BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478437
Length=2170
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10960.1 | Symbols: ATAZG1, AZG1 | AZA-guanine resistant1 | ... 3277 0.0
> AT3G10960.1 | Symbols: ATAZG1, AZG1 | AZA-guanine resistant1
| chr3:3424813-3426997 REVERSE LENGTH=2185
Length=2185
Score = 3277 bits (1774), Expect = 0.0
Identities = 2035/2155 (94%), Gaps = 41/2155 (2%)
Strand=Plus/Plus
Query 29 AAGAATCGTGGACACATGGTTACATGTGAGATACTTGT-CTCTAAAGATCCCATTCCTCT 87
|||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 49 AAGAATCGTGGACACATGGTTACATGTGAGATACTTCTAC-CTAAAGATCCCATTCCTCT 107
Query 88 TAACCAGAATCTTTTCCTCTTTCTCTAATCATATCAAAAGCTCCCTTAACCA--TCTCTA 145
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 108 TAACCAGAATCTTTTCCTCTTTCTCTAATCATATCAAAAGCTCCCTTAACCATCTCTCTA 167
Query 146 TAGCTGCTtatatatatatataAGC-AAATCTGTTCTCTTCACTAGATTACAAAACCAGT 204
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 168 TAGCTGC--ATATATATATATAAGCAAAATCTGTTCTCTTCACTAGATTACAAAACCAGT 225
Query 205 AACCaaaaaaataaaaaaaaaCTTTGTATTTTTCTTTTACTTCTGTGATCTCTCTAAT-G 263
||||||||||| |||||| ||||| |||| | || |||||||||||||||||| |
Sbjct 226 CACCAAAAAAAT----AAAAAC-TTGTA-TTTT-TGTT--TTCTGTGATCTCTCTAATGG 276
Query 264 -G----AGCAACAACAACAGCTACCTTCTACTACTACTAGACCCAAGCCCAAGCTACTAA 318
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 277 AGCAACAGCAACAACAACAACTACCTTCTACTACTACTAGACCCAAGCCCAAGCTACTAA 336
Query 319 ACCGGCTCAACACCTATGTCGGTTCGAGCCGGGTTGGCAAACGGTTCAAACTCGCCGAAC 378
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 ACCGGCTCAATACCTACGTCGGTTCGAGCCGGGTTGGCAAACGGTTCAAACTCGCCGAAC 396
Query 379 GTAATTCTACTTTCACGACGGAGCTCCGTGCTGGTACGGCCACTTTCTTAACCATGGCTT 438
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 397 GTAATTCAACTTTCACGACGGAGCTCCGTGCTGGTACCGCCACTTTCTTAACCATGGCTT 456
Query 439 ATATCCTCGCCGTCAACGCTTCAATCCTCTCTGATTCCGGTGGAACTTGCTCTGTTTCCG 498
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 457 ATATCCTCGCCGTCAACGCTTCAATCCTTTCTGATTCCGGTGGTACTTGCTCTGTTTCCG 516
Query 499 ATTGTATCCCTCTCTGCTCAAACCCAACGATCCAACCTTCTCAGTGTACCGGACCGGGTC 558
||||||||||||| |||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 517 ATTGTATCCCTCTATGCTCAAACCCAGCGATCGAACCTTCGCAGTGTACCGGACCGGGTC 576
Query 559 TCCGATTGATCCAACCTGACGTTTCCTGTAAATTCAACCCGGTTAATCCCGGTTACGCCA 618
||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 577 TCCGATTAATCCAACCCGACGTTTCCTGTAAATTCAACCCGGTTAATCCTGGTTACGCCG 636
Query 619 CTTGCGTCGAAGGAATTCGAAAGGATCTAATCGTCGCCACCGTAGCTGCGTCACTAATCG 678
| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 CATGCGTTGAAGAAATTCGAAAGGATCTAATCGTCGCCACCGTAGCTGCGTCACTAATCG 696
Query 679 GTTGTGTAATCATGGGATTGATGGCGAATCTTCCTCTAGCTTTAGCTCCGGGAATGGGAA 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 GTTGTGTAATCATGGGATTGATGGCGAATCTTCCTCTAGCTTTAGCTCCGGGAATGGGAA 756
Query 739 CTAACGCTTATTTCGCTTACACAGTCGTCGGATTTCACGGATCCGGTTCAATCTCATACC 798
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 757 CTAACGCTTATTTCGCTTACACCGTCGTTGGATTTCACGGATCCGGTTCAATCTCATACC 816
Query 799 GAACCGCACTCGCCGCTGTTTTCATCGAAGGACTGATCTTTCTCTTCATCTCCGCCATAG 858
| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 817 GGACCGCACTCGCCGCCGTTTTCATCGAAGGACTGATATTTCTCTTCATCTCCGCCATAG 876
Query 859 GTTTCAGAGCAAAGCTCGCGAAACTCGTTCCTAAACCGGTCAGAATCAGTTCCTCCGCCG 918
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 GTTTCAGAGCAAAACTTGCGAAACTCGTTCCTAAACCGGTCAGAATCAGTTCCTCCGCCG 936
Query 919 GAATCGGACTTTTCCTCGCCTTCATCGGTTTACAGAACAATCAAGGAATCGGTTTAGTCG 978
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 937 GAATCGGACTTTTCCTCGCTTTCATCGGTTTACAGAACAATCAAGGAATCGGTTTAGTCG 996
Query 979 GTTATAGTCCTTCAACACTCGTCACCCTCGCCGCTTGTCCAACCTCATCACGAATATCAT 1038
||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| |
Sbjct 997 GTTATAGTCCTTCAACACTAGTCACTCTCGCCGCTTGTCCAGCCTCATCACGAATATCGT 1056
Query 1039 TAGCTCCCGTTATAACGTCAGCTAACGGAACCGTTAGTTTACTCGCCGGAGGATCAGTTT 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 TAGCTCCCGTTATAACGTCAGCTAACGGAACCGTTAGTTTACTCGCCGGAGGATCAGTTT 1116
Query 1099 CCGGCGATATTATGTGTCTTCACGGACGAATGGAGAGTCCAACGTTTTGGCTT-GGTATC 1157
||||||||||||||||| |||||||||||||||||||||||||||| ||| || ||||||
Sbjct 1117 CCGGCGATATTATGTGTATTCACGGACGAATGGAGAGTCCAACGTTCTGG-TTAGGTATC 1175
Query 1158 GTCGGATTCGTGATCATAGCTTATTGTTTGGTGAAGAACGTGAAAGGAGCGATGATCTAC 1217
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1176 GTCGGATTCGTGATCATAGCTTATTGTTTGGTAAAGAACGTGAAAGGAGCGATGATCTAC 1235
Query 1218 GGGATCGTCTTCGTAACGGCCGTTTCGTGGTTCCGTAACACAGAGGTAACGGCGTTTCCA 1277
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 GGGATCGTCTTCGTAACGGCCGTTTCGTGGTTCCGTAACACAGAGGTAACGGCGTTTCCG 1295
Query 1278 AACACATCGGCCGGTGACGCAGCTCATGATTATTTCAAAAAGATTGTTGATGTACACGTC 1337
|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1296 AACACATCGGCCGGAGATGCAGCTCATGATTATTTCAAAAAGATCGTTGATGTACACGTC 1355
Query 1338 ATCAAACACACCGCCGGAGCTTTAAGCTTCTCCGGGATAAACAAAGGACATTTCTGGGAA 1397
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 ATTAAACATACCGCCGGAGCTTTAAGCTTCTCCGGGATAAACAAAGGACATTTCTGGGAA 1415
Query 1398 GCTCTGGTGACATTCCTCTACGTTGATATTTTGGATACGACGGGAACGCTTTATTCCATG 1457
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1416 GCTCTGGTGACATTCCTCTACGTTGATATTTTGGATACGACGGGAACGCTTTACTCCATG 1475
Query 1458 GCTAGATTCGCCGGATTCGTCGACGAGAAAGGAGATTTCGCCGGACAGTATTTCGCGTTT 1517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 GCTAGATTCGCCGGATTCGTCGACGAGAAAGGAGATTTCGCCGGACAGTATTTCGCGTTT 1535
Query 1518 ATGTCCGACGCGTCTGCGATTGTGATCGGATCGTTGCTTGGTACATCTCCAGTGACGGTT 1577
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1536 ATGTCTGACGCGTCTGCGATTGTGATCGGATCGTTGCTTGGTACATCTCCGGTGACTGTT 1595
Query 1578 TTCATCGAATCGTCAACGGGGATACGTGAAGGAGGAAGGACGGGAT-TGACTGCGATTAC 1636
|||||||| ||||| ||||||||| | |||||||| |||||||| | | || ||||||||
Sbjct 1596 TTCATCGAGTCGTCGACGGGGATAAGAGAAGGAGGGAGGACGGG-TCTAACGGCGATTAC 1654
Query 1637 GGTGGCGGTTTATTTCTTCTTAGCGATGTTTTTCACGCCGTTGCTAGCTTCGATTCCGGC 1696
|||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1655 GGTGGCTGTTTATTTCTTGTTAGCGATGTTTTTCACACCGTTGCTAGCTTCGATTCCCGC 1714
Query 1697 TTGGGCGGTTGGTCCACCGTTGATATTAGTTGGAGTGATGATGATGAAATCAGTGACGGA 1756
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 1715 ATGGGCGGTTGGTCCGCCGTTGATATTAGTCGGAGTGATGATGATGAAATCAGTCACAGA 1774
Query 1757 GATCAATTGGGAAGATATGAGAGAGGCGATTCCGGCATTCGTGACAATGATTCTAATGCC 1816
||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1775 GATTGATTGGGAAGATATGAGAGAGGCGATTCCGGCATTTGTGACAATGATTCTGATGCC 1834
Query 1817 GTTGACGTACTCCGTCGCGTATGGATTGATCGGAGGGATTGGGAGCTACGTGGTGTTGCA 1876
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1835 GTTGACTTACTCCGTCGCGTATGGATTGATCGGAGGGATTGGGAGCTATGTAGTGTTGCA 1894
Query 1877 TCTATGGGATTGGGGagaagaaggattggtgaaattagggtttttgaaaaagaaagttga 1936
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
Sbjct 1895 TCTATGGGATTGGGGAGAAGAAGGTTTGGTGAAATTAGGGTTTTTGAAAAGGAAAGTT-A 1953
Query 1937 agaagaagaagaggaagaGGATAATAATGGAGTTGTCAAAGCTAGTGAGATTGATACTAC 1996
| | ||||| | | | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1954 A-A-GAAGA-G-G-AT-A--ATAATAATGGAGTTGTCAAAGCTAGTGAGATTGATACTAC 2005
Query 1997 CGtttagatatttttctttgatttgattttaaatttttgttactattgatttttttgatt 2056
||||||| | |||| |||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 2006 CGTTTAGGT-TTTT-CTTTGATTTGATTTTACATTTTTGTTACTATTGATTTTTTAGATT 2063
Query 2057 tctttCCTAGGAAGAAAGGACAAGTGATTGCATTATTGATTTGTTGCTCCTGTAGATTTT 2116
|||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2064 TCTTTCTTAGGATGAAAGGACAAGTGATTGCATTATTGATTTGTTGCTCTTGTAGATTTT 2123
Query 2117 TTGAA-ACGGAAAAGTGTAAAAATGTTGGGGAGAAAATAAAGAAAACTGTAGAAA 2170
||||| | | |||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 2124 TTGAAGA-G-AAAAGTGTAAAAATGTTGGGGA-AAAATAAAGAAAACTGTTGAAA 2175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107629968480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5