BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478404
Length=1468
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10700.1 | Symbols: GalAK | galacturonic acid kinase | chr3:... 2230 0.0
> AT3G10700.1 | Symbols: GalAK | galacturonic acid kinase | chr3:3346578-3351023
REVERSE LENGTH=1646
Length=1646
Score = 2230 bits (1207), Expect = 0.0
Identities = 1373/1450 (95%), Gaps = 24/1450 (2%)
Strand=Plus/Plus
Query 4 TAGACGTGTTACCAAACACCACCTTATTTGGTCATCTTCCTCATTCCACGGTTACTCCCA 63
||||||||||||||| || ||||||||||||||||||||||||||| | |||||||| ||
Sbjct 6 TAGACGTGTTACCAAGCAGCACCTTATTTGGTCATCTTCCTCATTCGAAGGTTACTCGCA 65
Query 64 CAT-CTC-G--CACTTCCT-CTGTACA-CT-TCTTC-GT-CTCCATCCAA-CC-C-CAGA 111
| | ||| | |||||| | || | || || | || || |||| | ||| || | |||
Sbjct 66 CTTCCTCTGCACACTTCTTCCTCTCCATCTAACCTCAGTACTCC-TACAATCCTCTAAGA 124
Query 112 ACTCC-----T--AC-GCTGAGAAAAGCTTCGCGACAATGTCTTGGCCTACGGATTCTGA 163
| ||| | || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 125 A-TCCATAGATCAACTGCTGGGAAAAGCTTCGCGACAATGTCTTGGCCTACGGATTCTGA 183
Query 164 GTTAATTTCCATAAAGGAAGCAGTGGCTCAGATGAGTGGAAGAGATAAAGGAGAAGTTCG 223
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 184 GTTAAATTCCATAAAGGAGGCAGTGGCTCAGATGAGTGGAAGAGATAAAGGAGAAGTTCG 243
Query 224 AGTGGTGGTTGCACCTTATCGTATATGTCCTTTAGGAGCTCACATTGATCACCAGGGTGG 283
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 AGTGGTGGTCGCTCCTTATCGTATATGTCCTTTAGGAGCTCACATTGATCACCAGGGTGG 303
Query 284 AACTGTATCAGCTATGACGATTAATAAAGGGATCCTTCTTGGTTTTGTTCCATCCGGCAA 343
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 304 AACTGTATCAGCTATGACGATTAATAAAGGGATCCTTCTTGGTTTTGTTCCATCGGGTGA 363
Query 344 TACTCAGGTCCAGTTGCGTTCTGCACAATTTGAAGGAGAAGTATGTTTCAGAGTAGATGA 403
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TACTCAGGTCCAGTTGCGCTCTGCACAATTTGAAGGAGAAGTATGTTTCAGAGTAGATGA 423
Query 404 AATCCAGCACCCCATAGGCCTAGCAAACAAGAATGGTGCAAGCACCCCATCTCCATCGAA 463
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 424 AATCCAGCACCCAATAGGCCTAGCAAACAAGAATGGTGCAAGCACGCCATCTCCATCGAA 483
Query 464 AGAAAAAAGCATCTGGGGCACTTATGCCAGAGGAGCAGTTTATGCGTTACAGACCAGCAA 523
|||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 484 GGAAAAAAGTATCTGGGGTACTTATGCCAGAGGAGCAGTTTATGCGTTACAGAGCAGCAA 543
Query 524 AAAGAATCTCAAACAGGGCATTGTTGGTTACCTCAGTGGCTCAAATGGACTAGATAGTTC 583
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 544 AAAGAATCTCAAACAGGGCATTATTGGTTACCTCAGTGGCTCAAATGGACTAGATAGCTC 603
Query 584 TGGGCTTAGCTCATCAGCTGCTGTTGGTGTGGCATACCTGCTCGCTTTAGAGAATGCAAA 643
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 604 CGGGCTTAGCTCATCAGCTGCTGTTGGTGTGGCATACCTGCTAGCTCTAGAGAATGCAAA 663
Query 644 CGAATTGACTGTATCCCCAACAGAAAATATCGAATATGACAGACTTATTGAGAACGGATA 703
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 664 CGAATTGACTGTATCCCCAACAGAAAATATCGAATATGACAGGCTTATTGAGAATGGGTA 723
Query 704 TCTGGGTCTGCGGAATGGAATTTTGGATCAATCAGCCATTTTGCTTTCGAGTTATGGGTG 763
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 724 TCTGGGTCTGCGGAATGGAATTTTGGATCAATCAGCTATTTTGCTTTCGAATTATGGGTG 783
Query 764 TCTAACATACATGGACTGCAAGACTATGGACCACGAGCTTGTACAGGCTCCTGAACTGGA 823
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 784 TCTAACATACATGGACTGCAAGACTTTGGACCACGAGCTTGTACAGGCTCCTGAACTGGA 843
Query 824 GAAACCGTTCAGGATATTGTTAGCATTCTCAGGTTTGAGGCAGGCATTGACCACCAACCC 883
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 844 GAAACCGTTCAGGATATTGTTAGCATTCTCAGGCTTGAGGCAGGCGTTGACCACCAACCC 903
Query 884 AGGATATAATCTGCGAGTTTCTGAGTGTCAAGAGGCTGCAAAAGTTCTTTTGACTGCATC 943
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 904 AGGATATAATCTGCGAGTTTCTGAGTGTCAAGAGGCAGCAAAAGTTCTTTTGACTGCATC 963
Query 944 TGGGAACAGCGAGCTGGAACCTACCTTGTGCAATGTTGAGCATGCGGTCTATGAAGCTCA 1003
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 964 TGGGAACAGTGAGCTGGAACCTACGTTGTGCAATGTTGAGCATGCGGTCTATGAAGCTCA 1023
Query 1004 CAAGCATGAGCTGAAACCGGTTTTAGCTAAAAGAGCAGAGCATTATTTCTCGGAAAACAT 1063
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1024 CAAGCATGAGCTGAAACCGGTTTTAGCTAAAAGAGCAGAGCATTATTTCTCGGAGAACAT 1083
Query 1064 GCGGGTTATCAAAGGACGGGAAGCCTGGGCTTCAGGCAATCTTGAAGAATTTGGAAAGCT 1123
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1084 GCGAGTTATCAAAGGACGGGAAGCCTGGGCTTCAGGGAATCTTGAAGAATTTGGAAAGCT 1143
Query 1124 AATTTCAGCATCCGGCTTGAGTTCCATTGAGAATTACGAATGCGGTGCGGAGCCACTAAT 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1144 AATTTCAGCATCCGGCTTGAGTTCCATTGAGAATTACGAATGCGGTGCGGAGCCACTGAT 1203
Query 1184 CCAGCTATACAAGATTCTTCTGAAGGCTCCTGGTGTATATGGAGCTCGATTCAGCGGTGC 1243
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1204 CCAGCTATACAAGATTCTTCTGAAGGCTCCTGGTGTATATGGAGCTAGATTCAGCGGTGC 1263
Query 1244 AGGCTTT-AGGGGATGTTGTCTAGCCTTTGTAGATGCAGAAAAAGCTGAGGCAGCTGCTT 1302
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 AGG-TTTCAGGGGATGTTGTCTAGCCTTTGTAGATGCAGAAAAAGCTGAGGCAGCTGCTT 1322
Query 1303 CATATGTGAAGGATGAATATGAAAAGGCCCAACCCGAGTTTGCTAAGAATCTGAATGGAG 1362
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1323 CATATGTGAAGGATGAATATGAAAAGGCCCAACCCGAGTTTGCTAACAATCTAAATGGAG 1382
Query 1363 GAAAACCTGTTCTCATCTGTGAAGCAGGTGATGCTGCTCGTGTTCTTCTCTGATCAATCC 1422
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1383 GAAAACCTGTTCTCATCTGTGAAGCAGGTGACGCTGCTCGTGTTCTTCTCTGATCAATCC 1442
Query 1423 CGGAGttttt 1432
|||||||||
Sbjct 1443 TGGAGTTTTT 1452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72389185890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5