BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478401
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10670.1 | Symbols: ATNAP7, NAP7 | non-intrinsic ABC protein... 2087 0.0
AT5G04880.1 | Symbols: | pseudogene of ABC transporter family ... 115 1e-24
> AT3G10670.1 | Symbols: ATNAP7, NAP7 | non-intrinsic ABC protein
7 | chr3:3335049-3337387 REVERSE LENGTH=1376
Length=1376
Score = 2087 bits (1130), Expect = 0.0
Identities = 1306/1388 (94%), Gaps = 23/1388 (2%)
Strand=Plus/Plus
Query 1 AAGATTCCCTGGACCTAACCAACCACATCACTTCACCGGAT-AAACCTCCACCG---TCT 56
|||| |||||||||||||| ||||||||||||||||||||| |||||||||||| |||
Sbjct 3 AAGAATCCCTGGACCTAACTAACCACATCACTTCACCGGATAAAACCTCCACCGTCTTCT 62
Query 57 TCCGCCGCAATTTCTGTCTCCATGGCCGGCGTTAACCTACAGCTCCGTCACGCATACTCT 116
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 TCCGCCGCAATTTCTGTCTCCATGGCCGGCGTTAACCTACAGCTCCGTCACGCATACTCC 122
Query 117 ATAGCTCAATTCGTTCCTACTGTTTCTTCTCCTCCTCCTCTTCATACTCAGCGAGTTCGG 176
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 123 ATAGCTCAATTCGTTCCAACTGTTTCTTCTCCTCCTCCTCTTCCTACTCAGCGAGTTCGC 182
Query 177 CTCGGGACTTCACCCTCTCGTGTTCTCTTATGCAATCTCCGAGCTAATTCCGCCGCCGCT 236
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 183 CTCGGGACTTCACCCTCTCGTGTTCTATTATGCAATCTCCGAGCTAATTCCGCCGCCGCT 242
Query 237 CCAATCCTACCAACTACTCGCCGTTCAGTTACTGTTTCGGCGTCTTCCGTATCCTCATCA 296
|||||||| | |||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 243 CCAATCCTGCGAACTACTCGCCGTTCAGTTATTGTTTCGGCGTCTTCCGTATCCTCAGCC 302
Query 297 GTCGATTCGGATTCGTTGGTGGAAGAACGCGATGACGTGGCGAGGATCCCGTTGCTTGAA 356
|||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||
Sbjct 303 GTCGATTCGGATTCGTTGGTGGAAGATCGTGATGACGTGGGGAGGATCCCGTTGCTTGAA 362
Query 357 GTTAGGGATTTGAGAGCTGTGATTGCTGAATCGAGACAGGAGATACTAAAAGGCGTCAAT 416
||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 363 GTTAGGGATTTGAGAGCAGTGATTGCTGAATCGAGACAAGAGATACTGAAAGGCGTCAAT 422
Query 417 TTAGTTATCTACGAAGGAGAGGTTCACGCAGTGATGGGGAAGAACGGTTCAGGGAAGAGC 476
|| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 423 TTGGTTGTCTACGAAGGAGAGGTTCACGCAGTGATGGGGAAGAACGGTTCAGGAAAGAGC 482
Query 477 ACATTTTCCAAGGTTCTTGTTGGTCATCCGGATTATGAAGTGACGGGAGGAAGTATAGTG 536
|| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 483 ACGTTTTCGAAGGTTCTTGTTGGTCATCCCGATTATGAAGTGACGGGAGGGAGTATTGTG 542
Query 537 TTTAAAGGGCAGAATCTACTTGATATGGAACCAGAAGATAGATCTCTTGCCGGTCTTTTT 596
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 543 TTTAAAGGGCAGAATCTACTTGATATGGAACCAGAGGATAGATCTCTTGCCGGTCTCTTT 602
Query 597 ATGAGTTTCCAATCCCCAGTTGAGATCCCTGGTGTTAGCAATATGGATTTCTTGAATATG 656
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 ATGAGTTTCCAGTCCCCAGTTGAGATCCCTGGTGTTAGCAATATGGATTTCTTGAATATG 662
Query 657 GCATTTAATGCTCGAAAAAGAAAGCTTGGTCAGCCAGAGCTTGATCCAATCCAGTTCTAC 716
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GCATTCAATGCTCGGAAAAGAAAGCTTGGTCAGCCAGAGCTTGATCCAATCCAGTTCTAC 722
Query 717 AGCCACTTAGTATCAAAACTTGAAGTTGTGAATATGAAGACCGATTTTCTCAACAGAAAT 776
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 723 AGCCACTTGGTATCAAAACTCGAAGTTGTGAATATGAAGACCGATTTTCTCAACAGAAAT 782
Query 777 GTCAATGAAGGATTTAGTGGTGGTGAAAGGAAACGCAATGAGATTCTACAGTTAGCGGTC 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 GTCAATGAAGGATTTAGTGGTGGTGAAAGGAAACGCAATGAGATTCTACAGTTAGCGGTC 842
Query 837 CTTGGAGCCGAGTTGGCTATACTGGACGAAATTGATTCAGGGTTGGATGTTGATGCTCTT 896
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 843 CTTGGAGCTGAGTTGGCTATACTGGACGAGATTGATTCAGGGTTGGATGTTGATGCTCTT 902
Query 897 CAAGATGTGGCAAAGGCGGTGAATGGGCTTTTGACACCAAAAAACTCTGTTCTGATGATA 956
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 903 CAAGATGTGGCAAAGGCGGTGAACGGGCTTTTGACACCAAAAAACTCTGTTCTGATGATA 962
Query 957 ACCCACTATCAACGCCTACTTGACTACATCAAACCAACTCTCATACACATCATGGAGAAT 1016
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 963 ACGCACTACCAACGCCTACTTGACTACATCAAACCAACTCTCATACATATCATGGAGAAT 1022
Query 1017 GGAAGAATCATTAAAACTGGAGACAACTCCTTGGCCAAACTACTGGAAAAGGAAGGCTAC 1076
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 GGGAGAATCATTAAAACCGGAGACAACTCCTTGGCCAAACTACTGGAAAAGGAAGGCTAC 1082
Query 1077 AAAGCGATATCCGGTTAGTTATCGCCGATCATACATATAACCTGTCTTCCTTCTCTGAGA 1136
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1083 AAAGCGATATCCGGTTAGTTATCGCGGATCATACATATAACCTGTCTTCCTTCTTTGAGA 1142
Query 1137 GACCATGGTTAT-ATATGGGTCAAAGACAATGGAAGCTAAAGCTGATGATTGGAAAATCA 1195
|||||||||||| ||||||| |||| |||||||||||||||||||||||||||||| | |
Sbjct 1143 GACCATGGTTATTATATGGGACAAATACAATGGAAGCTAAAGCTGATGATTGGAAACTGA 1202
Query 1196 AATTTGCCACTACAATCTTTGACCCGTAGGtttt--tttGGCATCATTGGTTTGCATGAC 1253
||| | |||||||||||||||||||||| |||| |||| || ||| | |||||||
Sbjct 1203 AATCTATCACTACAATCTTTGACCCGTAG-TTTTGGTTTG-CA--ATT--T--GCATGAC 1254
Query 1254 AAACTACTTTATTGGGTTGTGAACAGTTCTTCCATACCTTTTTGTAACTAACAACTATAA 1313
|||||||||||||||| |||||||||| ||||| ||||||||||||||||||| | |||
Sbjct 1255 AAACTACTTTATTGGGATGTGAACAGTA-TTCCACACCTTTTTGTAACTAACAAGTTTAA 1313
Query 1314 AATTCAGTTAATAAATTATGTTATTA-ACGATGCTCTAATTATGTTAAGTTTGAGACTTG 1372
||||||||||||||||| |||||||| | ||||||| || | |||||||||||||
Sbjct 1314 AATTCAGTTAATAAATTTTGTTATTATAA-ATGCTCTTAT-A----AAGTTTGAGACTTT 1367
Query 1373 AAGTGGAT 1380
||||||||
Sbjct 1368 AAGTGGAT 1375
> AT5G04880.1 | Symbols: | pseudogene of ABC transporter family
protein | chr5:1420727-1422582 REVERSE LENGTH=1856
Length=1856
Score = 115 bits (62), Expect = 1e-24
Identities = 112/135 (83%), Gaps = 7/135 (5%)
Strand=Plus/Plus
Query 577 GATCTCTTGCCGG-TCT-TTTTATGAGTTTCCAATCCCCAGTTGAGATCCCTGGTGTTAG 634
||||||||| ||| ||| || | ||||| ||||| | |||||||||||||||||||||||
Sbjct 680 GATCTCTTG-CGGTTCTCTTCT-TGAGTCTCCAAACTCCAGTTGAGATCCCTGGTGTTAG 737
Query 635 CAATATGGATTT-CTTGA-A-TATGGCATTTAATGCTCGAAAAAGAAAGCTTGGTCAGCC 691
|||||||||||| || || | ||| | |||| ||||| | || ||||| | |||||||||
Sbjct 738 CAATATGGATTTTCTCGAGAATATAGTATTTGATGCTAGGAACAGAAAACCTGGTCAGCC 797
Query 692 AGAGCTTGATCCAAT 706
| || |||| |||||
Sbjct 798 AAAGATTGAGCCAAT 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67971537930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5