BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478424
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10900.1 | Symbols: | Glycosyl hydrolase superfamily protei... 983 0.0
AT3G30540.1 | Symbols: | Glycosyl hydrolase superfamily protei... 808 0.0
AT3G10890.1 | Symbols: | Glycosyl hydrolase superfamily protei... 643 0.0
> AT3G10900.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr3:3410252-3412070 REVERSE LENGTH=1227
Length=1227
Score = 983 bits (532), Expect = 0.0
Identities = 632/680 (93%), Gaps = 8/680 (1%)
Strand=Plus/Plus
Query 466 AGAGTGAATACATTTACTAAAGTTGCATACAAAGATGAACCAGCCATTATGGCTTGGCAG 525
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 535 AGAGTGAATACATTTACTAAAGTTGCATACAAAGATGAACCCGCCATTATGGCTTGGCAG 594
Query 526 CTTATGAACGAGCCACGATGCGGT-TCAGATCGA-AGTGGAAAAACCCTTATGGCTTGGA 583
|||||||||||||||||||||||| | ||| | ||||||||||||||||||| |||||
Sbjct 595 CTTATGAACGAGCCACGATGCGGTGT-GGAT-AAGAGTGGAAAAACCCTTATGGATTGGA 652
Query 584 TTAATGAAATGGCTCCTTACGTAAAATCAGTTGATCCAAACCATCTCCTCTCCACTGGTC 643
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 653 TTAATGAAATGGCTCCTTTTGTAAAATCAGTTGATCCAAACCATCTCCTCTCTACTGGTC 712
Query 644 ATGAAGGTTTCTATGGTGACTCATCTCCTCAAAGAAAGAATACTCTAAATCCAGTGTCAG 703
||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| ||||
Sbjct 713 ATGAAGGTTTCTATGGTGATTCATCTCCTGAAAGAAAGAATTCTCTAAATCCAGTTTCAG 772
Query 704 CCAACAGAGTTGGAGCTGATTTCATAGCTAATCACAATATTGATGCCATTGATTTCGCAT 763
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 773 CCAACACAGTTGGAGCTGATTTCATAGCTAATCACAATATCGATGCCATTGATTTCGCAT 832
Query 764 CGATGCACTGTGGAACTGACTTATGGTTGCCAAA-GTTGAATCAGAACTCTCGATTGGAG 822
||||||||||||||| |||||||||||| |||| |||| |||||||||||||| |||
Sbjct 833 CGATGCACTGTGGAAGTGACTTATGGTT-TCAAAGGTTGGATCAGAACTCTCGACTGGCC 891
Query 823 TTCATAAGAAGATGGCTCCAAGGCCACATCGAAGATGCGCAGAACATTCTTAAAAAACCT 882
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 892 TTCATAAAAAGATGGCTTGAAGGCCACATCGAAGATGCGCAGAACATTCTTAAAAAACCT 951
Query 883 CTAATTCTAGCAGAATTCGGGTTAGGAACGGACACACCAGGTTACACTCTGGCTAATAGA 942
|||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 952 GTAATTCTAGCAGAATTTGGGTTAGGATCGGACACACCACGTTACACTCTGGCTAATAGA 1011
Query 943 GACGCCGTATTCACCACAACCTATGACATCATTTACGCGTCTGCGCAAAAAGGCGGTCCG 1002
|||| ||| ||||||||||| ||||||||||||||||| |||||||||||||||||| ||
Sbjct 1012 GACGGCGTGTTCACCACAACATATGACATCATTTACGCATCTGCGCAAAAAGGCGGTTCG 1071
Query 1003 GCCGTGGGAGCATTGTTTTGGGAACTTATTAGCGACGGCATGAGCAACTTTGCAGGTCCC 1062
|||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1072 GCCGCGGGAGCATTGTTTTGGGAGGTTATTAGCGAAGGCATGAGCAACTTTGCAGGTCCC 1131
Query 1063 TCCTCCATTATACTTAGTGACAAATCGTCGACGGTCAATATTATAAGTGAGCA-GTCAAG 1121
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | || |
Sbjct 1132 TCCTCCATTATACTTAGTGACAAGTCGTCGACGGTTAATATTATAAGTGAGCATG-CACG 1190
Query 1122 AAAGCTGGGTTTGATTGGTG 1141
|||| |||||||| ||||||
Sbjct 1191 AAAGATGGGTTTGCTTGGTG 1210
Score = 654 bits (354), Expect = 0.0
Identities = 404/428 (94%), Gaps = 3/428 (1%)
Strand=Plus/Plus
Query 1 ATGAAGTATTTGTGTTTTATTGTGTC-TTTAGCGATTGTGACCGCACAAAGCTATGTAGG 59
||||||| |||||||||||| ||| | |||||||||||||| ||||||||||||||||||
Sbjct 1 ATGAAGTGTTTGTGTTTTATCGTG-CTTTTAGCGATTGTGATCGCACAAAGCTATGTAGG 59
Query 60 AGTAGAAGCTGCGTCGAGTAATGGGTTCGTGAGCAGGAATGGCGTCCAATTTATTCTCAA 119
||||||||||||| | ||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct 60 AGTAGAAGCTGCGCCAAGTGATGGGTTCGTGAGCAGAAATGGCGTCCAATTTATTCTAAA 119
Query 120 TGGGAAACCATTTTACGCCAATGGCTTCAATGCCTACTGGCTAGCGTACGAAGCCACCGA 179
|||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||
Sbjct 120 TGGGAAACCATTTTACGCTAATGGCTTCAATGCTTACTGGCTCGCGTACGAAGCTACCGA 179
Query 180 TCCGGCCACAAGATTTAAGATCACTAATGTGTTTCAAAACGCAACTAGTCACGGTTTGAC 239
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 180 TCCGACCACAAGATTTAAGATCACTAATGTGTTTCAAAACGCAACTAGTCTCGGTTTGAC 239
Query 240 CATCGCCCGCACCTGGGGGTTCCGAGATGGCGCCTTATACCGCGCTCTCCAAACAGCCCC 299
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 240 CATCGCCCGCACCTGGGGGTTCCGCGATGGCGCCATATACCGCGCTCTCCAAACAGCCCC 299
Query 300 TGGTTCCTACGATGAACACACTTTTCAGGTTTTGGATTTTGTGATAGCCGAAGCAAAAAG 359
|||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||
Sbjct 300 TGGTTCCTACGATGAACAAACGTTTCAGGGTTTGGATTTTGTGATAGCCGAAGCAAAAAG 359
Query 360 AGTCGGTATAAAATTGATAATCCCCCTTGTCAATAATTGGGATGACTACGGAGGGaaaaa 419
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 360 AATCGGTATAAAATTGATAATCCTCCTTGTCAATAATTGGGATGACTACGGAGGGAAAAA 419
Query 420 aaCAATAC 427
| ||||||
Sbjct 420 A-CAATAC 426
> AT3G30540.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr3:12144792-12146502 REVERSE LENGTH=1017
Length=1017
Score = 808 bits (437), Expect = 0.0
Identities = 529/573 (92%), Gaps = 7/573 (1%)
Strand=Plus/Plus
Query 466 AGAGTGAATACATTTACTAAAGTTGCATACAAAGATGAACCAGCCATTATGGCTTGGCAG 525
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 448 AGAGTGAATACATTTACTAAAGTTGCATACAAAGATGAACCAGCCAGTATGGCTTGGCAG 507
Query 526 CTTATGAACGAGCCACGATGCGGT-TCAGATCGAAGTGGAAAAACCCTTATGGCTTGGAT 584
|||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||
Sbjct 508 CTTATGAACGAGCCACGATGCGGTGTG-GATAGAAGTGGAAAAACCCTTATGGCTTGGAT 566
Query 585 TAATGAAATGGCTCCTTACGTAAAATCAGTTGATCCAAACCATCTCCTCTCCACTGGTCA 644
|||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 567 TAATGAAATGGCTCTTTTTGTAAAATCAGTTGATCCAAACCATCTCCTCTCTACTGGTCA 626
Query 645 TGAAGGTTTCTATGGTGACTCATCTCCTCAAAGAAAGAATACTCTAAATCCAGTGTCAGC 704
|||||||||||||||||||||||||||| ||||||||||| | ||||||||||| |||||
Sbjct 627 TGAAGGTTTCTATGGTGACTCATCTCCTGAAAGAAAGAATTCACTAAATCCAGTTTCAGC 686
Query 705 CAACAGAGTTGGAGCTGATTTCATAGCTAATCACAATATTGATGCCATTGATTTCGCATC 764
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 687 CAACACAGTTGGAGCTGATTTCATAGCTAATCACAATATCGATGCCATTGATTTCGCATC 746
Query 765 GATGCACTGTGGAACTGACTTATGGTTGCCAAAG-TTGAATCAGAACTCTCGATTGGAGT 823
|||||||||||||| |||||||||||| | |||| ||| |||||||||||||||||| |
Sbjct 747 GATGCACTGTGGAAGTGACTTATGGTTTC-AAAGGTTGGATCAGAACTCTCGATTGGCCT 805
Query 824 TCATAAGAAGATGGCTCCAAGGCCACATCGAAGATGCGCAGAACATTCTTAAAAAACCTC 883
|||||| ||||||||| |||||||||||||||||||||| |||| |||||||||||||
Sbjct 806 TCATAAAAAGATGGCTTGAAGGCCACATCGAAGATGCGCAAAACAATCTTAAAAAACCTG 865
Query 884 TAATTCTAGCAGAATTCGGGTTAGGAACGGACACACCAGGTTACACTCTGGCTAATAGAG 943
|||||||||||||||||||||||||| | ||||||||| | |||||||||||||||||||
Sbjct 866 TAATTCTAGCAGAATTCGGGTTAGGATCAGACACACCACGCTACACTCTGGCTAATAGAG 925
Query 944 ACGCCGTATTCACCACAACCTATGACATCATTTACGCG-TCTGCGCAAAAAGGCGG-TCC 1001
||| ||| ||||||||||| |||||||||||||||| ||| ||||||||||||| ||
Sbjct 926 ACGACGTGTTCACCACAACATATGACATCATTTACGATATCTACGCAAAAAGGCGGCTC- 984
Query 1002 GGCCGTGGGAGCATTGTTTTGGGAACTTATTAG 1034
||||| |||||||||||||||||| |||||||
Sbjct 985 GGCCGCGGGAGCATTGTTTTGGGAGGTTATTAG 1017
Score = 357 bits (193), Expect = 1e-97
Identities = 218/230 (95%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 1 ATGAAGTATTTGTGTTTTATTGTGTC-TTTAGCGATTGTGACCGCACAAAGCTATGTAGG 59
||||||| |||||||||||| ||| | |||||||||||||| ||||||||||||||||||
Sbjct 28 ATGAAGTGTTTGTGTTTTATCGTG-CTTTTAGCGATTGTGATCGCACAAAGCTATGTAGG 86
Query 60 AGTAGAAGCTGCGTCGAGTAATGGGTTCGTGAGCAGGAATGGCGTCCAATTTATTCTCAA 119
||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 87 AGTAGAAGCTGCGCCAAGTGATGGGTTCGTGAGCAGGAATGGCGTCCAATTTATTCTCAA 146
Query 120 TGGGAAACCATTTTACGCCAATGGCTTCAATGCCTACTGGCTAGCGTACGAAGCCACCGA 179
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 147 TGGGAAACCATTTTACGCTAATGGCTTCAATGCCTACTGGCTCGCGTACGAAGCTACCGA 206
Query 180 TCCGGCCACAAGATTTAAGATCACTAATGTGTTTCAAAACGCAACTAGTC 229
||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 TCCAGCCACAAGATTTAAGATCACTAATGTGTTTCAAAACGCAACTAGTC 256
Score = 145 bits (78), Expect = 1e-33
Identities = 81/82 (99%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 346 GCCGAAGCAAAAAGAGTCGGTATAAAATTGATAATCCCCCTTGTCAATAATTGGGATGAC 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 GCCGAAGCAAAAAGAGTCGGTATAAAATTGATAATCCCCCTTGTCAATAATTGGGATGAC 318
Query 406 TACGGAGGGaaaaaaaCAATAC 427
||||||||||||||| ||||||
Sbjct 319 TACGGAGGGAAAAAA-CAATAC 339
> AT3G10890.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr3:3407455-3409000 REVERSE LENGTH=1245
Length=1245
Score = 643 bits (348), Expect = 0.0
Identities = 581/692 (84%), Gaps = 22/692 (3%)
Strand=Plus/Plus
Query 466 AGAGTGAATACATTTACTAAAGTTGCA-TACAAAGATGAACCAGCCATTATGGCTTGGCA 524
||||||||||||||||| ||||||| | ||||||||||||||| ||||||||| |||| |
Sbjct 538 AGAGTGAATACATTTACCAAAGTTG-AGTACAAAGATGAACCAACCATTATGGGTTGGGA 596
Query 525 GCTTATGAACGAGCCACGATGCGGTTCAGATCGAAGTGGAAAAACCCTTATGGCTTGGAT 584
|||||||||||| |||| |||| | |||||| ||||||||||||||||| |||||||||
Sbjct 597 GCTTATGAACGAACCACAATGCAGAGCAGATCCAAGTGGAAAAACCCTTACGGCTTGGAT 656
Query 585 TAATGAAATGGCTCCTTACGTAAAATCAGTTGATC-CAAACCATCTCCTCTCCACTGGTC 643
||||||||||||| ||| || ||||| ||||| | |||| ||||||||||| |||||||
Sbjct 657 GAATGAAATGGCTCTTTATGTGAAATCTGTTGA-CTCAAAGCATCTCCTCTCTACTGGTC 715
Query 644 ATGAAGGTTTCTATGGTGACTCATCTCCTCAAAGAAAGA-ATACTCTAAATCCAGT-GTC 701
|||||| ||||||||||||||||||||||||||||||| || |||||||||| || | |
Sbjct 716 TTGAAGGCTTCTATGGTGACTCATCTCCTCAAAGAAAGACAT-CTCTAAATCCGGTTG-C 773
Query 702 AGCCAACAGAG-TTGGAGCTGATTTCATAGCTAATCACAATATT-GATGCCATTGATTTC 759
||||||| | ||||| |||||||||| ||||||||||| | | |||||||||||||||
Sbjct 774 AGCCAAC-GTTCTTGGAACTGATTTCATCGCTAATCACAA-ACTCGATGCCATTGATTTC 831
Query 760 GCATCGATGCACTGTGGAACT-GACTTATGGTTGCCAAAGTTGAATCAGAACTCTCGATT 818
|||||||| |||| | | | ||||||||||| ||||| ||| || |||| ||||||||
Sbjct 832 GCATCGATTCACTCTT-ACCCCGACTTATGGTTTCCAAACTTGGATGAGAAATCTCGATT 890
Query 819 GGAGTTCATAAGAAGATGGCTCCAAGGCCACATCGAAGATGCGCAGAACATTCTTAAAAA 878
| || |||||| ||||||| || | ||| | |||||||| || ||||||||||||||
Sbjct 891 AAACTTGTTAAGAAAATGGCTCGAATGTCACCTTGAAGATGCACAAAACATTCTTAAAAA 950
Query 879 ACCTCTAATTCTAGCAGAATTCGGGTTAGGAACGGACACACCAGGTTACACTCTGGCTAA 938
||||||||| |||| |||||||||| | |||| |||||||||| ||||||| |||| |
Sbjct 951 ACCTCTAATCCTAGGAGAATTCGGGAAACCAACGAACACACCAGGCTACACTCAGGCTCA 1010
Query 939 TAGAGACGCCGTATTCACCACAACCTATGACATCATTTACGCGTCTGC-GCAAAAAGGCG 997
|||||||| || |||| | |||| | ||||| |||||||| |||||| | |||||||||
Sbjct 1011 GAGAGACGCAGTGTTCAACGCAACGTTTGACACCATTTACGAGTCTGCTG-AAAAAGGCG 1069
Query 998 GTCCGGCCGTGGGAGCATTGTTTTGGGAAC-TTATTAGCGACGGCATGAGCAACTTTGCA 1056
|||| || | ||||||||||||||| | | |||||||||| ||||||| ||||||| |
Sbjct 1070 GTCCAGCTGCAGGAGCATTGTTTTGGCA-CGTTATTAGCGATGGCATGAACAACTTTAAA 1128
Query 1057 GGTCCC-TCCTCCATTATACTTAGTGACAAAT-CGTCGACGGTCAATATTATAAGTGAGC 1114
| ||| || |||||| |||||||||| |||| || | ||||| |||||||||| ||||
Sbjct 1129 GACCCCCTC-TCCATTGTACTTAGTGA-AAATTCGACTACGGTTAATATTATAACTGAGG 1186
Query 1115 AGTCAAGAAAGCTGGGTTTGATTGGTGGGAAA 1146
| ||| ||||||||||||||||| |||| |||
Sbjct 1187 AATCACGAAAGCTGGGTTTGATTCGTGGAAAA 1218
Score = 436 bits (236), Expect = 2e-121
Identities = 371/435 (85%), Gaps = 14/435 (3%)
Strand=Plus/Plus
Query 1 ATGAAGTATTTGTGTTTTATTGTGTC-TTTAGCGATTGTGACCGCAC--AA----AGCTA 53
||||||| |||||||||| | ||| | |||||| ||| ||| ||||| || ||| |
Sbjct 1 ATGAAGTGTTTGTGTTTTGTCGTG-CTTTTAGCAATTCTGATCGCACAAAACTCTAGCGA 59
Query 54 TGTAGGAGTAGAAGCTGCGTCGAGTAATGGGTTCGTGAGCAGGAATGGCGTCCAATTTAT 113
| |||||||| || ||||||||||| |||| |||||||| || || |||||||| |||||
Sbjct 60 TCTAGGAGTAAAATCTGCGTCGAGTGATGGCTTCGTGAGTAGAAAAGGCGTCCAGTTTAT 119
Query 114 TCTCAATGGGAAACCATTTTACGCCAATGGCTTCAATGCCTACTGGCTAGCGTACGAAGC 173
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 120 TCTCAATGGGAAACCATTTTACGCTAATGGCTTCAATGCCTACTGGCTCGCGTACGAAGC 179
Query 174 CACCGATCCGGCCACAAGATTTAAGATCACTAATGTGTTTCAAAACGCAACTAGTCACGG 233
||||||| || ||||||| |||||||||||| ||||||||||||| ||||| | |||||
Sbjct 180 CACCGATTCGACCACAAGGTTTAAGATCACTTATGTGTTTCAAAATGCAACCATTCACGA 239
Query 234 TTTGACCATCGCCCGCACCTGGGGGTTCCGAGATGGCGCCTTATACCGCGCTCTCCAAAC 293
||||||||||| |||||| ||||||||||| ||||||| || | ||||||||||||||
Sbjct 240 TTTGACCATCGTCCGCACTTGGGGGTTCCGCGATGGCGGCT-A--CCGCGCTCTCCAAAT 296
Query 294 AGCCCCTGGT-TCCTACGATGAACACACTTTTCAGGTTTTGGATTTTGTGATAGCCGAAG 352
||||||||| || ||||||||| | |||||||||| ||||||||||| |||||| ||||
Sbjct 297 TGCCCCTGGTGTC-TACGATGAAAAAACTTTTCAGGGTTTGGATTTTGCGATAGCGGAAG 355
Query 353 CAAAAAGAGTCGGTATAAAATTGATAATCCCCCTTGTCAATAATTGGGATGACTACGGAG 412
|||||||| ||||||||||| |||||||| || |||||||||| | ||||| ||||
Sbjct 356 CAAAAAGACTCGGTATAAAAATGATAATCACCTTTGTCAATAACTATTCTGACTTTGGAG 415
Query 413 GGaaaaaaaCAATAC 427
||| ||| ||||||
Sbjct 416 GGAGGAAA-CAATAC 429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56375212035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5