BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478395
Length=651
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10610.1 | Symbols: | Ribosomal S17 family protein | chr3:3... 835 0.0
> AT3G10610.1 | Symbols: | Ribosomal S17 family protein | chr3:3319027-3320149
FORWARD LENGTH=780
Length=780
Score = 835 bits (452), Expect = 0.0
Identities = 514/544 (94%), Gaps = 3/544 (1%)
Strand=Plus/Plus
Query 1 TTCTTTGCTTTCTTCTGTATTTTGCCGCCGCATCTCTGCTCTCCAGCTCCGGTCAATCCA 60
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 4 TTCTTTGCTTTCTTCTGTA-TTTGCCGCCGCTTCTCTGCTCTCCAGCTCCGGTCAATCCG 62
Query 61 TACAGGTAAGTCCAAAAGTTGTGAAAGATGGGTCGTGTTCGTACCAAAACAGTGAAGAAG 120
|||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 63 TACAGGTAAGTCAAAAAGTTGTGAAAGATGGGTCGTGTTCGTACCAAAACGGTTAAGAAG 122
Query 121 TCTTCACGTCAGGTGATTGAGAAGTACTACTCTCGGATGACTCTGGACTTCCACACCAAC 180
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 123 TCTTCACGTCAGGTGATTGAGAAGTACTACTCACGGATGACACTAGACTTCCACACCAAC 182
Query 181 AAGAAGATCTTACAAGAAGTTGCAATCATCCCATCTAAAAGGCTACGCAACAAGATTGCT 240
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 183 AAGAAGATCTTGGAAGAAGTTGCAATCATCCCATCGAAAAGGCTACGCAACAAGATTGCT 242
Query 241 GGATTCTCCACTCACTTGATGAAACGTATCCAAAAGGGTCCAGTCCGTGGAATCTCCCTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GGATTCTCCACTCACTTGATGAAACGTATCCAAAAGGGTCCAGTCCGTGGAATCTCCCTC 302
Query 301 AAGCTACAAGAGGAAGAGCGTGAAAGACGCATGGACTTTGTCCCCGATGAGTCAGCCATT 360
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 303 AAGCTACAAGAGGAAGAGCGTGAAAGGCGAATGGACTTTGTTCCCGATGAGTCAGCCATT 362
Query 361 AAAACCGATGATGTTAAGGTGGACAAAGAGACGCTAGAGATGCTTGCTTCTTTGGGAATG 420
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 363 AAAATCGATGATGTTAAGGTGGACAAAGAGACACTAGAGATGCTTGCTTCTTTGGGAATG 422
Query 421 TCTGCTACT-CGTGGGATTTCTCAAGTGGAGACACAACAAGCTATGGCACCTGCTGTGTT 479
|||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 TCTGATATTGC-TGGGATTTCTCAAGTGGAGACACAACAAGCTATGGCACCTGCTGTGTT 481
Query 480 TGGACGGCCGGCAAGAAGATACTAAGGCTGAGTTTATTGGGTTTGAATCAAAGACTTAGG 539
|||||| || ||| |||||||| || ||| |||||||||||||| ||||||||| || ||
Sbjct 482 TGGACGTCCCGCAGGAAGATACCAACGCTAAGTTTATTGGGTTTCAATCAAAGATTTCGG 541
Query 540 AGAC 543
||||
Sbjct 542 AGAC 545
Score = 76.8 bits (41), Expect = 2e-13
Identities = 53/58 (91%), Gaps = 3/58 (5%)
Strand=Plus/Plus
Query 558 GTTTCCTTTG-TTTCAAGATTAATGTCTGGAATTTACAGCTCTTGCTTTGTTTTTAAC 614
|||||||||| ||| ||||||||||||||||||||| |||| |||||||| |||||||
Sbjct 610 GTTTCCTTTGATTT-AAGATTAATGTCTGGAATTTATAGCTTTTGCTTTG-TTTTAAC 665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31446576022
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5