BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478415
Length=2236
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10800.1 | Symbols: BZIP28 | Basic-leucine zipper (bZIP) tra... 3554 0.0
> AT3G10800.1 | Symbols: BZIP28 | Basic-leucine zipper (bZIP) transcription
factor family protein | chr3:3379254-3381621 FORWARD
LENGTH=2291
Length=2291
Score = 3554 bits (1924), Expect = 0.0
Identities = 2139/2244 (95%), Gaps = 10/2244 (0%)
Strand=Plus/Plus
Query 1 TTGTTCCAAAGTTAAAAACCGTGTGGAATCATCGAGAAGCGAAGCCAGAAGAAA-AATCA 59
|||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| ||
Sbjct 1 TTGTTCCAAAGTTATAAACCGTGTGGAACCATCGAGAAGCGAAGCCAGAATAAATTTTCG 60
Query 60 AACCCTCCGACGATGACGGAATCAACATTCGTTATTGCTCCTCCGCCGGAGATACCTAAT 119
|| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 61 AATCCTCCGACGATGACGGAATCAACATCCGTGGTTGCTCCTCCGCCGGAGATACCTAAT 120
Query 120 CTGAACTCTAGCATGTTTTCTGAATCCGATATGATTTCTATTCCGCCGCTAGATCCTCTT 179
|||||| |||||||||||||||| |||||| || ||||||||||||||||||||||||||
Sbjct 121 CTGAACCCTAGCATGTTTTCTGAGTCCGATTTGTTTTCTATTCCGCCGCTAGATCCTCTT 180
Query 180 TTCCTATCTGATTCTGATCCGATTTCAATGGATGCGCCGATCTCCGATCTCGACTTCTTA 239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 TTCCTATCTGATTCTGATCCGATTTCAATGGATGCGCCAATCTCCGATCTCGACTTCTTA 240
Query 240 CTCGACGATGAGAACGGAGATTTTGCTGATTTCGATTTCTCGTTTGAGAATTCTGATGAT 299
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 241 CTCGACGATGAGAACGGAGATTTCGCTGATTTTGATTTCTCGTTTGATAATTCTGATGAT 300
Query 300 TTCTTCGCTTTCGATTTGGCGGAGCCCGCGGTGGTGATCCCTGAGGAGATCGGGAATAGT 359
||||||| ||||||||| |||||||||||||||||||||||||||||||||| || | |
Sbjct 301 TTCTTCGATTTCGATTTATCGGAGCCCGCGGTGGTGATCCCTGAGGAGATCGGTAACAAT 360
Query 360 CGTTCGAATTTGGACTCATCGGAGAACAGAAGCGGCGATGGAGGTTTAGAAGGACGATCT 419
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 361 CGTTCGAATTTGGACTCATCGGAAAACAGAAGCGGCGATGGAGGTTTAGAAGGAAGATCT 420
Query 420 GATTCTGTTCATTCTCAGGTTTCATCTCAAGGCTCAAAGACTTTTGTGTCCGACACCGTT 479
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 GAGTCTGTTCATTCACAGGTTTCATCTCAAGGCTCCAAGACTTTTGTGTCCGACACCGTT 480
Query 480 GACGCATTATCCTCCCCTGAATCAATCAATCACCAGAAATCTTCTGTCAGCAAGAGGAAG 539
||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 481 GACGCATCATCCTCCCCTGAATCAAGCAATCACCAGAAATCTTCTGTTAGCAAGAGGAAG 540
Query 540 AAGGAAAATGGAGACTCCAGTGGCGAATTAAGGAGCTGCAAGTACCAAAAGTCTGATGAT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 AAGGAAAATGGAGACTCCAGTGGCGAATTAAGGAGCTGCAAGTACCAAAAGTCCGATGAT 600
Query 600 AAATCAGTCGCTACGAACAACGAAGGTGATGAT---GACGACAAGAGGAAGTTGATAAGG 656
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 601 AAATCAGTCGCTACGAACAACGAAGGTGATGATGACGACGACAAGAGGAAGTTGATAAGG 660
Query 657 CAGATTAGGAACCGTGAAAGTGCTCAGCTTTCGAGGTTGAGGAAGAAGCAACAAACTGAG 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CAGATTAGGAACCGTGAAAGTGCTCAGCTTTCGAGGTTGAGGAAGAAGCAACAAACTGAG 720
Query 717 GAGCTTGAAAGAAAAGTGAAGAGTATGAATGCAACCATTGCTGAATTGAATGGTAAGATT 776
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 721 GAGCTTGAAAGAAAAGTGAAGAGTATGAATGCTACCATTGCTGAATTGAATGGTAAGATT 780
Query 777 GCTTATGTTATGGCTGAGAATGTAGCTTTAAGGCAACAAATGGCTGTTGCTTCTGGTGCT 836
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 781 GCTTATGTTATGGCTGAGAATGTCGCTTTAAGGCAACAAATGGCTGTTGCTTCTGGTGCT 840
Query 837 CCTCCTATGAATCCTTATATGGCTGCACCGCCTTTACCGTATCAATGGATGCCCTATCCG 896
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 841 CCTCCTATGAATCCTTATATGGCTGCCCCGCCTTTACCGTATCAATGGATGCCGTATCCG 900
Query 897 CCTTATCCTGTTAGGGGCTATGGATCACAGACTCCATTGGTTCCCATTCCCAAGTTAAAT 956
|| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||||
Sbjct 901 CCGTATCCTGTTAGGGGATATGGATCACAGACACCTTTGGTTCCCATTCCTAAGTTAAAT 960
Query 957 CCTAAGCCTGTCTCGAGTTGTAGACCGAAGAAGGCAGAGAGTAAGAAGAATGAGGGCAAA 1016
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 961 CCTAAGCCTGTCTCGAGTTGTAGACCGAAGAAGGCAGAGAGTAAGAAGAATGAGGGTAAA 1020
Query 1017 AGTAAGCTCAAGAAGGTTGCTAGTATTAGTTTTATTGGAATTCTCTTCTTTATGTTCTTG 1076
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1021 AGTAAGCTCAAGAAGGTTGCTAGTATTAGTTTTATTGGAATTCTCTTCTTTGTCTTCTTG 1080
Query 1077 TTTGGTACATTGGTTCCGTTTATGAATGTAAATTATGGAGGAGAAGGTGGAAGCTTTGGC 1136
||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1081 TTTGGTACATTGGTTCCTTTTATGAATGTAAATTTTGGAGGAGAACGTGGAAGCTTTGGC 1140
Query 1137 GGTTTGTCTAAATATGATGGTCACCGGTATTACGATGAACATAAGGGGAAGGTTCTAATG 1196
|||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||
Sbjct 1141 GGTTTGTCTAAATATGATGGCCACCGGTATTACGATGAACATAAGGGGAGGGTTTTAATG 1200
Query 1197 GTCGGCGATGGTTCTGATGTTAGAAGAGAA-AGTGGGATTTCTGAAGGAAATATCCATTC 1255
||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 1201 GTCGGCGATGGTTCTGATGTTAGAAGA-AATAGTGGAATTTCTGAAGGAAATATCCATTC 1259
Query 1256 TAGTAGGATAATTCATGGTGATAGAGATAGTTGTGGAGGAGTAGATTATAATGCTCATCC 1315
||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TAGTAGGATTAGTCATGGTGAGAGAGATAGTTGTGGAGGAGTAGATTATAATGCTCATCC 1319
Query 1316 GAAAGTAGAAGGACGATCAAGTTCATTGAGCAATGCGAGTGATCCTCTCTTTGCTTCTCT 1375
|||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1320 GAAAGTAGAAGGACGACCAAGTTCGTTGAGCAATGCCAGTGATCCTCTCTTTGCTTCTCT 1379
Query 1376 CTATGTCCCAAGAAACGATGGGCTTGTGAAGATCGATGGGAACTTGATAATTCACTCTGT 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CTATGTCCCAAGAAACGATGGGCTTGTGAAGATCGATGGGAACTTGATAATTCACTCTGT 1439
Query 1436 TTTGGCGAGCGAGAAAGCAACGGCTCTAGGGAAGAAGAATATCACTGAAACAGTCAAAAG 1495
|||||||||||||||||||| || | |||| ||||||||||||||||||||||| ||||
Sbjct 1440 TTTGGCGAGCGAGAAAGCAAGGGGTTTAGGAAAGAAGAATATCACTGAAACAGTAAAAAC 1499
Query 1496 TAAAGAACCGGATTTGACCATGCCTGGTGCACTGTCTTCTGCTAT-AGCTGTTCCGGAGG 1554
||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| ||
Sbjct 1500 TAAAGAACCGGATTTGACCATTCCTGGTGCACTGTCTTCTGC-ATTAGCTGTTCCGGGGG 1558
Query 1555 TAAGAGGAAATGCAGCAATGCATCCACATTCAACGGCTCTCTCTTCTGAAGGGAAAAGAC 1614
||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 1559 TAAGAGGAAATGCAGCAATGCTTCCGCATTCAACAGCTCTCTCTTCTGAAGGGAAAAGAC 1618
Query 1615 TTCACCAGTGGTTTCATGAAGGTGGCTCAGGGACACTAATGGATTACAGCATGTGCACCG 1674
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1619 TTCACCAATGGTTTCATGAAGGTGGCTCAGGGCCACTAATGGATTACAGCATGTGCACCG 1678
Query 1675 AGGTTTTCCAGTTTGATATTGCTCCCGGTGCTATAGTCCCATCATCAGTCTCCAACATTT 1734
||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||
Sbjct 1679 AGGTTTTCCAGTTTGATATTGCTCCTGGTGCTATAGTCCCGTCATCAGTCTCCAGCATTT 1738
Query 1735 CTGCGGAGCATCTCCAAAATGTCACCACCCACGGCAAGAGAATGAAGAACAGGAGAATTC 1794
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1739 CTGCGGAGCATCTCCAAAATGTCACTACCCACGGCAAGAGAATGAAGAACAGGAGAATCC 1798
Query 1795 TCGAGGGACTTCCTGTTTCACTTGTGGCGTCTGAGCTCAATATTACCGGAACTCAGCCGA 1854
| ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| |
Sbjct 1799 TTGAGGGACTTCCTGTTTCACTTGTGGCGTCAGAGCTCAATATCACCGGAACCCAGCCAA 1858
Query 1855 ACAAAGACGCTCAAAACAAGACCTTTAATGGAAACACTAACAAACCCACATCATCATCCT 1914
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 ACAAAGACGCTCAAAATAAGACCTTTAATGGAAACACTAACAAACCCACATCATCATCCT 1918
Query 1915 CCATGGTTGTCTCAGTGTTGCTTGATCCAAGAGAGGTCGTCGACTCTGAAAACGACAGAG 1974
||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||
Sbjct 1919 CCATGGTTGTCTCAGTGTTACTTGATCCAAGAGAGGTCGTTGACTCTGAAACCGACAGAG 1978
Query 1975 TGGTGCCCCCAAACCCAAAATCACTTTCCCGGATCTTTGTGGTGGTGCTTCTTGACAGTG 2034
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 TGGTTCCCCCAAACCCAAAATCACTTTCCCGGATCTTTGTGGTGGTGCTTCTTGACAGTG 2038
Query 2035 TCAAGTACGTTACCTACTCATGCGTTCTTCCTCGGTCGGGTCTCCATCTCGTAGCCACCT 2094
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2039 TCAAGTACGTTACCTACTCATGCGTTCTTCCTCGATCGGGTCTCCATCTCGTAGCCACCT 2098
Query 2095 GATTTGTGCTACTCAGATCTTGACCTTAAGTAGGAGAACATTGACTTGTTTATACATACA 2154
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2099 GATTTGAGCTACTCAGATCTTGACCTTAAGTAGGCGAACATTGACTTGTTTATACATACA 2158
Query 2155 GACCTTAATGACtttttttcc-tgtgttgtataact-ttatgttttaaggttttggtttt 2212
|||||| ||||||||||||| |||||||||||||| ||||||| ||||||||||| |||
Sbjct 2159 GACCTTGTTGACTTTTTTTCCCTGTGTTGTATAACTCTTATGTTCTAAGGTTTTGGATTT 2218
Query 2213 taattttGAGATAACCAGAAAGTG 2236
|||||||||||||| || ||||||
Sbjct 2219 TAATTTTGAGATAAGCATAAAGTG 2242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110943204450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5