BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478398
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10640.1 | Symbols: VPS60.1 | SNF7 family protein | chr3:332... 1555 0.0
AT5G04850.2 | Symbols: VPS60.2 | SNF7 family protein | chr5:140... 604 4e-172
> AT3G10640.1 | Symbols: VPS60.1 | SNF7 family protein | chr3:3323310-3325039
REVERSE LENGTH=1033
Length=1033
Score = 1555 bits (842), Expect = 0.0
Identities = 956/1010 (95%), Gaps = 12/1010 (1%)
Strand=Plus/Plus
Query 1 CCTTGTTCTCCAAATTCTCGATTTCTCTTTCTTCTTCCAAAGTCTTTTGTCTCTCTGTCT 60
|||| ||||||||| ||||||||||||||| |||||||||| |||||||||||||||| |
Sbjct 32 CCTTCTTCTCCAAAGTCTCGATTTCTCTTTATTCTTCCAAATTCTTTTGTCTCTCTGTAT 91
Query 61 CATCCAAAATTCCCAGATTTCTTCACGGAGTTAGAAGAAGAAGAAGATGAGGAGAGTTTT 120
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 92 CATCCAAAATTCCCAGATTTATTCACGGAGTT---AGAAGAAGAAGATGAGGAGAGTTTT 148
Query 121 CGGCGCGAAGAAGAACACAGAGCCTCCTCCGTCCATTCAGGATGCCTCTGATCGGATAAA 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CGGCGCGAAAAAGAACACAGAGCCTCCTCCGTCCATTCAGGATGCCTCTGATCGGATAAA 208
Query 181 TAAAAGAGGAGATTCGGTAGAAGATAAGATAAAGAAGCTTGATGTTGAGCTCTTCAAATA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 209 TAAAAGAGGAGATTCGGTAGAAGATAAGATAAAGAAGCTTGATGTTGAGCTCTGCAAATA 268
Query 241 TAAAGAACAGCTTAAAAAGACAAGACCTGGTCCTGCTCAAGAAGCTGTCAAAGCTCGTGC 300
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 269 CAAAGAACAGCTCAAAAAGACCAGACCTGGTCCTGCTCAAGAAGCTGTCAAAGCTCGTGC 328
Query 301 TATGAGAGTTCTCAAGCAGAAGAAAATGTATGAAGGACAACGCGACATGCTCTATAATCA 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 TATGCGAGTTCTCAAGCAGAAGAAAATGTATGAAGGACAACGCGACATGCTCTATAATCA 388
Query 361 AACATTCAATCTCGATCAAGTTTCATTTGCCGCTGAAGGACTCAAAGATGCTCAACAAAC 420
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 389 GACATTCAATCTCGATCAAGTTTCATTCGCCGCTGAAGGACTCAAAGATGCTCAACAAAC 448
Query 421 TATGACAGCACTAAAATCTGCGAACAAGGATTTGAAAGGAATGATGAAAACCGTCAAGAT 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 449 TATGACAGCACTAAAATCTGCGAACAAGGAGTTGAAAGGAATGATGAAAACCGTCAAGAT 508
Query 481 TCAAGATATTGATAATTTGCAAGACGAGATGATGGATCTGATGGATGTTAGTTCTGAAAT 540
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 509 TCAAGATATTGATAATTTACAAGACGAGATGATGGATCTGATGGATGTTAGTTCTGAAAT 568
Query 541 TCAAGAAACACTTGGTAGAAGCTACAATATTCCTGATGGCCTTGATGAAGATGACCTCAT 600
||||||| |||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 569 TCAAGAATCACTTGGTAGGAGCTACAATATTCCTGATGGCCTTGACGAGGATGACCTCAT 628
Query 601 GGGAGAGCTTGATGCTCTTGAAGCTGACATGGGAAACGAGACCGAAGCAGATGGAATGCC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 GGGAGAGCTTGATGCTCTTGAAGCTGACATGGGAAACGAGACCGAAGCAGATGGAATGCC 688
Query 661 TTCTTATCTCCAACCGGATACAGAAACTGATTACGATAACGAGCTTAACTTGCCTGCAGC 720
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 689 TTCTTATCTCCAACCTGATACAGAAACTGATTACGATAGCGAGCTTAACTTGCCTGCAGC 748
Query 721 ACCAACAGGACACAATGGAGCGCCACAGGGAAGAGTTCAGGCTGAGGACGAATTTGGATT 780
||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||
Sbjct 749 ACCAACAGGACACAATGGAGCTCCACATGGAAGAGCTCAGGCTGAGGACGAATTTGGATT 808
Query 781 ACCAGCAGTGCCACGAGCTTCTCTCCGGGGATAAGTTCCACCGATTCTCTTGTTGGGTGG 840
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 809 ACCAGCAGTGCCACGAGCTTCTCTCCGGGGTTAAGTTCCGGCGATTCTCTTGTTGATTGG 868
Query 841 AGCTACTAAGCTTTT--ATTTAGCCTTAGTGTCTTTATTCATTTGTGCATAACGTTTTTA 898
||||||||||||||| ||||||||||||| || |||||||||||||||||||||||| |
Sbjct 869 AGCTACTAAGCTTTTTTATTTAGCCTTAGTATCGTTATTCATTTGTGCATAACGTTTTAA 928
Query 899 ACTTTGATAAACTTCCTTTTGGCTTTCTTATTGACTTCAAAAATTGTCTTATTTCATGTA 958
|||||||||||| ||||||||||||||| ||||| || | ||||||||||||||||
Sbjct 929 ACTTTGATAAACCTCCTTTTGGCTTTCTCATTGAATTTATAAATTGTCTTATTTCA---- 984
Query 959 TCTCAGATTTCATATTTTCTATCATCAATAACACAAATGATGAGAATTTT 1008
| |||| |||||||||| |||||||| ||||||||||| |||||||||
Sbjct 985 -C--AGATATCATATTTTCAATCATCAAAAACACAAATGAGGAGAATTTT 1031
> AT5G04850.2 | Symbols: VPS60.2 | SNF7 family protein | chr5:1408019-1409893
REVERSE LENGTH=1133
Length=1133
Score = 604 bits (327), Expect = 4e-172
Identities = 451/511 (88%), Gaps = 7/511 (1%)
Strand=Plus/Plus
Query 97 GAAGAAG-AAGATGAGGAGAGT-TTTCGGCGCGAAGAAGAACACAGAGCCTCCTCCGTCC 154
|||| || || |||| |||| | ||| || |||||||| |||| |||||||||||||||
Sbjct 77 GAAGGAGAAACATGAAGAGAATCTTT-GGAGCGAAGAATAACAAAGAGCCTCCTCCGTCT 135
Query 155 ATTCAGGATGCCTCTGATCGGATAAATAAAAGAGGAGATTCGGTAGAAGA-TAAGATAAA 213
||||| ||||||||||||||||| ||||||||||||||||| || ||||| ||| | ||
Sbjct 136 ATTCAAGATGCCTCTGATCGGATCAATAAAAGAGGAGATTCAGTGGAAGAGAAAG-TTAA 194
Query 214 GAAGCTTGATGTTGAGCTCTTCAAATATAAAGAACAGCTTAAAAAGACAAGACCTGGTCC 273
|| |||||||| |||||||| |||||| ||||| ||| | |||| ||| |||||||||||
Sbjct 195 GAGGCTTGATGCTGAGCTCTGCAAATACAAAGATCAGATCAAAAGGACTAGACCTGGTCC 254
Query 274 TGCTCAAGAAGCTGTCAAAGCTCGTGCTATGAGAGTTCTCAAGCAGAAGAAAATGTATGA 333
||||| ||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 255 TGCTCTAGAAGCTATCAAAGCTCGTGCTATGAGAGTTCTCAAGCAAAAGAAGATGTATGA 314
Query 334 AGGACAACGCGACATGCTCTATAATCAAACATTCAATCTCGATCAAGTTTCATTTGCCGC 393
||||||||| ||||||||||||||||| || || || || ||||||||||||||||| ||
Sbjct 315 AGGACAACGTGACATGCTCTATAATCAGACTTTTAACCTTGATCAAGTTTCATTTGCTGC 374
Query 394 TGAAGGACTCAAAGATGCTCAACAAACTATGACAGCACTAAAATCTGCGAACAAGGATTT 453
|||||| || |||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 375 TGAAGGCCTTAAAGATGCTCAACAAACTATGACAGCGCTAAAATCTGCTAACAAGGAGCT 434
Query 454 GAAAGGAATGATGAAAACCGTCAAGATTCAAGATATTGATAATTTGCAAGACGAGATGAT 513
|||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 435 GAAAGGAATGATGAAAACCGTCAAGATTCAAGATATAGATAATTTGCAAGATGATATGAT 494
Query 514 GGATCTGA-TGGATGTTAGTTCTGAAATTCAAGAAACACTTGGTAGAAGCTACAATATTC 572
||| || | |||||| ||||||||||||||||| ||||||||||| ||||||||| |||
Sbjct 495 GGA-CTTAATGGATGAGAGTTCTGAAATTCAAGAGACACTTGGTAGGAGCTACAATGTTC 553
Query 573 CTGATGGCCTTGATGAAGATGACCTCATGGG 603
|||||| | |||| |||||||||||| ||||
Sbjct 554 CTGATGACATTGACGAAGATGACCTCCTGGG 584
Score = 174 bits (94), Expect = 1e-42
Identities = 176/215 (82%), Gaps = 8/215 (4%)
Strand=Plus/Plus
Query 604 AGAGCTTGATGCTCTTGAAGCTGACATGGGAAACGAGACCGAAGCAGATGGAATGCCTTC 663
|||||||||||||||||||||||||||||| |||||||| |||||||| ||| |||||||
Sbjct 696 AGAGCTTGATGCTCTTGAAGCTGACATGGGGAACGAGACTGAAGCAGACGGAGTGCCTTC 755
Query 664 TTATCTCCAACCGGATACAGAAACTG-AT-T-ACGATAACGAGCTTAACTTGCCTGCAGC 720
|||||||||||| |||| || ||| | || | | || | ||||| ||||||||| ||||
Sbjct 756 TTATCTCCAACCCGATA-AGGAACCGGATCTTA--ATGATGAGCTCAACTTGCCTTCAGC 812
Query 721 ACCAACAGGACACA-ATGGAGCGCCACAGGGAAGAGTTCAGGCTGAGGACGAATTTGGAT 779
||||| || || | | ||||| |||| ||| ||| ||||||||| || |||| ||||
Sbjct 813 ACCAATGGGGCATACA-GGAGCTCCACCCGGACGAGCTCAGGCTGAAGATGAATGGGGAT 871
Query 780 TACCAGCAGTGCCACGAGCTTCTCTCCGGGGATAA 814
||||||| || ||||| || || || ||||| |||
Sbjct 872 TACCAGCGGTACCACGTGCATCACTTCGGGGCTAA 906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49380166501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5