BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478393
Length=1193
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10572.1 | Symbols: | 3-phosphoinositide-dependent protein ... 1709 0.0
> AT3G10572.1 | Symbols: | 3-phosphoinositide-dependent protein
kinase-1, putative | chr3:3304268-3306504 FORWARD LENGTH=1278
Length=1278
Score = 1709 bits (925), Expect = 0.0
Identities = 1117/1206 (93%), Gaps = 28/1206 (2%)
Strand=Plus/Plus
Query 1 ACAATGGATGCAACTGATATTTGGGGAGAAATAGAACGTTCTGAGAGTTACCTAGTGTGC 60
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 76 ACAATGGAGGCAACTGATATTTGGGGAGAAATTGAACGTTCTGAGAGTTACCTAGTGTGC 135
Query 61 TCTATGTATGAAGAGGCAGAGTCATTATCCTCTTCTACACTGAAAATAATATTTGGCAAC 120
||||||||||||||||||||||||||||| || |||| |||||||| |||||||||||||
Sbjct 136 TCTATGTATGAAGAGGCAGAGTCATTATCTTCCTCTATACTGAAAAGAATATTTGGCAAC 195
Query 121 ATTGATGTTCTAT-C--CG-AG--------GGAGAACATCAGTTTCATGATATTTTAGAA 168
||||||||| ||| | || || || || ||||| ||||||||||| || |||
Sbjct 196 ATTGATGTTTTATCCGACGAAGCTTCTCAAGGTGATCATCAATTTCATGATATGTTGGAA 255
Query 169 TCTGCTGGCATGGTTTTAGTCCAATCCTTGCATGGAATCAGCAGGACAGTTGAGATTGTG 228
|||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 256 TCTGCTGGTATGGTCTTAGTTCAATCCTTGCATGGAATCGGCAGGACAGTTGAGATTGTA 315
Query 229 AATGAGTTAAGAGATGCGTTTGGAGAAGTTGCAGCTATTCCTGTTCAAGTTCTTCTCACT 288
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 316 AATGAGTTAAGAGATGTGTTTGGAGAAGTTGCAGCTATTCCTGTTCAAGTTCTTCTTACT 375
Query 289 GGAATATGCCTTCAAATATCAAATGGTTCCTACTCGGGTGTATGTGAGATTCTGGAAGAG 348
||| |||||||||||||||||||||||||||| | ||||||| |||| ||||||||||||
Sbjct 376 GGAGTATGCCTTCAAATATCAAATGGTTCCTATTTGGGTGTACGTGATATTCTGGAAGAG 435
Query 349 TTCTTTAGCATATGGGTTTACAAGGACAGCCACTATATCCTAAATGATGCTGGAGTAAGT 408
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 436 TTCTTTAGAATATGGGTTTACAAGGACAACCACTATATCCTAAATGATGCTGGAGTAAGT 495
Query 409 GCAAAAGGATTCCATGAGAAAAACTGTTTAGATATTGATGAGTACATGGAAGTAGTGGAG 468
||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 496 ACAAAAGGATTCCATGCGAAAAACTGTTTAGATATTGATGAGTACATGGAAGTCGTTGAG 555
Query 469 CTGTATACCTTTGGAGTTCTTGCAAAAGTTTCAAACGACATAGGCCTAGCCATTTCATGG 528
|||||||| |||||||||||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct 556 CTGTATACTTTTGGAGTTCTTGCAAAATTTTCAAATGACATGGGCCTAGCCATTTCATGG 615
Query 529 GTTGAGAAAGCTGCGTTACCTGAGGAAAGACGACAGGGGATTTTGAGAAGCTTGCATTCG 588
||||| |||||||| || ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 616 GTTGAAAAAGCTGCATTGCCTGAGGAAAGGCGACAGGGGATTTTGAGAAGATTGCATTCC 675
Query 589 TTACTTTCATTCAAAACAGCAAACGTTCCAGACGCTAGTTCTTTTGAGGAAAATTCTAAA 648
|||||||| || || ||| | | ||||||||||||||||||||||| |||
Sbjct 676 TTACTTTC--TC---TCA--AAA-----C--A-GCTAGTTCTTTTGAGGAAAATTCCAAA 720
Query 649 GATTCTTCTTATGCTGTAGTGAATAACAAGAAGTCGTTGGCCAATGAAAAGAAGGATAAG 708
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct 721 GATTCTTCTTATGCTGTAGTGAATAACAAGAAGTCGTTGGGTAATGAAAAGAATGATGAG 780
Query 709 ATTGATTCTGTCCTGAAACTCTCTAAACAACATGAACCTTGGTCACTTTGGTCATCCCAT 768
||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 781 ATTGATTCTTTCCTGAAACTATCTAAACAGCATGAACCTTGGTCACTTTGGTCATCCCAT 840
Query 769 CCTCTAAGCCTCAAGGTTGGTAATACCCAATTTAGCATGTCCAGGGGAAAGTTTGCCATA 828
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 841 CCTCTAAGCCTCAAGGTTGGTAATACCCAATTTAGCATGTCCAGGGGAAAGGTTGCCGTA 900
Query 829 AGCCTTGTTGGATTAATCATATGTTATGCCTTGAAGAGAAAACGAGCTGCTTTGATACGG 888
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 901 AGCCTTGTTGGATTAATCATATGTTATGCTTTGAAGAGAAAACGAGCTGCTTTGATAAGG 960
Query 889 ATCATTCGCAGGCAAATGGAGTCCACGAGAAAAGCAATAGTAGATTTCTGGAAGCTTGCG 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ATCATTCGCAGGCAAATGGAGTCCACGAGAAAAGCAATAGTAGATTTCTGGAAGCTTGCG 1020
Query 949 TTTTCATACCAAGTGAATCCTCTTGCAGCAATTCAATCCATACCAAGCACCACAACATGA 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTTTCATACCAAGTGAATCCTCTTGCAGCAATTCAATCCATACCAAGCACCACAACATGA 1080
Query 1009 AGATGGATCAAA-TTTGGTATTGAAAATGCCTATGTAATACCAAACCAACACTCAAATAT 1067
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AGATGGATCAAAATTTGGCATTGAAAATGCCTATGTAATACCAAACCAACACTCAAATAT 1140
Query 1068 TTTTATAATTGGTTCTATTCAAAGTTCAAACTTACTTTTCCCAAACTCCTCCACTTATAT 1127
||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1141 TTTCATAATTGGTTCTATTCAAAGTTCAAACTTAGTTTTCCCAAACTTCTCCACTTATAT 1200
Query 1128 CAAACTGTAATCACTGAACATGATTAAGAACCCATTGCATATTCTGTTTTATCTACCTTT 1187
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||
Sbjct 1201 CAAACTGTAATCACTGAACATGATTAAGAACCCGTTGCATATTATGTTTTATCTATATTT 1260
Query 1188 CTCCTT 1193
||||||
Sbjct 1261 CTCCTT 1266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58584036015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5