BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478421
Length=890
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10870.1 | Symbols: MES17, ATMES17 | methyl esterase 17 | ch... 1363 0.0
> AT3G10870.1 | Symbols: MES17, ATMES17 | methyl esterase 17 |
chr3:3401078-3402672 REVERSE LENGTH=1041
Length=1041
Score = 1363 bits (738), Expect = 0.0
Identities = 843/894 (94%), Gaps = 5/894 (1%)
Strand=Plus/Plus
Query 1 ACACAGAGCACTCTTTGGaaaaaaaCCC-TTAAAATCACAGGCAAAACTCCGGCGTAATC 59
|||||||||| || ||| ||||| ||| ||||||| |||||||| |||||||||||||
Sbjct 1 ACACAGAGCATTCCGTGG-AAAAACCCCAATAAAATCTCAGGCAAATCTCCGGCGTAATC 59
Query 60 AATGGCGGAGGAGAATCAAGAAGAAACCGTAGACCTCAAACCAGGAAGAAAACCACCACA 119
||||||||||||||||||||||||||| |||| ||||||||| | ||||||||||||||
Sbjct 60 GATGGCGGAGGAGAATCAAGAAGAAACCCTAGAACTCAAACCAAGTAGAAAACCACCACA 119
Query 120 CTTTGTGCTAATACACGGCATGAGCTTAGGATCATGGTGCTGGTACAAGATCAAATGTCT 179
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTTTGTGCTAATACATGGCATGAGCTTAGGATCATGGTGCTGGTACAAGATCAAATGTCT 179
Query 180 CATTGAAGTCTCTGGCTTCACCGTCACTTGTATCGACCTCAAATCCTCCGGCATCGATCC 239
||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 180 CATGGAAGTCTCTGGCTTCACCGTCACTTGCATCGACCTCAAATCCTCCGGCATCGATTC 239
Query 240 TTCATCCGCCGATTCTCTCACTACCTTCGACCAATACAACCAACCACTCATCGACTTCCT 299
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTCATCCGTGGATTCACTCACTACCTTCGACCAATACAACCAACCACTCATCGACTTCCT 299
Query 300 CTCCTCTTTCCCCGAGCAAGAACAGGTGATACTTGTGGGTCACAGTGCAGGAGGGCTTAG 359
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTCCTCTTTCCCCGAACAAGAACAGGTGATACTTGTGGGTCACAGTGCAGGAGGGCTTAG 359
Query 360 CGTAACGAGCGCGATACAGAGATTCCCTAAGAAGATCTGTCTCGCTGTTTTTATCGGAGC 419
| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 CCTAACGAGTGCGATACAGAGATTCCCTAAGAAGATCTGTCTCGCTGTTTTTATTGGAGC 419
Query 420 TTCGATGCTCAAATACGGGCTTCAGACCGATGAAGACATGAAAGATGGAGTGCCTGATCT 479
||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 420 TTCGATGCTCAAAAACGGGCTTCAGACAGATGAAGATATGAAAGATGGAGTGCCTGATCT 479
Query 480 ATCAGAACATGGTGATGTCTACGAGCTCGGTTTTGGTTTAGGACCTGAGAATCCTCCAAC 539
||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||
Sbjct 480 ATCAGAACATGGTGATGTCTACGAGCTTGGTTTTGGTCTAGGACCGGAGAATCCTCCCAC 539
Query 540 CAGTGCTATTATCAAACCTGAATTCCGTCGAAAACTCCTATACCACATGAGTCCTCAACA 599
||||||||||||||||||||||| ||| |||||||| || ||||||||||||||||||||
Sbjct 540 CAGTGCTATTATCAAACCTGAATACCGACGAAAACTACTTTACCACATGAGTCCTCAACA 599
Query 600 GGAATGTTCATTGGCTGCACTAATGATGAGACCAGCACCAATCTTGGCGTTAACGACGGC 659
||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||| ||
Sbjct 600 GGAATGTTCCTTGGCTGCATTAATGATGAGACCAGCACCAATTTTGGCGTTAACGACAGC 659
Query 660 AAAACTGGACG-A-A-GAAAACGAAACTGGACAAGAGGAGCAAGTGCCGCGCGTGTATAT 716
||||||||| | | | ||||| |||| ||||||||||||||||||||||||||||| ||
Sbjct 660 AAAACTGGAAGAAGAGGAAAAAGAAAAAGGACAAGAGGAGCAAGTGCCGCGCGTGTACAT 719
Query 717 CAAGACATTACTCGACCGGGTCATGAAACCGGAGCAGCAAGACGCGATGATAAGACGGTG 776
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CAAGACGTTACTCGACCGGGTCATGAAACCGGAGCAGCAAGACGCGATGATAAGACGGTG 779
Query 777 GCCACCGAGCCAAGTTTACGAATTGGAGAGCGACCATTCTCCTTTCTTCTCTAACCCTTT 836
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GCCACCTAGCCAAGTTTACGAATTGGAGAGCGACCATTCTCCTTTCTTCTCTAACCCTTT 839
Query 837 TGTTCTCTTCGGTTTACTCATCAAAGCTGCCGTTTCCGTCGGTTCTATCTAAAA 890
||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGTTCTCTTTGGTTTACTCATCAAAGCTGCCGTTTCCGTCGGTTCTATCTAAAA 893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43452537155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5