BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478407
Length=1878
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10720.2 | Symbols: | Plant invertase/pectin methylesterase... 2793 0.0
AT5G04970.1 | Symbols: | Plant invertase/pectin methylesterase... 1184 0.0
> AT3G10720.2 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr3:3354482-3357614 REVERSE LENGTH=2050
Length=2050
Score = 2793 bits (1512), Expect = 0.0
Identities = 1762/1880 (94%), Gaps = 28/1880 (1%)
Strand=Plus/Plus
Query 1 ATGCAAAGACTAAActtctcttcttcactcttattcctgtcttttttcttcttctCATGG 60
||||||| |||||||||| ||||||| ||||| ||| |||||||| ||||| |||||||
Sbjct 40 ATGCAAACACTAAACTTCACTTCTTCTCTCTTGTTCTTGTCTTTTATCTTCCTCTCATGT 99
Query 61 GCTTTGCTAATCTCATCACAACAATCTCCGTCACAGCCACCTTCTGACCCTCCGTCACCG 120
||| |||| |||||||||||||||||||| |||||| | | | ||
Sbjct 100 GCTCTGCTTATCTCATCACAACAATCTCCATCACAG----C--C--A--------CA--- 140
Query 121 TTACCTTTTGAGCCTCCGTCGCAGCTACCTTTTGAGCCTCCGGTAGAGTCACCATTCTTG 180
|| | |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 141 TT--C---TGAGCCTCCGTCACAGCTACCTTTTGAGCCTCCGGTAGAGTCACCATTCTTC 195
Query 181 CCTCCGTCACAGCCACCAATATTCGTGCCACCGTCACACCCACCTTCTTTGCCTCCGTCA 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 196 CCTCCGTCACAGCCACCAATATTCGTGCCACCGTCACAGCCACCTTCTTTGCCTCCGTCA 255
Query 241 CAGTCTCAGTCACCTTCTCTCGCTTGTAAGTCAACTCCATACCCTAAGCTCTGCCGTACG 300
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 256 CAGTCTCAGTCACCTTCTCTCGCTTGCAAGTCAACTCCATACCCTAAGCTTTGCCGTACG 315
Query 301 ATCCTTAACGCTGTTAAATCCTCACCGTCCGATCCTTACCGTTACGGCAAATTCACGATA 360
||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 316 ATCCTCAACGCTGTCAAATCCTCACCGTCAGATCCTTACCGTTACGGCAAATTCACTATA 375
Query 361 AAGCAATGCCTCAAACAAGCAAGCCGTCTCTCCAAAGTCATCACCAGTTACGCGCTCCGC 420
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 376 AAGCAATGCCTCAAGCAAGCAAGCCGTCTATCCAAAGTCATCACCAGTTACGCGCGGCGC 435
Query 421 GTGAAAAGCAAACCAGGCTCCGCCACGGCCGAGGAAATCGGCGCTCTAGCGGACTGCGGC 480
||| |||||||||||||||| ||||||||||||||||| || || | ||||||||||||
Sbjct 436 GTGGAAAGCAAACCAGGCTCGGCCACGGCCGAGGAAATAGGGGCGGTGGCGGACTGCGGC 495
Query 481 GAGTTATCGGAGCTGAGTGTGAACTACCTTGAAATGGTCACGACGGAGCTCAAAACGGCG 540
|||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 496 GAGTTATCGGAGCTGAGTGTGAACTACCTTGAAACCGTCACGACGGAGCTTAAGACGGCG 555
Query 541 CAGGTGATGACGGCAGCTCTAGTCGAGCATGTGAACAGTCTTCTCAGTGGCGTGGTGACG 600
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 556 CAGGTGATGACGGCAGCTCTCGTCGAGCATGTGAACAGTCTTCTCAGTGGTGTAGTGACG 615
Query 601 AATCAGCAGACGTGTCTTGACGGACTCGCGGAGGCGAAGAGTGGATTCGCCGCCGCGATT 660
|||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||
Sbjct 616 AATCAGCAGACGTGTCTTGACGGACTCGTGGAGGCTAAGAGTGGTTTCGCCGCCGCGATT 675
Query 661 GGGTCGCCGATGGGGAATCTCACGCGACTTTACAGTATCTCGTTGGGGCTTGTGAGCCAC 720
|| |||||||||||||||||||| || ||||||||||||||||| || ||||||||||||
Sbjct 676 GGTTCGCCGATGGGGAATCTCACTCGCCTTTACAGTATCTCGTTAGGACTTGTGAGCCAC 735
Query 721 GCGCTTAATCGTAACCTAAAGAGGTATAAAG-CTGCTAAAGGGAAGATTCTTGGTGGTGC 779
|| ||||| |||||||| ||||||| ||||| || | ||||||||||||||||||||||
Sbjct 736 GCACTTAACCGTAACCTGAAGAGGTTTAAAGCCT-CCAAAGGGAAGATTCTTGGTGGTGG 794
Query 780 GAACTCAACATATCGCGAACCGCTCGAGACTTTAATTAAGGGTTTACGTAAAACATGCGA 839
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 795 GAACTCAACCTATCGCGAACCGCTCGAGACTTTGATTAAGGGTTTACGTAAAACATGCGA 854
Query 840 CAACGACAAAGATTGTCGGAAAGCTAGCCGGAACTTAGGGGAGCTAGGTGAGACGAGCGG 899
||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 855 CAACGACAAAGATTGCCGGAAAACTAGCCGGAACTTAGGGGAGCTAGGTGAGACCAGCGG 914
Query 900 TGGTTCCATCCTCGTGAGTAAAGCAGTGATCGTCGGCCCGTACAAATCCGACAACTTCAC 959
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 915 CGGTTCCATCCTCGTGAGTAAAGCAGTGATCGTCGGTCCGTTCAAATCCGACAACTTCAC 974
Query 960 AACCATCACCGATGCTATTGCAGCCGCACCTAATAACACTAGACCAGAGGATGGTTACTT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 AACCATCACCGATGCTATTGCAGCCGCACCTAATAACACTAGACCAGAGGATGGTTACTT 1034
Query 1020 TGTCATCTACGCAAGAGAAGGTGTCTATGAAGAATATATTGTTGTTCCCATCAACAAAAA 1079
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 TGTTATCTACGCAAGAGAAGGTGTCTATGAAGAATATATTGTTGTTCCCATCAACAAAAA 1094
Query 1080 GAACTTAATGCTTATTGGAGATGGGATCAATAAGACGATTATTACTGGGAACCATAACGT 1139
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1095 GAACTTAATGCTTATGGGAGATGGGATCAATAAGACGATTATTACAGGGAACCATAATGT 1154
Query 1140 TGTTGATGGTTGGACAACGTATAATTGCTCGAGCTTTGCTGTGGTTGGAGAGCGGTTCAT 1199
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1155 TGTTGATGGTTGGACTACGTATAATTGCTCGAGCTTCGCTGTGGTTGGAGAGCGGTTCAT 1214
Query 1200 GGCGGTTGATGTTACATTCAGAAACACAGCCGGACCTGAAAAACATCAGGCTGTGGCTTT 1259
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1215 GGCGGTTGATGTTACATTCAGAAACACAGCCGGACCTGAAAAACATCAGGCAGTGGCTTT 1274
Query 1260 GAGGAACAATGCAGAAGGATCGAGTTTTTATCGGTGTAGTTTTGAAGGCTATCAAGATAC 1319
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1275 GAGGAACAATGCGGAAGGATCAAGTTTTTATCGGTGTAGTTTTGAAGGCTATCAAGATAC 1334
Query 1320 TCTCTACGTCCATTCTCTCAGACAATTCTATCGTGAATGCGATATATATGGTACCGTCGA 1379
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1335 TCTCTACGTCCATTCTCTTAGACAATTCTATCGCGAATGCGATATATATGGTACCGTCGA 1394
Query 1380 TTTTATATTCGGAAATGCAGCCGCAATTTTCCAAAATTGCAACATATATGCTCGAAAACC 1439
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1395 TTTTATATTCGGAAATGCAGCCGCAATTTTTCAAAACTGCAACATATATGCTCGAAAACC 1454
Query 1440 AATGGCCAAGCAAAAGAACGCGATAACTGCTCATGGAAGACTCGATCCAAACCAGAATAC 1499
|||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 1455 GATGGCCAAGCAAAAGAACGCAATAACAGCGCATGGAAGACTCGATCCAAACCAGAATAC 1514
Query 1500 CGGAATCTCTATCATCAATTGTACAATAAAAGCCGCCCCAGATCTTGCAGCCGAGCCTAA 1559
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1515 CGGAATCTCTATCATCAATTGTACAATAAAAGCCGCCCCAGATCTTGCAGCTGAGCCTAA 1574
Query 1560 ATCAGCCATGACATTCTTAGGGAGACCATGGAAGCCCTACTCAAGGACGGTTTTCATGCA 1619
||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1575 ATCTGCCATGACATTCTTAGGGAGACCGTGGAAGCCATACTCAAGGACGGTTTTCATGCA 1634
Query 1620 ATCATATATTAGTGACATTGTCCAACCAGTTGGATGGCTGGAATGGAACGGTACAACTGG 1679
|||||| |||||||||||||| |||||||| |||||||| |||||||||||||||| |||
Sbjct 1635 ATCATACATTAGTGACATTGTTCAACCAGTCGGATGGCTCGAATGGAACGGTACAATTGG 1694
Query 1680 ACTAGACACAATCTACTACGGTGAGTACGA-TAACTTTGGACCAGGGGCTAACACGAACC 1738
||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||
Sbjct 1695 ACTAGACACAATCTACTACGGTGAGTA-TAGTAACTTTGGACCAGGTGCTAACACGAACC 1753
Query 1739 AGAGAGTGCAGTGGTTAGGGTATAATTTATTGAACTTGGCAGAAGCCATGAACTTCACGG 1798
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1754 AGAGAGTGCAGTGGTTAGGGTACAATTTATTGAACTTGGCAGAAGCCATGAACTTCACGG 1813
Query 1799 TCTACAACTTCACCATGGGAGATACATGGTTGCCTCAAACCGATATTCCTTTCTATGGTG 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1814 TCTACAACTTCACCATGGGAGATACATGGTTGCCTCAAACCGATATTCCTTTCTATGGTG 1873
Query 1859 GTTTGCTTCGCAAAGAATGA 1878
|||||||| |||||||||||
Sbjct 1874 GTTTGCTTAGCAAAGAATGA 1893
> AT5G04970.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr5:1464145-1467041 REVERSE LENGTH=2032
Length=2032
Score = 1184 bits (641), Expect = 0.0
Identities = 1321/1647 (80%), Gaps = 56/1647 (3%)
Strand=Plus/Plus
Query 260 TCGCTTGTAAGTCAACTCCATACCCTAAGCTCTGCCGTACGATCCT-TAACGCTGTTAAA 318
|||||||||| || ||||| ||||| ||||||||||| |||||||| | ||| ||||||
Sbjct 297 TCGCTTGTAAATCCACTCCTTACCCAAAGCTCTGCCGCACGATCCTCT-CCGCCGTTAAA 355
Query 319 TCCTCACCGTCCGATCCTTACCGTTACGGCAAA-TTCACGATAAAGCAATGCCTCAAACA 377
|| ||||| ||||||||||||| |||||| ||| ||||| || |||||||||||||||||
Sbjct 356 TCATCACCTTCCGATCCTTACCATTACGG-AAAGTTCACAATGAAGCAATGCCTCAAACA 414
Query 378 AGCAAGCCGTCTCTCCAAAGTCATC-ACCAG-TTACGCGCTCCGCGTGAAAAGC-AAACC 434
||| | || ||||||||||||||| ||| | || || | |||||| |||| | ||
Sbjct 415 AGCTCGTCGCCTCTCCAAAGTCATCAACC-GCTT-TGCCCAGCGCGTG-GAAGCTGATCC 471
Query 435 AGGCTCCG-CCACGGCCGAGGAAATCGGCGCTCTAGCGGACTGCGGCGAGTTATCGGAGC 493
||| | || | |||| || || || | || | || || ||||| ||| || | ||||
Sbjct 472 AGG-TACGTCGACGGTGGAAGAGGTCAGTGCGGTGGCTGATTGCGGTGAGCTAGCAGAGC 530
Query 494 TGAGTGT-GAACTACCTTGAAATGGTCAC-GACGGAGCTCAAAACGGCGCAGGTGATGAC 551
| || || ||| |||||||||| ||| || || |||||| ||| ||||| || |||||||
Sbjct 531 TTAGCGTCGAA-TACCTTGAAACGGTTACGGA-GGAGCTGAAAGCGGCGGAGCTGATGAC 588
Query 552 GGCAGCTCTAGTCGAGCATGTGAAC-AGTCTTCTCAGTGGCGTGGTGACGAATCAGCAGA 610
||| || || || || | ||| || ||||||||| ||||||| ||||| ||||||||||
Sbjct 589 GGCTGCGCTCGTTGATCGTGT-CACGAGTCTTCTCGGTGGCGTTGTGACTAATCAGCAGA 647
Query 611 CGTGTCTTGACGGACTCGCGGAGGCGAAGAGTGGATTCGCCG-CCGCGATTGGGTCGCCG 669
|||| || ||||| || | ||| || ||||| ||||| | || | |||||||| |||||
Sbjct 648 CGTGCCTCGACGGTCTTGTGGACGCTAAGAGCGGATTTG-CGACGGCGATTGGAACGCCG 706
Query 670 ATGGGGAATCTCACGCGACTTTACAGTATCTCGTTGGGGCTTGTGAGCCACGCGCTTAAT 729
| |||||||| ||||| || |||||| | ||||||||||||||||| |||||||||||
Sbjct 707 TTAGGGAATCTAACGCGCCTCTACAGTGTGTCGTTGGGGCTTGTGAGTCACGCGCTTAAC 766
Query 730 CGTAACCTAAAGAGGTATAAAGCTGCTAAAGGGAAGATTC-TTGGTGGTGCG-AACTCAA 787
||||| | ||||||||||||| | | || ||||| | || ||||||||| | ||| ||
Sbjct 767 CGTAATTTGAAGAGGTATAAAGGTTCCAAGGGGAA-AATCTTTGGTGGTG-GTAAC-AAA 823
Query 788 --CATATCGCGAACCGCTCGAGACTTTAATTAAGGGTTTACGTAAAACATGCGACAACGA 845
| | ||| ||||| ||||||||||| ||||||| |||||| |||||||||||||| |
Sbjct 824 CCCGT-TCGTGAACCTCTCGAGACTTTGATTAAGGTTTTACGCAAAACATGCGACAAGGG 882
Query 846 CAAAGATTGTCGGAAAGCTAGCCGGAACTTAGGGGAGCTAGGTGAGACGAGCGGTGGTTC 905
|||||||||||||||||||| | | || ||||| |||||||| |||||||||||||| ||
Sbjct 883 CAAAGATTGTCGGAAAGCTAACAGAAATTTAGGTGAGCTAGGAGAGACGAGCGGTGGATC 942
Query 906 CATCCTCGTGAGTAAAGCAGTGATCGTCGGCCCGTA-CAAATCCGACAACTTCACAACCA 964
|||||||| || ||||||||| |||||| || || ||| |||| |||||| | ||||
Sbjct 943 GATCCTCGTAAGGGAAGCAGTGACCGTCGGTCCATATGAAA-CCGATAACTTCCCCACCA 1001
Query 965 TCACCGATGCTATTGCAGCCGCACCTAATAACACTA-GACCAGAGGATGGTTACTTTGTC 1023
| || || || |||| |||||||||||| |||| | || ||| | || ||||| ||
Sbjct 1002 TAACTGAGGCCGTTGCTGCCGCACCTAATCACAC-ATTCCCGGAGCAAGGCTACTTCGTA 1060
Query 1024 ATCTACGCAAGAGAAGGTGTCTATGAAGAATATATTGT--TGTTCCCATCAACAAAAAG- 1080
||||| ||||| | |||| | || ||||||||| |||| | ||| || || ||||||
Sbjct 1061 ATCTATGCAAGGGCAGGTCTTTACGAAGAATATGTTGTCAT-TTCAAAT-AA-AAAAAGA 1117
Query 1081 AACTTAATGCTTATTGGAGATGGGATCAATAAGACGATTATTACTGGGAACCATAACGTT 1140
||| ||||||||||||| || || |||||||| || || ||| |||| ||||| | ||
Sbjct 1118 AACATAATGCTTATTGGGGACGGAATCAATAAAACTATCATTTCTGGAAACCACAGTTTT 1177
Query 1141 GTTGATGGTTGGACAACGTATAATTGC-TCGAGCTTTGCTGTGGTTGGAGAGCGGTTCAT 1199
|||||||||||||||||||||||| | |||| |||||| ||||| ||||| || || |
Sbjct 1178 ATTGATGGTTGGACAACGTATAATT-CTTCGACCTTTGCGGTGGTGGGAGACCGATTTGT 1236
Query 1200 GGCGGTTGATGTTACATTCAGAAACACAGCCGGACCTGAAAAACATCAGGCTGTGGCTTT 1259
||||||||||| |||||| |||||||||| ||||| || || || ||||||||||| |
Sbjct 1237 TGCGGTTGATGTGACATTCCGAAACACAGCTGGACCAGAGAAGCACCAGGCTGTGGCCGT 1296
Query 1260 GAGGAACAATGCAGAAGGATCGAGTTTTTATCGGTGTAGTTTTGAAGGCTATCAAGATAC 1319
|| |||||||| || ||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1297 AAGAAACAATGCGGATGGATCGACATTTTATCGATGTAGTTTTGAAGGCTATCAAGATAC 1356
Query 1320 TCTCTACGTCCATTCTCTCAGACAATTCTATCGTGAATGCGATATATATGGTACCGTCGA 1379
||| ||||| |||||| | ||||| |||||||||||||| ||||||||||| ||| | ||
Sbjct 1357 TCTTTACGTTCATTCTTTGAGACAGTTCTATCGTGAATGTGATATATATGGGACCATAGA 1416
Query 1380 TTTTATATTCGGAAATGCAGCCGCAAT-TTTCCAAAATTGCAACATATATGCTCGAAAAC 1438
||||||||||||||||||||| || || |||| |||| |||||||||||||| |||||||
Sbjct 1417 TTTTATATTCGGAAATGCAGCTGCCATATTTC-AAAACTGCAACATATATGCCCGAAAAC 1475
Query 1439 CAATGGCCAAGCAAAAGAACGC-GATAACTGCTCATGGAAGA-CTCGATCCAAACCAGAA 1496
| ||||| || || ||||| || | | || || ||||||||| || || |||||||||||
Sbjct 1476 CGATGGCAAATCAGAAGAATGCAG-TGACAGCCCATGGAAGAACT-GACCCAAACCAGAA 1533
Query 1497 TACCGGAATCTCTATCATCAATTGTACAATAAAAGCCGCCCCAGATCTTGCAGCCGAGCC 1556
|| |||||||| ||||| |||||||| || ||| ||||| || || || || || ||
Sbjct 1534 AACTGGAATCTCCATCATTAATTGTACTATTGGAGCTGCCCCGGACCTCGCTGCTGACCC 1593
Query 1557 TAAATC-AGCCATGACATTC-TTAGGGAGACCATGGAAGCCCTACTCAAGGACGGTTTTC 1614
|| || | ||||||||||| || ||| | ||||||||||| ||||| |||||||| | |
Sbjct 1594 CAAGTCGA-CCATGACATTCCTT-GGGCGGCCATGGAAGCCTTACTCGAGGACGGTCTAC 1651
Query 1615 ATGCAATCATATATTAGTGACATTGTCCAACCAGTTGGATGGCTGGAATGGAACGGTACA 1674
|| |||||||| || || || |||||||||| || || |||||||||||||| ||||||
Sbjct 1652 ATACAATCATACATCAGCGATGTTGTCCAACCGGTAGGGTGGCTGGAATGGAATGGTACA 1711
Query 1675 ACTGGACTAGACACAATCTACTACGGTGAGTACGATAACTTTGGACCAGGGGCT-A-ACA 1732
|| || |||||||| |||| ||| ||||| || || || |||||||| |||||| | |||
Sbjct 1712 ACCGGGCTAGACACGATCTCCTATGGTGAATATGACAATTTTGGACCGGGGGCTGATACA 1771
Query 1733 CG-AACCAGAGAGTGCAGTGGTTAGGGTATAATTTATTGAACTTGGCAGAAGCCATGAAC 1791
| || || | || || |||| ||| |||| |||||||||||| | |||||||||||
Sbjct 1772 AGTAAA-AG-G-GTCCAATGGTCAGGATATAGCCTATTGAACTTGGTACAAGCCATGAAC 1828
Query 1792 TTCACGGTCTACAACTTCACCATGGGAGATACATGGTTGCCTCAAACCGATATTCCTTTC 1851
||||| || || || ||||| ||||||| || ||||||||||| || || ||||| |||
Sbjct 1829 TTCACCGTATATAATTTCACTTTGGGAGACACTTGGTTGCCTCAGACTGACATTCCCTTC 1888
Query 1852 TATGGTGGTTTGCTTCGCAAAGAATGA 1878
|| || |||||||||| || ||||||
Sbjct 1889 TACGGCGGTTTGCTTCACACCGAATGA 1915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92971409340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5