BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478404 Length=1468 Score E Sequences producing significant alignments: (Bits) Value AT3G10700.1 | Symbols: GalAK | galacturonic acid kinase | chr3:... 2230 0.0 > AT3G10700.1 | Symbols: GalAK | galacturonic acid kinase | chr3:3346578-3351023 REVERSE LENGTH=1646 Length=1646 Score = 2230 bits (1207), Expect = 0.0 Identities = 1373/1450 (95%), Gaps = 24/1450 (2%) Strand=Plus/Plus Query 4 TAGACGTGTTACCAAACACCACCTTATTTGGTCATCTTCCTCATTCCACGGTTACTCCCA 63 ||||||||||||||| || ||||||||||||||||||||||||||| | |||||||| || Sbjct 6 TAGACGTGTTACCAAGCAGCACCTTATTTGGTCATCTTCCTCATTCGAAGGTTACTCGCA 65 Query 64 CAT-CTC-G--CACTTCCT-CTGTACA-CT-TCTTC-GT-CTCCATCCAA-CC-C-CAGA 111 | | ||| | |||||| | || | || || | || || |||| | ||| || | ||| Sbjct 66 CTTCCTCTGCACACTTCTTCCTCTCCATCTAACCTCAGTACTCC-TACAATCCTCTAAGA 124 Query 112 ACTCC-----T--AC-GCTGAGAAAAGCTTCGCGACAATGTCTTGGCCTACGGATTCTGA 163 | ||| | || |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 125 A-TCCATAGATCAACTGCTGGGAAAAGCTTCGCGACAATGTCTTGGCCTACGGATTCTGA 183 Query 164 GTTAATTTCCATAAAGGAAGCAGTGGCTCAGATGAGTGGAAGAGATAAAGGAGAAGTTCG 223 ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 184 GTTAAATTCCATAAAGGAGGCAGTGGCTCAGATGAGTGGAAGAGATAAAGGAGAAGTTCG 243 Query 224 AGTGGTGGTTGCACCTTATCGTATATGTCCTTTAGGAGCTCACATTGATCACCAGGGTGG 283 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 244 AGTGGTGGTCGCTCCTTATCGTATATGTCCTTTAGGAGCTCACATTGATCACCAGGGTGG 303 Query 284 AACTGTATCAGCTATGACGATTAATAAAGGGATCCTTCTTGGTTTTGTTCCATCCGGCAA 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 304 AACTGTATCAGCTATGACGATTAATAAAGGGATCCTTCTTGGTTTTGTTCCATCGGGTGA 363 Query 344 TACTCAGGTCCAGTTGCGTTCTGCACAATTTGAAGGAGAAGTATGTTTCAGAGTAGATGA 403 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 364 TACTCAGGTCCAGTTGCGCTCTGCACAATTTGAAGGAGAAGTATGTTTCAGAGTAGATGA 423 Query 404 AATCCAGCACCCCATAGGCCTAGCAAACAAGAATGGTGCAAGCACCCCATCTCCATCGAA 463 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 424 AATCCAGCACCCAATAGGCCTAGCAAACAAGAATGGTGCAAGCACGCCATCTCCATCGAA 483 Query 464 AGAAAAAAGCATCTGGGGCACTTATGCCAGAGGAGCAGTTTATGCGTTACAGACCAGCAA 523 |||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 484 GGAAAAAAGTATCTGGGGTACTTATGCCAGAGGAGCAGTTTATGCGTTACAGAGCAGCAA 543 Query 524 AAAGAATCTCAAACAGGGCATTGTTGGTTACCTCAGTGGCTCAAATGGACTAGATAGTTC 583 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || Sbjct 544 AAAGAATCTCAAACAGGGCATTATTGGTTACCTCAGTGGCTCAAATGGACTAGATAGCTC 603 Query 584 TGGGCTTAGCTCATCAGCTGCTGTTGGTGTGGCATACCTGCTCGCTTTAGAGAATGCAAA 643 ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 604 CGGGCTTAGCTCATCAGCTGCTGTTGGTGTGGCATACCTGCTAGCTCTAGAGAATGCAAA 663 Query 644 CGAATTGACTGTATCCCCAACAGAAAATATCGAATATGACAGACTTATTGAGAACGGATA 703 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || Sbjct 664 CGAATTGACTGTATCCCCAACAGAAAATATCGAATATGACAGGCTTATTGAGAATGGGTA 723 Query 704 TCTGGGTCTGCGGAATGGAATTTTGGATCAATCAGCCATTTTGCTTTCGAGTTATGGGTG 763 |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 724 TCTGGGTCTGCGGAATGGAATTTTGGATCAATCAGCTATTTTGCTTTCGAATTATGGGTG 783 Query 764 TCTAACATACATGGACTGCAAGACTATGGACCACGAGCTTGTACAGGCTCCTGAACTGGA 823 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 784 TCTAACATACATGGACTGCAAGACTTTGGACCACGAGCTTGTACAGGCTCCTGAACTGGA 843 Query 824 GAAACCGTTCAGGATATTGTTAGCATTCTCAGGTTTGAGGCAGGCATTGACCACCAACCC 883 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 844 GAAACCGTTCAGGATATTGTTAGCATTCTCAGGCTTGAGGCAGGCGTTGACCACCAACCC 903 Query 884 AGGATATAATCTGCGAGTTTCTGAGTGTCAAGAGGCTGCAAAAGTTCTTTTGACTGCATC 943 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 904 AGGATATAATCTGCGAGTTTCTGAGTGTCAAGAGGCAGCAAAAGTTCTTTTGACTGCATC 963 Query 944 TGGGAACAGCGAGCTGGAACCTACCTTGTGCAATGTTGAGCATGCGGTCTATGAAGCTCA 1003 ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 964 TGGGAACAGTGAGCTGGAACCTACGTTGTGCAATGTTGAGCATGCGGTCTATGAAGCTCA 1023 Query 1004 CAAGCATGAGCTGAAACCGGTTTTAGCTAAAAGAGCAGAGCATTATTTCTCGGAAAACAT 1063 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1024 CAAGCATGAGCTGAAACCGGTTTTAGCTAAAAGAGCAGAGCATTATTTCTCGGAGAACAT 1083 Query 1064 GCGGGTTATCAAAGGACGGGAAGCCTGGGCTTCAGGCAATCTTGAAGAATTTGGAAAGCT 1123 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1084 GCGAGTTATCAAAGGACGGGAAGCCTGGGCTTCAGGGAATCTTGAAGAATTTGGAAAGCT 1143 Query 1124 AATTTCAGCATCCGGCTTGAGTTCCATTGAGAATTACGAATGCGGTGCGGAGCCACTAAT 1183 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1144 AATTTCAGCATCCGGCTTGAGTTCCATTGAGAATTACGAATGCGGTGCGGAGCCACTGAT 1203 Query 1184 CCAGCTATACAAGATTCTTCTGAAGGCTCCTGGTGTATATGGAGCTCGATTCAGCGGTGC 1243 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1204 CCAGCTATACAAGATTCTTCTGAAGGCTCCTGGTGTATATGGAGCTAGATTCAGCGGTGC 1263 Query 1244 AGGCTTT-AGGGGATGTTGTCTAGCCTTTGTAGATGCAGAAAAAGCTGAGGCAGCTGCTT 1302 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1264 AGG-TTTCAGGGGATGTTGTCTAGCCTTTGTAGATGCAGAAAAAGCTGAGGCAGCTGCTT 1322 Query 1303 CATATGTGAAGGATGAATATGAAAAGGCCCAACCCGAGTTTGCTAAGAATCTGAATGGAG 1362 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 1323 CATATGTGAAGGATGAATATGAAAAGGCCCAACCCGAGTTTGCTAACAATCTAAATGGAG 1382 Query 1363 GAAAACCTGTTCTCATCTGTGAAGCAGGTGATGCTGCTCGTGTTCTTCTCTGATCAATCC 1422 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1383 GAAAACCTGTTCTCATCTGTGAAGCAGGTGACGCTGCTCGTGTTCTTCTCTGATCAATCC 1442 Query 1423 CGGAGttttt 1432 ||||||||| Sbjct 1443 TGGAGTTTTT 1452 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72389185890 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5