTTGCTAGTATCCGAACAGGTAAAGGCCGAACAGATGTAATGGAAGTGAATCCTTACAA 958
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 GGTCGCTAGTATCCGAACAGGTAAAGGCCGAACAGATGTAATGGAAGTGAATCCTTACAA 967
Query 959 TGGTGTTGTTGCCTTGGGACATTCTGGTGGAACTGTCACAATGTGGAAACCCACTAGCCA 1018
| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 968 TAGTGTTGTTGGCTTGGGACATTCCGGTGGAACTGTCACAATGTGGAAACCCACTAGCCA 1027
Query 1019 AGCACCTCTTGTCCAGATGCAGTGTCACCCTGGGCCAGTGTCATCTGTCGCATTTCATCC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 AGCACCTCTTGTCCAGATGCAGTGTCACCCTGGGCCAGTGTCATCTGTCGCATTTCATCC 1087
Query 1079 AAATGGTCATCTCATGGCTACATCCGGTAAAGAGCGTAAAATCAAGATCTGGGATTTACG 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 AAATGGTCATCTCATGGCTACATCCGGTAAAGAGCGTAAAATCAAGATCTGGGATTTACG 1147
Query 1139 TAAATTCGAGGAAGTTCAGACGATCCACAGTTTTCATGCCAAAACGCTGAGTTTCAGTCA 1198
||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 1148 TAAATTCGAGGAAGTTCAGACTATTCACAGTTTTCATGCAAAAACGCTGAGTTTCAGTCA 1207
Query 1199 GAAAGGTTTGCTAGCAGCTGGAACTGGATCGTTTGTTCAGATTTTAGGAGATTCGAGTGG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 GAAAGGTTTGCTAGCAGCTGGAACTGGATCGTTTGTTCAGATTTTAGGAGATTCGAGTGG 1267
Query 1259 TGGTTCTTCACATAACTATAGTAGATACATGAACCACTCGATGGTGAAAGGTTATCAAAT 1318
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1268 TGGTTCTTCACATAACTACACTAGATACATGAACCACTCGATGGTGAAAGGTTATCAAAT 1327
Query 1319 CGAGAAGCTTATGTTCAGACCATATGAGGATGTTATTGGGATTGGTCACTCGATGGGCTG 1378
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1328 CGAGAAGGTTATGTTCAGACCATATGAGGATGTTATTGGAATTGGTCACTCGATGGGTTG 1387
Query 1379 GTCTAGCATTCTAATTCCAGGGTCTGGAGAACCCAATTTCGATTCTTGGGTGGCTAATCC 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1388 GTCTAGCATTCTAATTCCAGGGTCTGGAGAACCCAATTTCGATTCTTGGGTGGCTAATCC 1447
Query 1439 ATTTGAAACATCGAAACAGAGACGGGAGAAGGAAGTCCATTCGCTTCTTGATAAACTTCC 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1448 ATTTGAAACATCGAAACAGAGACGGGAGAAGGAAGTCCATTCGCTTCTTGATAAACTTCC 1507
Query 1499 ACCTGAGACAATAATGCTCGACCCTTCAAAGATTGGTGCGATGAGACCCTCTAGGAGGAA 1558
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1508 ACCTGAGACAATCATGCTGGACCCTTCAAAGATTGGTGCGATGAGACCCTCTAGGAGGAA 1567
Query 1559 AGAGAAGCCATCAAGAGGAGAGATAGAAGCTGAAAAAGAGGTGGCCATAGAAGCAGCAAA 1618
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1568 AGAGAAGCCATCAAGAGGAGAGATAGAAGCTGAGAAGGAGGTGGCCATAGAAGCAGCAAA 1627
Query 1619 GAGCACTGAGCTGAAGAACAAGACGAAAGGAAGGAATAAACCGAGCAAGCGGACCAAGAA 1678
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1628 GAGCACTGAGCTGAAGAACAAGACGAAAGGAAGGAATAAGCCGAGCAAGCGGACTAAGAA 1687
Query 1679 GAAGAAAGAGATGGTGGAGAACGCAAAGCGAACATTCCCGGAGCAAGAGCACAACACTGC 1738
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1688 GAAGAAAGAGATGGTGGAGAATGCAAAGCGAACATTCCCGGAGCAAGAGCACAATACCGC 1747
Query 1739 G-TTGAAGAAGAGAAGAATCGGAGAAGATGCTGCGGCGGAGCTACCGGCGAGTTTGAAGA 1797
| || |||||||||||||||| |||||||||||| || |||||||| ||||||| || |
Sbjct 1748 GATT-AAGAAGAGAAGAATCGTAGAAGATGCTGCTGCTGAGCTACCAACGAGTTTAAAAA 1806
Query 1798 GATTTGC-ACGGAAAAACTGAA 1818
| ||||| | ||||||||||||
Sbjct 1807 GGTTTGCCA-GGAAAAACTGAA 1827
> AT3G23850.1 | Symbols: | unknown protein; Has 7 Blast hits to
7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:8615564-8616533 FORWARD LENGTH=225
Length=225
Score = 111 bits (60), Expect = 2e-23
Identities = 77/85 (91%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 338 GAAA-GATAAGAAACTAAAGACTCAACTTGCTTCACGAGAAAAGTTGTATGGGAAGTCTG 396
|||| |||||||||||||||||||||||||||||| | | ||||||||||||||| | ||
Sbjct 92 GAAAGGATAAGAAACTAAAGACTCAACTTGCTTCAAGCGGAAAGTTGTATGGGAAATATG 151
Query 397 CCAAAGCTGCTGCTAAAATCGAGAA 421
| ||||||||| |||||||||||||
Sbjct 152 CAAAAGCTGCTTCTAAAATCGAGAA 176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91264590810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5