BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478396
Length=1510
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10630.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 2268 0.0
> AT3G10630.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr3:3321463-3323211 REVERSE LENGTH=1749
Length=1749
Score = 2268 bits (1228), Expect = 0.0
Identities = 1415/1505 (94%), Gaps = 14/1505 (1%)
Strand=Plus/Plus
Query 1 TCTTCATCGATGGATCAACCACCAGATCGGAGCAAGCGACCATGGAAATTCTCCACCTTC 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 18 TCTTCATCGATGGATCAACCACCAGATCGAAGCAAGCGACCATGGAAATTCTCCACCATC 77
Query 61 GTCTACTCTTCATCGATCCTT-TTCCTTCTTCTTTCGATATTCGTACTCGGCTTCACTAA 119
||||||||||||||||| ||| |||||||| |||||||||||| |||| |||||||| ||
Sbjct 78 GTCTACTCTTCATCGAT-CTTATTCCTTCTACTTTCGATATTCTTACTTGGCTTCACAAA 136
Query 120 TACCAATCTCTACAAAGTCCAAAGTCTGAGATTCACCTTCACTGCGAACCGCATCTACAG 179
|||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||
Sbjct 137 TACCGATCTCTACAAAGTCCAAAGTCTGAGATTCACCTTCACTGTGAACCGCTTCTATAG 196
Query 180 CTATCTTCAATTCCTTCTAGGCTTTCACGATGGAACTCCCAAATCCAAATCTGAAACCCT 239
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 197 CTATCTTCAATTCCTTCTAGGCTTTCATGATGGAACTCCCAAATCCAAATCCGAAACCCT 256
Query 240 AGACCCAGCTTCGTCTACGTCGCATTGCGTGTTATGGATGGCTCCTTTTCTCTCGAGTGG 299
| | |||||||| |||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 257 AAATCCAGCTTCTTCTACGCCGCACTGCGTGTTATGGATGGCTCCTTTTCTCTCGAGTGG 316
Query 300 CGGTTATAGCTCAGAAGCTTGGTCTTACATTTTATCACTTCATAACCATCTCACAAACCC 359
||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 317 TGGTTACAGCTCAGAAGCTTGGTCTTACGTTTTATCACTTCGTAACCATCTCACAAACCC 376
Query 360 TAGATTTCGAATCACCATCGAGCACCATGGTGATCTAGAATCAGTGGAGTTTTGGAATGG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 TAGATTTCGAATCACCATCGAGCACCATGGTGATCTAGAATCAGTGGAGTTTTGGAATGG 436
Query 420 TTTAGCTAAGGAGACTAAGGAGCTAGCGATTGAAATGTACAGA-ACACAATGTAGACCCA 478
||||||||||||||| |||||| |||||||||||||||| ||| | ||| ||||||||||
Sbjct 437 TTTAGCTAAGGAGACGAAGGAGGTAGCGATTGAAATGTATAGAGA-ACAGTGTAGACCCA 495
Query 479 ACGAGACGATCGTTGTTTGTCATAGTGAACCTGGTGCTTGGTATCCACCATTGTTTGAGA 538
| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 496 ATGAGACGATAGTTGTTTGTCATAGTGAGCCTGGTGCTTGGTATCCACCATTGTTTGAGA 555
Query 539 CTCTTCCTTGTCCTCCAACTGGTTACGAAGATTTCTTATCTGTGATTGGTAGAACAATGT 598
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 556 CTCTACCTTGTCCTCCAACTGGCTACGAAGATTTCTTATCTGTGATTGGTAGAACAATGT 615
Query 599 TTGAGACTGATAGAGTCAATCCTGAGCATGTGAAGCGATGTAATCAGATGGATCATGTTT 658
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 616 TTGAGACTGATAGAGTCAATCCAGAGCATGTGAAGCGATGTAATCAAATGGATCATGTTT 675
Query 659 GGGTTCCTACTGAGTTTCATGTCTCTTCTTTTGTACAAAGTGGGGTTGATTCATCTAAGG 718
||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 676 GGGTTCCTACTGATTTTCACGTCTCTTCGTTTGTACAAAGTGGGGTTGATTCATCTAAGG 735
Query 719 TTGTCAAGATTGTGCAGCCTGTAGATGTCGGTTTCTTCGATCCTTCCAAGTATAAGCCTT 778
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 736 TTGTCAAGATTGTGCAGCCTGTAGATGTCGGTTTCTTCGATCCTTCAAAGTATAAGCCTT 795
Query 779 TGGATCTGATGGCGGTTGGGGATTTGGTTTTGGGTTCTAGAATGAAGAATGCGGGTTTAG 838
||||||||||||||||||||||||||||||| |||||| | |||||||| | |
Sbjct 796 TGGATCTGATGGCGGTTGGGGATTTGGTTTTAGGTTCTGGGATGAAGAA--------T-G 846
Query 839 GGTTTGTGTTCTTGAGTGTGTTTAAGTGGGAGCAGAGGAAAGGTTGGGATGTGTTGTTGA 898
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 847 GGTTTGTGTTCTTGAGTGTGTTTAAATGGGAGCAGAGGAAAGGTTGGGATGTATTGTTGA 906
Query 899 AGGCTTACCTCAGAGAGTTCTCTGGTAAAGACAATGTTGCTCTGTTTTTGTTGACAAACG 958
| |||||| | || ||||| |||||| |||||||||||||||||||||||||||| ||||
Sbjct 907 AAGCTTACTTGAGTGAGTTTTCTGGTGAAGACAATGTTGCTCTGTTTTTGTTGACGAACG 966
Query 959 CTTATCACTCGGACAGCGATTTCGGGAACAAGATTCTTGATTTCGTAGAAGAATTGAATA 1018
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 967 CGTATCACTCGGACAGCGATTTCGGGAACAAGATTCTTGATTTCGTAGAAGAAATGAATA 1026
Query 1019 TACAAGAGCTTCGAAATGGTTACCCTTGTGTGTATGTGATTGATAAACACATAGCTCAAG 1078
|| |||||| ||| ||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1027 TAGAAGAGCCTCGGAATGGTTACCCTTTTGTGTATGTGATTGATAAACACATTGCTCAAG 1086
Query 1079 TTGATTTACCTCGGTTGTACAAAGCGGCTGATGCGTTTGTGTTGCCTACAAGAGGAGAAG 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 TTGATTTACCTCGGTTGTACAAAGCGGCTGATGCGTTTGTGTTGCCTACAAGAGGAGAAG 1146
Query 1139 GATGGGGACGACCGATAGTGGAAGCCATGGCAATGTCTTTGCCTGTGATCGCAACAAACT 1198
||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1147 GATGGGGACGACCTATAGTGGAAGCCATGGCTATGTCTTTGCCTGTGATCACAACAAACT 1206
Query 1199 GGTCAGGACCAACGGAGTATCTGACAGAGCGTAATGGTTACCCGTTGGTGGTAGAGGAGA 1258
||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1207 GGTCAGGACCAACAGAGTATCTTACAGAGCGGAATGGTTACCCGTTGGTGGTAGAGGAGA 1266
Query 1259 TGAGTGAAGTGAAGGAAGGTCCTTTTGAAGGGCATCAATGGGCTGAGCCATCTGTAGATA 1318
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1267 TGAGTGAAGTGAAGGAAGGTCCTTTTGAAGGGCATCAATGGGCAGAGCCATCTGTGGATA 1326
Query 1319 AGCTTAGGGTTCTAATGAGGCATGTGATGAGTAATCCTGATGAGGCGAAGGTTAAAGGAA 1378
|||| |||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||
Sbjct 1327 AGCTGAGGGTTCTAATGAGGCGTGTAATGAGTAACCCTGATGAGGCTAAGGTTAAAGGAA 1386
Query 1379 ACCGTGGAAGAGACGACATGGTCCAGAAGTTTGCTCCTGAGGTTGTTGCTAAAGTTGTAG 1438
| ||||||||||| ||||||||| |||| ||||||||||||||||||||||| |||||||
Sbjct 1387 AACGTGGAAGAGATGACATGGTCAAGAATTTTGCTCCTGAGGTTGTTGCTAAGGTTGTAG 1446
Query 1439 CGGATCAAATAGAGAGAATCTTTGATGAGAAAATAAGAACATGACAGGAATGTCACACTT 1498
|||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1447 CGGATCAAATAGCGAGAATCTTTGATGAGAAAATAAGAACATGACAGGA-TCTCACACTT 1505
Query 1499 TGCTT 1503
| |||
Sbjct 1506 TACTT 1510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74497608780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5