BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478427
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10912.1 | Symbols: CPuORF63 | conserved peptide upstream op... 1352 0.0
AT3G10910.1 | Symbols: | RING/U-box superfamily protein | chr3... 1352 0.0
> AT3G10912.1 | Symbols: CPuORF63 | conserved peptide upstream
open reading frame 63 | chr3:3412911-3414019 REVERSE LENGTH=1109
Length=1109
Score = 1352 bits (732), Expect = 0.0
Identities = 942/1033 (91%), Gaps = 56/1033 (5%)
Strand=Plus/Plus
Query 1 AGAGTCGCCCATAAATTCATTTATGACTCTTTTTTATCACAATCTTGACATAAATATTTT 60
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 107 AGAGTCGCCCATAAATTCATTTATGACTC-CTTTTATCACAATCTTGCCATAAATATTTT 165
Query 61 TGCCTCC-CCTCATCTTTACACACAAGTCACGACTCACGAGACAGAAACAAATCAGaaaa 119
||||||| || ||||||||||||||||||||| | | || |||| |||||||| ||
Sbjct 166 TGCCTCCTCC-CATCTTTACACACAAGTCACG----A-G-GA-AGAAGCAAATCAG--AA 215
Query 120 aaaGATCAAAGCTCAGAAATGAAGAGTGCAGAGATTAATTAATTGAGAGTTTTTTAAGAA 179
|||||||||||||||||||| |||||| |||||||||||| ||| |||| ||||||||||
Sbjct 216 AAAGATCAAAGCTCAGAAATAAAGAGTACAGAGATTAATTCATTAAGAG-TTTTTAAGAA 274
Query 180 CATGAGGGTGAGGGATATCGATTCTCTCTTGTCCATCTCTTTTGTCATTCGATTTGACCA 239
| | |||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 275 C---A---TGAGGGATATCGATTCTCTCTTCTCCATCTCTTTTGTCATTCGATTTGTCCA 328
Query 240 AC-A-ACGA--CACGAATCTTGAAG-G-TGAAG---------T--TTCTCTCCTCTGCTT 282
|| | |||| | ||| ||||| | | ||| | |||||||||||||||
Sbjct 329 ACAAGACGAGTCTTGAA-GGTGAAGTGATCAAGCTTTTTTTTTCCTTCTCTCCTCTGCTT 387
Query 283 CTCAAGCGTACCTCAAAAGATGGGTCGGTTGCTACTTGAGCCACAAGCAAACGCACCCGC 342
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 388 CTCAAGCGTACCTCAAAAGATGGGTCGGTTGCTACTTGAGCCGCAAGCAAACGCACCCGC 447
Query 343 CGACGCAAACCCTAAACCCAAAGGAGGCATAAACGATACCTACTTCGACACTAACATGGT 402
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 448 CAACGCAAACCCTAAACCCAAAGGAGGCATAAACGACACCTACTTCGACACTAACATGGT 507
Query 403 CATCATTTTAGCTGCTTTACTCTGCGCTTTAATCTGTGCTCTAAGCCTCAACTCTGCCTT 462
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 TATCATTTTAGCTGCTTTACTCTGCGCTTTAATCTGTGCTCTAAGCCTCAACTCTGCCTT 567
Query 463 GCGATGTGTGCTACGCATAACTCGGAGATTCACTTCGGATGATCAAGTCGCAAACGCTTC 522
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 568 GCGATGTGTGCTACGCATAACTCGGAGATTCACTTCGGATGATCAAGTCTCAAACGCTTC 627
Query 523 AAACGCAAACGCAAATTCAAGACGTTTAGCGGCTACCACAGGG-CTCAAGAAACAGGCGT 581
||||||||||||||||| |||||||||||||| |||| ||| ||||||||||||||||
Sbjct 628 AAACGCAAACGCAAATTTGGGACGTTTAGCGGCTGCCAC-GGGTCTCAAGAAACAGGCGT 686
Query 582 TGAAACAAATCCCCGTGGGATTGTACGGATCAGGAATCATTGACATGAAAGCTACGGAGT 641
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 687 TGAAACAAATCCCCGTGGGACTGTACGGATCAGGAATCATAGACATGAAAGCTACGGAGT 746
Query 642 GTTTGATCTGTCTCGGAGATTTCGAAGACGGGGAAAAAGTTAGGGTTTTGCCTAAATGTA 701
||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 747 GTTTGATCTGTCTGGGAGATTTCGAAGATGGAGAAAAAGTTAGGGTTTTACCTAAATGTA 806
Query 702 ACCATGGCTTCCACGTGAGGTGCATCGATACTTGGTTGCTCTCACGTTCCTCTTGCCCCA 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 ACCATGGCTTCCACGTGAGGTGCATCGATACTTGGTTGCTCTCACGTTCCTCTTGCCCCA 866
Query 762 CTTGTAGACAATCGATACTCCTTGATGAGCAGCCGTCGCCGATGGCTGTTTCCCGGCGGG 821
|||||||||||||| |||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 867 CTTGTAGACAATCGCTACTCCTTGA-G--CAGCCTTCGCCGATGGCTGTTTCCCGGCGGG 923
Query 822 ACGAGGACATGGTAGTTTCCATCGTATAGGGACATGAT-GGTGATTTCTTAACTATGCTC 880
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 924 ACGAGGACATGGTAGTTTCCATCGTATAGGGACATGATCGGTGATTTCTTAATTATGCTC 983
Query 881 TCTCAAGTGGGCTTGGTTTTTGTTGGTTGGTTTCATAATTGtttttttGTGTGTGCAAAC 940
|||||||||||||||||||||||||||||| | | |||||| | ||||||||||||
Sbjct 984 TCTCAAGTGGGCTTGGTTTTTGTTGGTTGG----A-A-TTGTTTGT--GTGTGTGCAAAC 1035
Query 941 TAATGTGATT-ATTTACACATATTCTTGTTCTGGTGAATTTA----GTGTGATGGGTTTT 995
|||||||||| |||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1036 TAATGTGATTTATTTTCACATATTCTTGTTCTGATGAATTTAATTAGTGTGATGGGTTTT 1095
Query 996 CTTGAAATCAAGC 1008
|||||||||||||
Sbjct 1096 CTTGAAATCAAGC 1108
> AT3G10910.1 | Symbols: | RING/U-box superfamily protein | chr3:3412911-3414019
REVERSE LENGTH=1109
Length=1109
Score = 1352 bits (732), Expect = 0.0
Identities = 942/1033 (91%), Gaps = 56/1033 (5%)
Strand=Plus/Plus
Query 1 AGAGTCGCCCATAAATTCATTTATGACTCTTTTTTATCACAATCTTGACATAAATATTTT 60
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 107 AGAGTCGCCCATAAATTCATTTATGACTC-CTTTTATCACAATCTTGCCATAAATATTTT 165
Query 61 TGCCTCC-CCTCATCTTTACACACAAGTCACGACTCACGAGACAGAAACAAATCAGaaaa 119
||||||| || ||||||||||||||||||||| | | || |||| |||||||| ||
Sbjct 166 TGCCTCCTCC-CATCTTTACACACAAGTCACG----A-G-GA-AGAAGCAAATCAG--AA 215
Query 120 aaaGATCAAAGCTCAGAAATGAAGAGTGCAGAGATTAATTAATTGAGAGTTTTTTAAGAA 179
|||||||||||||||||||| |||||| |||||||||||| ||| |||| ||||||||||
Sbjct 216 AAAGATCAAAGCTCAGAAATAAAGAGTACAGAGATTAATTCATTAAGAG-TTTTTAAGAA 274
Query 180 CATGAGGGTGAGGGATATCGATTCTCTCTTGTCCATCTCTTTTGTCATTCGATTTGACCA 239
| | |||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 275 C---A---TGAGGGATATCGATTCTCTCTTCTCCATCTCTTTTGTCATTCGATTTGTCCA 328
Query 240 AC-A-ACGA--CACGAATCTTGAAG-G-TGAAG---------T--TTCTCTCCTCTGCTT 282
|| | |||| | ||| ||||| | | ||| | |||||||||||||||
Sbjct 329 ACAAGACGAGTCTTGAA-GGTGAAGTGATCAAGCTTTTTTTTTCCTTCTCTCCTCTGCTT 387
Query 283 CTCAAGCGTACCTCAAAAGATGGGTCGGTTGCTACTTGAGCCACAAGCAAACGCACCCGC 342
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 388 CTCAAGCGTACCTCAAAAGATGGGTCGGTTGCTACTTGAGCCGCAAGCAAACGCACCCGC 447
Query 343 CGACGCAAACCCTAAACCCAAAGGAGGCATAAACGATACCTACTTCGACACTAACATGGT 402
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 448 CAACGCAAACCCTAAACCCAAAGGAGGCATAAACGACACCTACTTCGACACTAACATGGT 507
Query 403 CATCATTTTAGCTGCTTTACTCTGCGCTTTAATCTGTGCTCTAAGCCTCAACTCTGCCTT 462
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 TATCATTTTAGCTGCTTTACTCTGCGCTTTAATCTGTGCTCTAAGCCTCAACTCTGCCTT 567
Query 463 GCGATGTGTGCTACGCATAACTCGGAGATTCACTTCGGATGATCAAGTCGCAAACGCTTC 522
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 568 GCGATGTGTGCTACGCATAACTCGGAGATTCACTTCGGATGATCAAGTCTCAAACGCTTC 627
Query 523 AAACGCAAACGCAAATTCAAGACGTTTAGCGGCTACCACAGGG-CTCAAGAAACAGGCGT 581
||||||||||||||||| |||||||||||||| |||| ||| ||||||||||||||||
Sbjct 628 AAACGCAAACGCAAATTTGGGACGTTTAGCGGCTGCCAC-GGGTCTCAAGAAACAGGCGT 686
Query 582 TGAAACAAATCCCCGTGGGATTGTACGGATCAGGAATCATTGACATGAAAGCTACGGAGT 641
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 687 TGAAACAAATCCCCGTGGGACTGTACGGATCAGGAATCATAGACATGAAAGCTACGGAGT 746
Query 642 GTTTGATCTGTCTCGGAGATTTCGAAGACGGGGAAAAAGTTAGGGTTTTGCCTAAATGTA 701
||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 747 GTTTGATCTGTCTGGGAGATTTCGAAGATGGAGAAAAAGTTAGGGTTTTACCTAAATGTA 806
Query 702 ACCATGGCTTCCACGTGAGGTGCATCGATACTTGGTTGCTCTCACGTTCCTCTTGCCCCA 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 ACCATGGCTTCCACGTGAGGTGCATCGATACTTGGTTGCTCTCACGTTCCTCTTGCCCCA 866
Query 762 CTTGTAGACAATCGATACTCCTTGATGAGCAGCCGTCGCCGATGGCTGTTTCCCGGCGGG 821
|||||||||||||| |||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 867 CTTGTAGACAATCGCTACTCCTTGA-G--CAGCCTTCGCCGATGGCTGTTTCCCGGCGGG 923
Query 822 ACGAGGACATGGTAGTTTCCATCGTATAGGGACATGAT-GGTGATTTCTTAACTATGCTC 880
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 924 ACGAGGACATGGTAGTTTCCATCGTATAGGGACATGATCGGTGATTTCTTAATTATGCTC 983
Query 881 TCTCAAGTGGGCTTGGTTTTTGTTGGTTGGTTTCATAATTGtttttttGTGTGTGCAAAC 940
|||||||||||||||||||||||||||||| | | |||||| | ||||||||||||
Sbjct 984 TCTCAAGTGGGCTTGGTTTTTGTTGGTTGG----A-A-TTGTTTGT--GTGTGTGCAAAC 1035
Query 941 TAATGTGATT-ATTTACACATATTCTTGTTCTGGTGAATTTA----GTGTGATGGGTTTT 995
|||||||||| |||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1036 TAATGTGATTTATTTTCACATATTCTTGTTCTGATGAATTTAATTAGTGTGATGGGTTTT 1095
Query 996 CTTGAAATCAAGC 1008
|||||||||||||
Sbjct 1096 CTTGAAATCAAGC 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49380166501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5