BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478434
Length=508
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10930.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 492 2e-138
> AT3G10930.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: 18 plant structures;
EXPRESSED DURING: 9 growth stages; Has 1 Blast hits to
1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:3420130-3420832 REVERSE LENGTH=703
Length=703
Score = 492 bits (266), Expect = 2e-138
Identities = 359/402 (89%), Gaps = 14/402 (3%)
Strand=Plus/Plus
Query 88 ATCTTAC-CCGGAGA-ATACCTCCTGTTTCTAAGTCGACGGCGGTGGGTTGCGGA-G-GA 143
||||| | ||||||| || |||||||||||||||||| ||| ||| ||||||||| | ||
Sbjct 167 ATCTT-CTCCGGAGAGATCCCTCCTGTTTCTAAGTCGGCGGTGGTTGGTTGCGGAGGCGA 225
Query 144 GCAGGAGACGAAGACGGAATACTCTTCTTTTGTTCCTGAAGTTGTCGCCGGAAAGTTCGG 203
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 226 GCAGGAGACCAAGACGGAATATTCTTCTTTTGTTCCTGAAGTTGTCGCCGGAAAGTTCGG 285
Query 204 CTCCTTGGTGTTGAATGCTCTTCCGAAAGGGAATCGTCCGGGGTCTGGGCCCAGCAAGAA 263
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 286 GTCCTTGGTGTTGAATGCTCTTCCGAAAGGGAGTCGTCCGGGGTCTGGACCCAGCAAGAA 345
Query 264 AACTAACGACGTCAAGACTTAGAACTGTTCTTTGTCGAGTTTTCTGTCCTAATTCTTACt 323
|||||||||||||||||||||| ||| |||||| | ||||||||||||||||||||||||
Sbjct 346 AACTAACGACGTCAAGACTTAGCACTATTCTTTCTAGAGTTTTCTGTCCTAATTCTTACT 405
Query 324 t-ttt-ttt----GTCCTTTAGAGATTCTTTGATTTTTCATTTTCATATAGAGATTCTTG 377
| ||| ||| || ||||||||||||||||||||||| |||||| ||||||||| |||
Sbjct 406 TCTTTCTTTTTTTGTTCTTTAGAGATTCTTTGATTTTTCGTTTTCAAATAGAGATTATTG 465
Query 378 TAAATGTTACATGTATTACAGAAAATTACTCTAGTAGTTTACGAAAAATTAGGATTTTAT 437
|||||||||||||||||||||||| |||| ||| |||||| ||||||| ||||||||||
Sbjct 466 TAAATGTTACATGTATTACAGAAATTTACAGTAGAAGTTTAGGAAAAATGAGGATTTTAT 525
Query 438 TTGGTCATTTTTAA-TCGAAATGATCAAAAATCAGATTATCA 478
||||| || | || ||||||||||||| | | ||| |||||
Sbjct 526 TTGGTAATGT--AAGTCGAAATGATCAAGACTTAGACTATCA 565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24263093001
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5