BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478408
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10730.1 | Symbols: SUN2, ATSUN2 | SAD1/UNC-84 domain protei... 2209 0.0
AT5G04990.1 | Symbols: SUN1, ATSUN1 | SAD1/UNC-84 domain protei... 702 0.0
> AT3G10730.1 | Symbols: SUN2, ATSUN2 | SAD1/UNC-84 domain protein
2 | chr3:3358328-3360682 REVERSE LENGTH=1756
Length=1756
Score = 2209 bits (1196), Expect = 0.0
Identities = 1434/1544 (93%), Gaps = 35/1544 (2%)
Strand=Plus/Plus
Query 1 AAGATCATGTCGGCATCAACGGTGTCAATCACCGCTAGTCCTACGAGGGCAATTAGGCGG 60
|||||||||||||| ||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 155 AAGATCATGTCGGCGTCAACGGTGTCAATCACCGCTAGTCCT---AGGACAATAAGGCGG 211
Query 61 ACGCCGGTTCTCTCCGGTGAGAATAAATCCAATTTTGATTTCCCGCCGAGCGAATCTCAT 120
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 212 ACGCCGGTTCTCTCCGGTGAGAAGAAATCTAATTTTGATTTCCCGCCGAGCGAATCTCAT 271
Query 121 GCCAATGCGGCAATTGGAGAGTCTTCCGCTGGTACGAACAAGGATCTGATTCGCTCCGAG 180
||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct 272 GCCAATGCGGCAATTGGAGAGTCGTCTGCTGGTACGAACAAGGATCTGATTCGCGCCGAG 331
Query 181 GCTGCCGCTGAGAGATCTAACACCTACGACGTCGGTCCTGTGACTAGGAAATCGGGATCC 240
||||||| ||||||||| |||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct 332 GCTGCCGGTGAGAGATCCAACACCTACGACGTAGGTCCGGTGACAAGGAAATCAGGATCC 391
Query 241 ACCGCGACGGGGACTAATACAACCACCACGCAGCGTCGAACGCGGAAGTCTCAGGGGAAT 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 392 ACCGCGACGGGGACTAATACAACCACCACGCAGCGTCGGACGCGGAAGTCTCAGGGGAAT 451
Query 301 AAGACAGATAAG-GGGCAGTGGAAGACAGTGGTTAGGGTATTCGCGAAGCAATTTGGGGC 359
|||| |||| || ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 452 AAGATAGAT-AGAGGGAAATGGAAGACAGTGGTTAGGGTATTCGCGAAGCAATTTGGGGC 510
Query 360 TCTTTTGTTACTTGTTGGGTTGATTCAATTGATTAGGAAATTGACTTTGAAGGATTCGTC 419
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 511 TCTTTTGTTACTTGTTGGATTGATTCAGTTGATTAGGAAATTGACTTTGAAGGATTCGTC 570
Query 420 TCTATCTTCTTCGAATTTCCCAATTGAAACGGAAATGGTGCTTTCGGAATTGGAGAGTCG 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 TCTGTCTTCTTCGAATTTCCCAATTGAAACGGAAATGGTGCTTTCGGAATTGGAGAGTCG 630
Query 480 GATTTCGGCTGTTGATGGTTTGGTAAAGACTACTACGAAGATGATGCAGGTTCAAGTTGA 539
|||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 631 GATTTCTGCAGTTGATGGTTTGGTGAAGACTACGACGAAGATGATGCAGGTTCAAGTTGA 690
Query 540 ATTTCTTGATAAGAAGATGGAAAGCGAATCAAGAGCATTGAGGCAGACGATAGATTCCAC 599
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 691 GTTTCTTGATAAGAAGATGGATAGTGAATCAAGAGCATTGAGGCAGACGATAGATTCCAC 750
Query 600 ATCTTCTGCGTTGCAGAGTGGGTTGAAGAAGGTAGAGTCTAAGACGGAGAGATTGCAGGT 659
|||||||| ||| || |||| |||||||||||||||||||||||| ||||| || |||||
Sbjct 751 ATCTTCTGTGTTACATAGTGAGTTGAAGAAGGTAGAGTCTAAGACAGAGAGGTTACAGGT 810
Query 660 TTCCGTAGATGAGTTAAATGCTAAACCTTTGGTGTCTAGAGAGGAATTAGAGAGAGTTTA 719
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 811 TTCTGTAGATGAGTTAAATGCTAAACCTTTGGTGTCTAGAGAGGAGTTAGAGAGAGTTTA 870
Query 720 CGAGGAGTTGAAGAAGGGTAAGGCCGGTGATTCTGCTGTTAACATTGATGAATTGAGGGC 779
||||||||||||||||||||||| ||||||||||| ||||||||||||| || |||||||
Sbjct 871 CGAGGAGTTGAAGAAGGGTAAGGTCGGTGATTCTGATGTTAACATTGATAAACTGAGGGC 930
Query 780 TTATGCTCGTGACGTAGTGGAGAAAGAGAT-TGGAAAGCATGCTGCTGATGGCCTTGGGC 838
||||||||||||| |||||||||||||||| ||||| |||| ||| ||||||||||| |
Sbjct 931 TTATGCTCGTGACATAGTGGAGAAAGAGATAGGGAAA-CATGTTGCAGATGGCCTTGGTC 989
Query 839 GAGTAGACTATGCGTTAGCGTCTGGTGGGGCTTTTGTAATGGGGCATTCGGATCCGTTTC 898
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 990 GAGTAGATTATGCGTTAGCGTCTGGTGGAGCTTTTGTAATGGGGCATTCGGATCCGTTTC 1049
Query 899 TTGTTGGAAATGGGGGTATTTGGTTTGGGACAAGCAGGCGGCGGGTTCATAGCAAAGCGG 958
|||||||||||||| ||| ||||||||||||||||||| | |||||||||||||||||||
Sbjct 1050 TTGTTGGAAATGGGCGTAATTGGTTTGGGACAAGCAGGAGACGGGTTCATAGCAAAGCGG 1109
Query 959 TTAAGATGTTAACTCCGAGTTTCGGGGAGCCTGGACAGTGTTTTCCTCTGAAAGGAAGCA 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 TTAAGATGTTAACTCCGAGTTTCGGGGAGCCTGGACAGTGTTTTCCTCTGAAAGGAAGCA 1169
Query 1019 ATGGCTATGTTCTAGTCAGGCTAAGAGCACCAATAATTCCAGAGGCCGTTACCTTGGAGC 1078
|||| |||||||||||||||||||||||||||||||||||||| || ||||| ||||| |
Sbjct 1170 ATGGATATGTTCTAGTCAGGCTAAGAGCACCAATAATTCCAGAAGCTGTTACTTTGGAAC 1229
Query 1079 ATGTCTCTGAGGCTGTAGCGTATGACAGATCGAGCGCCCCAAAGGATTGCCGGGTATCAG 1138
|||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1230 ATGTCTCTAAGGCTGTAGCATATGACAGATCGAGCGCCCCAAAGGATTGCCGTGTATCAG 1289
Query 1139 GATGGCTAGGTGACATAGATATGGAGACTGAAACCATGCCCATTCTTACAGAATTCAGTT 1198
||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||
Sbjct 1290 GATGGCTAGGTGACATAGATATGGAGACTGAGACAATGCCCCTTCTTACAGAATTCAGTT 1349
Query 1199 ACGACTTAGACAGGTCCAATGCACAGACATTCGACATTGCAGAGTCTGCTCATTCGGGAC 1258
||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 1350 ACGACTTAGACAGGTCCAATGCACAGACATTCGACATTGCAGACTCTGCTCACTCAGGAC 1409
Query 1259 TTGTCAACACTGTCAGGCTAGACTTCAATTCCAACCATGGAAGCTCTTCACACACTTGCA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 TTGTCAACACTGTCAGGCTAGACTTCAATTCCAACCATGGAAGCTCTTCACACACTTGCA 1469
Query 1319 TCTACCGCTTCAGGGTTCATGGCTGTCAACTAGACTCAGTCTCTGTTGTTCATGCTTGAT 1378
||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||
Sbjct 1470 TCTACCGCTTCAGGGTTCATGGCCGTGAACTAGACTCAGTCTCTGTTGCTCATGCTTGAT 1529
Query 1379 CTGAA-GTCCACGTGAAACTTTTCTTCTATTTGTAACAT-C--t-t--t---t-t-t-t- 1424
||||| |||||||| ||||||||||||| |||||||||| | | | | | | | |
Sbjct 1530 CTGAAAGTCCACGTCAAACTTTTCTTCTCTTTGTAACATTCCCTCTAATAGATATCTCTC 1589
Query 1425 tt--------GT-T-AGTTTGTGTGGTGGGAAAGCTTCT---AGTCTGTAATCAGAATCA 1471
|| || | ||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1590 TTCTTTTTTTGTGTTAGTTTATGTGGTGGGAAAGCTTCTCTTAGTCTGTAATCAGAATCA 1649
Query 1472 TTTGGTTGTATTCGTGCTTATTATTTTTCAAATCTGTTTTGGTT 1515
|||||||||||||||| |||||| || ||||||||||||||||
Sbjct 1650 TTTGGTTGTATTCGTGATTATTAGCTT-CAAATCTGTTTTGGTT 1692
> AT5G04990.1 | Symbols: SUN1, ATSUN1 | SAD1/UNC-84 domain protein
1 | chr5:1471481-1473964 REVERSE LENGTH=1827
Length=1827
Score = 702 bits (380), Expect = 0.0
Identities = 1067/1387 (77%), Gaps = 94/1387 (7%)
Strand=Plus/Plus
Query 7 ATGTCGGCATCAACGGTGTCAATCACCGCTAGTCCTACGAG-GGCAATTAGGCGGACGCC 65
|||||||||||||||||||| |||||||||| | | || | || | ||| ||||||||
Sbjct 195 ATGTCGGCATCAACGGTGTCGATCACCGCTAATACGGCG-GCAGCGACTAGACGGACGCC 253
Query 66 GGTTCTCT-CCGGTGAGAATAAATCCAATTTTGATTTCCCGCCGAGCGAATCTCATGCCA 124
| |||| | |||| ||||| ||||| || ||||||| ||| | |||||||| | ||| |
Sbjct 254 GATTCT-TGCCGGAGAGAAAAAATCAAACTTTGATTACCCTCAAAGCGAATCGCTTGCGA 312
Query 125 A-TGCGGCAATTGGAGAGTCTTCCGCTGGTACGAACAAG-GATCTGATTCGCTCCGAGGC 182
| | || |||| | | ||| ||||||| | || ||||||| ||| || ||
Sbjct 313 ACGGTGG-TGTTGG-G-G-AAGCCGGTGGTACG-AGTAGAGATCTGAGCCGCGGTGAAGC 367
Query 183 TGCCGC-TGAGAGATCTAACACCTAC--GACGTCGGTCCTGTGACTAGGAA-ATCGGGAT 238
| || | ||| ||||| || || || | ||||||||||| | ||| || | |
Sbjct 368 TACC-CTTGATCGATCT--CAGGGACAAGATTTGGGTCCTGTGACGA-GAAGGTCTGTTT 423
Query 239 CCACCGCGACGGGGACTAATACAACCACCACGCAGCGTCGAACGCGGAA-GTCT-CAGGG 296
|| | ||||||||||||||||| ||| | |||||||| || |||||||| || | | |
Sbjct 424 CCGCTGCGACGGGGACTAATACCACCGCTACGCAGCGCCGGACGCGGAAGGT-TGC-GAC 481
Query 297 GAATAAGACAGATAAGGGGCAGTGGAAGACAGTGGTTAGGGTATTCGCGAAGCAATTTGG 356
|||| | || || | || ||||||||||||||| ||| |||| |||||||| ||||
Sbjct 482 TCCTAAGTCTGAGAAAGCGCGGTGGAAGACAGTGGTGAGGATATTTGCGAAGCAGCTTGG 541
Query 357 GGCTCTTTTG-TTACTTGTTGGGTTGATTCAATTGATTAGGAA-ATTGACTT-TGAAGGA 413
|| |||||| | | |||||||||| |||||||||| ||||| | ||| || | ||||
Sbjct 542 TGCGCTTTTGATCA-TTGTTGGGTTAATTCAATTGACGAGGAAGA-TGA-TTCTCAAGGC 598
Query 414 TTCGTCTCTATCTTCTTCGAATTTC--CCAATTGAAACGGAAATGGTGCTTTCGGAATTG 471
||| |||| || ||| || ||||| | | ||||||||| |||| | |||||| ||||
Sbjct 599 TTCTTCTCCGTCCTCTCCG-ATTTCTTCTTA-TGAAACGGAGATGGCGTTTTCGGGATTG 656
Query 472 GAGAGTCGGATTTCGGCTGTTGATGGT-TTGGTAAAGACTACTACGAAGAT-GATGCAGG 529
|| || || ||| ||| || |||||| || || ||| |||| ||||| | ||||||||
Sbjct 657 GAAAGCCGAATTGCGGAAGTAGATGGTCTT-GTTAAGGCTACGACGAA-TTCGATGCAGG 714
Query 530 TTCAAGTTGAATTTCTTGATAAGAAGATGGAAAGCGAATC--AAGAGCATTGAGGC-AGA 586
||||||||||||| ||||||||||| ||||| || ||| | ||| || || |||| |||
Sbjct 715 TTCAAGTTGAATTGCTTGATAAGAAAATGGAGAGGGAAGCAAAAGTGC-TT-AGGCAAGA 772
Query 587 CGATAGATTCCACATCTTCTGCGTTGCAGAGTGGGTTGAAGAAGGTAGAGTCTAAG-ACG 645
|| || | | ||||||| || ||||||| |||||||||| |||| ||| || ||
Sbjct 773 -AATCGAGAGGAAAGCTTCTGCATTTCAGAGTGAGTTGAAGAAGATAGAATCT-AGAACT 830
Query 646 GAGAGA-TTGCAGGTTTCCGTAGATG-AGTTAAATGCTAAACCTTTGGTGTCTAGAGAGG 703
||| | | | || || ||||||| || ||||||||||||||| |||| | | ||| |
Sbjct 831 GAGTCACTAG-AGAAGTCTGTAGATGAAG-TAAATGCTAAACCTTGGGTGACGAAAGATG 888
Query 704 AATTAGAGA-GAGTTTACGAGGAGTTGAAGAAGGGTAAGGCCGGTGATTCTGC------T 756
| ||||||| || |||| ||||| |||||||||| || | | ||||||||| |
Sbjct 889 AGTTAGAGAGGA-TTTATGAGGAACTGAAGAAGGGGAATGTTGATGATTCTGCTTTTAGT 947
Query 757 --G-TTAACATTGATGAATTGAGGGCTTATGCTCGTGACGT-AGTGGAGAAAGAGATTGG 812
| ||| |||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 948 GAGATTAGCATTGATGAATTGAGGGCTTATGCTCGTGATATTA-TGGAGAAAGAGATTGA 1006
Query 813 AAAGCATGCTGCTGATGGCCTTGGGCGAGTAGACTATGCGTTAGCGTCTGGTGGGGCTTT 872
|||||||||||||||||||||||| ||||| || ||||| || || |||||||| |||||
Sbjct 1007 AAAGCATGCTGCTGATGGCCTTGGCCGAGTTGATTATGCATTGGCTTCTGGTGGTGCTTT 1066
Query 873 TGTAATGGGGCATTCGGATCCGTT-TCTTGTTGG-AAATGGGGGTATTTGGTTTGGGACA 930
||| |||| |||||| ||||| || ||||||||| ||| ||| ||| ||||||| |||
Sbjct 1067 TGTGATGGAGCATTCAGATCC-TTATCTTGTTGGTAAA-GGGAGTAGCTGGTTTGCGACT 1124
Query 931 AGCAGGCGGCGGGTTCATAGCAAA-GCGGTTAAGATGTTAACTCCGAGTTTCGGGGAGCC 989
| || |||||| | ||||| | || ||||||||||||||| ||||||| ||||| |||||
Sbjct 1125 ACCATGCGGCGCGCTCATA-CGAATGCGGTTAAGATGTTATCTCCGAGCTTCGGTGAGCC 1183
Query 990 TGGACAGTGTTTTCCTCTGAAAGGAAGCAATGGCTATGTTCTAGTCAGGCTAAGAGCACC 1049
|||||| ||||||||||||||||| ||| | |||||||| | | ||||||| |||| |||
Sbjct 1184 TGGACAATGTTTTCCTCTGAAAGGTAGCGAGGGCTATGTGCAAATCAGGCTGAGAGGACC 1243
Query 1050 AATAATTCCAGAGGCCGTT-ACCTTGGAGCATGTCTCTGAG-GCTGTAGCGTATGACAGA 1107
||| || |||||||| || || ||||||||||| || || | |||||| || ||||||
Sbjct 1244 AATCATACCAGAGGCT-TTCACATTGGAGCATGTAGCTAAGAG-TGTAGCCTACGACAGA 1301
Query 1108 TCGAGCGCCCCAAAGGATTGCCGGGTATCAGGATGGCT--AGGTGACATAGA-TA-T--G 1161
||||| || ||||| |||||||| |||||||||| || | | ||| || | | |
Sbjct 1302 TCGAGTGCTCCAAAAGATTGCCGTGTATCAGGATCCCTGCAAG-GACCG-GAATCCTCAG 1359
Query 1162 -G-AGACTGA-AACCATGCC-CATTCTTACAGAATTCAGTTACGACTTAGACAGGTCCAA 1217
| |||| || ||| |||| | |||| ||||| |||| ||||||| |||||||||| ||
Sbjct 1360 CGGAGACAGAGAAC-ATGCAAC-TTCTAACAGAGTTCACTTACGACCTAGACAGGTCGAA 1417
Query 1218 TGCACAGACATTCGACAT-TGCAGAGTCTGCTCAT--TCGGGACTTGTCAACACTGTCAG 1274
||||| |||||| |||| | |||||| ||| || || || || | ||||||||
Sbjct 1418 CGCACAAACATTCAACATCTT-AGAGTCA--TCAAGCTCTGGTCTAATCGATACTGTCAG 1474
Query 1275 GCTAGACTTCAATTCCAACCATGGAAGCT-CTTCACACACTTGCATCTACCGCTTCAGGG 1333
||||||||||| || ||||| |||||| || | ||||||||||||||||| |||||||
Sbjct 1475 GCTAGACTTCACCTCGAACCACGGAAGCGACT-CGCACACTTGCATCTACCGGTTCAGGG 1533
Query 1334 TTCATGG 1340
|||||||
Sbjct 1534 TTCATGG 1540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75953424585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5