BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478442
Length=2050
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10980.1 | Symbols: | PLAC8 family protein | chr3:3438278-3... 3005 0.0
AT5G05350.1 | Symbols: | PLAC8 family protein | chr5:1585297-1... 593 2e-168
> AT3G10980.1 | Symbols: | PLAC8 family protein | chr3:3438278-3440809
FORWARD LENGTH=2532
Length=2532
Score = 3005 bits (1627), Expect = 0.0
Identities = 1863/1973 (94%), Gaps = 32/1973 (2%)
Strand=Plus/Plus
Query 95 AATTTTAAAAATT-CGATTCAACGAGTTTTC-CTGTTAAGGGTTTGATTCCTTTTC-TGT 151
|||||| ||||| |||||||||||| |||| | |||||||||||||||||||| | |
Sbjct 267 AATTTT-TAAATTCCGATTCAACGAG-TTTCTCAACTAAGGGTTTGATTCCTTTTCTTTT 324
Query 152 TCATCTTTGTTTAGTCAAATCTGAAGACTTGTTTGGTTTGGTTCCAATGTGCT-----G- 205
||||||||||||| ||||||||||| || ||| ||| |||| ||||||||| |
Sbjct 325 TCATCTTTGTTTATTCAAATCTGAATAC---TTT-GTTAGGTTTCAATGTGCTGAGAAGT 380
Query 206 AGAAGAAGCTTCGTTGGCAAAAGT-CGAATCTTTTCTTCttttttttttCTGGGTTTTTA 264
|||||||||||||||||| |||| |||||||||||||| || ||||||||||| |||||
Sbjct 381 AGAAGAAGCTTCGTTGGC--AAGTCCGAATCTTTTCTTC-TTCTTTTTTCTGGG-TTTTA 436
Query 265 TATTCTTTGCCAACAATGTTTAAGCTTGCTAAGCATATATGCCTTTGAGTAGCTGCTGCT 324
||||||||||||||||||||||||||||| |||||||||| |||||||||||||| | |
Sbjct 437 TATTCTTTGCCAACAATGTTTAAGCTTGCAAAGCATATATTCCTTTGAGTAGCTG-T--T 493
Query 325 TTATTCCTAC-AAGATTTGATCTT---TA-AGAGAGAGAATGGGATCGAATTGTGATGGG 379
|||||||||| ||||||||||||| || ||||||| ||||||||| ||||||||||||
Sbjct 494 TTATTCCTACAAAGATTTGATCTTCAATAGAGAGAGATAATGGGATCTAATTGTGATGGG 553
Query 380 AATTTGAAAGCAGAGATTGAAGAATCTAATGGTTCTTCTGGCaaaaaaaCTAGGGTTCCT 439
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 554 AATTTGAAAGCAGAGATTGAAGAATCTAATGGTTCTTCTGGCAAAAATACTAAGGTTCCT 613
Query 440 CCTTGTCCTCTTGATGTTTCTACATCTAGAAGAACTTTGATTGGTGATGGTAAACCTAGG 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 CCTTGTCCTCTTGATGTTTCTACATCTAGAAGAACTTTGATTGGTGATGGTAAACCTAGG 673
Query 500 AGATGGTCTATTAGTGCTTTGCCTGATGCTTCTAGTAGAATCCAGCTTCTGAAATTTGGT 559
|||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||
Sbjct 674 AGATGGTCTATTAGTGCTTTACCTGATGCTTCTAGTAGATTCCAGCTTCTCAAATTTGGT 733
Query 560 TCTCCTTCTGCTAAATTCAAGAAAATGGCTGAGGATAGAGACGAGGTTTCGCGGTCAGTG 619
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 734 TCTCCTTCTGCTAAGTTCAAGAAAATGGCTGAGGATAGAGACGAGGTTTCACGGTCAGTG 793
Query 620 AAGAGCTCAAGTAGCGGCAGCAGTCATAATTTCAGGGAAAGAATCAGTGGTGTGCTTCAC 679
| |||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 794 ACTAGCTCAAGTAACGGAAGCAGTCATAATTTCAGGGAAAGAATCAGTGGCGTGCTTCAC 853
Query 680 CGGAATATCGATTGGAGTTCTCTGATGAAAATGGGGAAAGAATGGATTAGGAATCCTATT 739
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 854 CGGAAAATAGATTGGAGTTCTCTGATGAATATGGGGAAAGAATGGATTAGGAATCCTATT 913
Query 740 AACATGGCTCTCTTTGTGTGGATACTTGTTGTTGCAGTCTCTGGTGCTATTCTCTTCATG 799
||||||||| | || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 AACATGGCTTTATTCGTTTGGATACTTGTTGTTGCAGTCTCTGGTGCTATTCTCTTCATG 973
Query 800 GTTATGACTGGTATGTTGAATCATGCTTTGCCTAAGAAGTCACAGAGAGATGCTTGGTTT 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 GTTATGACTGGTATGTTGAATCATGCTTTGCCTAAGAAGTCACAGAGAGATGCTTGGTTT 1033
Query 860 GAAGTTAACAATCAGATCCTTAATGGGTTGTTTACTTTGATGTGTCTTTATCAACATCCG 919
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1034 GAAGTTAACAATCAGATTCTTAATGGCTTGTTTACTTTGATGTGTCTTTATCAACATCCC 1093
Query 920 AAACGGTTTTATCACTTGGTGCTTCTTTGTAGATGGAAGCAGGATGATATTACAAAGCTT 979
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1094 AAACGGTTTTATCACTTAGTGCTTCTTTGTAGATGGAAGCATGATGATATTACTAAGCTT 1153
Query 980 AGGAAAGCTTATTGCAAGGACGGGACTTATAAGCCGAATGAATGGATGCACATTATGGTT 1039
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1154 AGGAAAGCTTATTGCAAGGATGGGACTTATAAGCCTAATGAATGGATGCACATTATGGTT 1213
Query 1040 GTTGTCTTTTTGCTTCACTTGAACTGTTTTGCTCAGTACGCGCTTTGTGGTCTTAATGTT 1099
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1214 GTTGTCATTTTGCTTCACTTGAATTGTTTTGCTCAGTACGCGCTTTGTGGTCTTAATGTT 1273
Query 1100 GGATACAGGAGATCAGAGAGACCTCCCATCGGAGTCGCTATATGTATCTCTGCTGCGATT 1159
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 1274 GGATACAGGAGATCAGAGAGACCTCCCATTGGAGTTGCTATATGTATCTCTGCTGCCATT 1333
Query 1160 GGAGCTCCTGCGGTTGCGGGTTTGTACACTATACTAAGTCCACTTGGGAAAGATTATGAT 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1334 GGAGCTCCTGCGGTTGCGGGTTTGTACACTATACTAAGTCCACTTGGGAAAGATTATAAT 1393
Query 1220 GATTCAAATGAAGACGAGGAGAATCAACTGCAGCAACGTGAAGAAGGGTCTGTGAATCGC 1279
||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1394 GATTCTAATGAAGACGAGGAGAATCAACTGAAGCAACGTGAAGAAGGGTCTGTTAATCGT 1453
Query 1280 CGGTTTACTTTAGAGAGGAGGTATTCGTTTGCTTCTGCTTCCACGGGGGTTGGGGATGGA 1339
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1454 CGGTTTACTTTAGAGAGGAGGTATTCGTTTGCCTCTGCTTCCACGGGGGTTGGGGATGGG 1513
Query 1340 ATGGTTCCGGTGAGTGATCCTCAATGGAGTGGTGGAATTTTGGATATTTGGGATGATATT 1399
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1514 ATGGTTCCGGTGAGTGATCCTCAGTGGAGTGGTGGAATTTTGGATATTTGGGATGATATT 1573
Query 1400 TCATTGGCTTATCTTTCTCTTTTCTGCACGTTCTGTGTCTTTGGATGGAATATGGAGAGA 1459
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1574 TCATTGGCTTATCTTTCTCTTTTCTGCACTTTCTGTGTCTTTGGATGGAACATGGAGAGA 1633
Query 1460 GTTGGGTTCGGGAATATGTATGTTCACATAGCGACGTTTATTCTCTTTTGTTTGGCACCT 1519
|||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1634 GTTGGGTTTGGGAACATGTATGTTCACATAGCTACGTTTATTCTCTTCTGTTTGGCACCT 1693
Query 1520 TTCTTTATATTCAACTTAGCTGCGGTTAATATCGATAATGAGACGGTTAGGGAGGCCCTT 1579
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1694 TTCTTTATATTCAACTTAGCTGCGGTTAATATCGATAATGAGACGGTCAGGGAGGCG-TT 1752
Query 1580 -GGGATATCTGGAATCCTTCTTTGTTTGTTTGGTTTGCTCTATGGTGGATTCTGGAGAAT 1638
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1753 AGGGATATCTGGAATCCTTCTTTGTGTGTTTGGTTTGCTCTATGGTGGATTCTGGAGAAT 1812
Query 1639 TCAGATGAGGAAAAGATTCAAATTGCCGAGTTATAAGTTCTGCTTCGGTAGAGCCGCGAT 1698
|||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 1813 TCAGATGAGGAAAAGATTCAAATTACCGAGTTATAATTTCTGTTTCGGTAGAGCCGCGAT 1872
Query 1699 TGCTGATTGTGCGCTCTGGTTATGTTGTTGCTGGTGCTCTTTAGCACAAGAAGTTAGGAC 1758
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1873 TGCTGATTGTGCGCTCTGGTTATGTTGTTGTTGGTGCTCTTTAGCACAAGAAGTTAGGAC 1932
Query 1759 TGCAAACGCTTATGAGATAGTGGAAGACAAATTCTGCCAAAGAAAAGAAGAGAAGAATTT 1818
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1933 TGCAAACTCTTATGAGATAGTGGAAGACAAATTCTGCCAAAGAAAAGAAGAGAAGAATAT 1992
Query 1819 GGCATCTCCGAATTTGGTATCTCCTATGCCTCGTGAGGACGGTGTCTTTGATCCTCGGTT 1878
|| |||||||||||||||||| ||| |||||||||| |||||||| ||||||||||||||
Sbjct 1993 GGTATCTCCGAATTTGGTATCACCTTTGCCTCGTGAAGACGGTGTGTTTGATCCTCGGTT 2052
Query 1879 TGGTCTCGGGAGCTCCCCTAAGAACATAAGTGGAGCTAGTTCTCCTAGCCCGAGCAGGTT 1938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2053 TGGTCTCGGGAGCTCCCCTAAGAACATAAGTGGAGCTAGTTCTCCTAGCCCGAGCAGGTT 2112
Query 1939 TTGGAAAGAGGTACATAGTCCAAATATACAGACACCTAGAGAGAAAGAAGAAGGT-AAAA 1997
||||||||||| |||||| |||||| ||||||||||||||||||||||||| ||| ||||
Sbjct 2113 TTGGAAAGAGGCACATAGCCCAAATGTACAGACACCTAGAGAGAAAGAAGA-GGTTAAAA 2171
Query 1998 GCGAGGTTGCTCTGACTCCACCTTCTCCTCTGTCTATACACCGAGAAGCTTGA 2050
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2172 GCGATGTTGCTCTGACTCCACCTTCTCCTCTGTCTATACACCGAGAAGCTTGA 2224
> AT5G05350.1 | Symbols: | PLAC8 family protein | chr5:1585297-1587517
FORWARD LENGTH=2221
Length=2221
Score = 593 bits (321), Expect = 2e-168
Identities = 724/909 (80%), Gaps = 66/909 (7%)
Strand=Plus/Plus
Query 428 ACTAGGGTTCCTCCTTGTCCTCTTGATGTTTCTACATCT-AGAAGAACTT-TGATTGGTG 485
||||||||| | | ||||||| || | | || |||||| | ||| | || | || |||
Sbjct 494 ACTAGGGTT--T-CATGTCCTCCTGCTCTCTCAACATCTCATAAG-A-TTCTCATCAGTG 548
Query 486 ATG-GTAAACCTAGGAGATGGT-CTATTAGTGCTTTGCCTGATGCT-TCTAGTAGAATCC 542
| | | |||||||||||||||| | | ||| | |||||||||| | |||| ||| ||
Sbjct 549 AAGAG-AAACCTAGGAGATGGTCCGA-GAGTTCGTTGCCTGATG-TCTCTAATAGGATTA 605
Query 543 AGCTTCTGAAATTTGGTTCTCCTTCTGCTAAATTCAAGAAAATGGCTGAGGATAGAGACG 602
||||| ||||||||||||| |||||||||| | |||||| |||||||||||| ||||| |
Sbjct 606 AGCTTTTGAAATTTGGTTCCCCTTCTGCTAGACTCAAGAGAATGGCTGAGGAAAGAGATG 665
Query 603 AGGTTTCGCGGTCAGTGAAGAGCTCAAGTAGCGGCAGCAGTCATAATTTCAGGGAAAGAA 662
| ||||| || || || || ||||| | ||| || | | || | | | |
Sbjct 666 AAGTTTCACGCTCTGTCAACAGCTC----A-----AGC--TC-T-A--GCA-GCCACG-A 708
Query 663 TCAGTGGTGTGCTTCACCGGAATATCGATTGGAG-TTCTCTGATGAAAATGGGGAAAG-A 720
| ||||||| |||| |||||| ||||| ||| | || | |||||||||| ||| ||| |
Sbjct 709 T--GTGGTGT-CTTC-CCGGAAAATCGAGTGG-GCTTGTTTGATGAAAAT-GGGTAAGCA 762
Query 721 ATGGATTA-GGAATCCTATT-AACATGGCTCTCTTTGTGTGGATAC-TTGTTGTTGCAGT 777
|||| || ||| || || ||||||| | | ||| ||||||| | |||| ||||| ||
Sbjct 763 ATGG-CTACAGAA-CCCGTTGAACATGGTTATGTTTTTGTGGAT-CTTTGTGGTTGCTGT 819
Query 778 CTCTGGTGCTATTCTCTTCATGGTTATGACTGGTATGTTGAATCATGCTTTGCCTAAGAA 837
||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 820 CTCCGGTGCGATTCTATTCATGGTTATGACTGGTATGTTGAACCATGCTTTGCCCAAGAA 879
Query 838 GTCACAGAGAGATG-CTTGGTTTGAAGTTAACAATCAGATCCTTAATGGGTTGTTTACTT 896
||||||||||||| || |||||||||||||||| || ||||| || | |||||||||
Sbjct 880 ATCACAGAGAGATGTCT-GGTTTGAAGTTAACAACCAAATCCTCAACGCATTGTTTACTC 938
Query 897 TGATGTGTCTTTATCAACATCCGAAACGGTTTTATCAC-TTGGTGCTTCTTTGTAGATGG 955
|||||||||| |||||||| |||||||||||||| ||| ||| ||||||| |||||||||
Sbjct 939 TGATGTGTCTGTATCAACACCCGAAACGGTTTTACCACCTTG-TGCTTCTCTGTAGATGG 997
Query 956 AAGCAGGATGATATTACAAAGCTTAGGAA-AGCTTATTGCAAGGACGGGACTTATAAGCC 1014
||||| || ||| |||||| ||||||||| | || | ||||| |||||||||| |||||
Sbjct 998 AAGCAAGACGATGTTACAACGCTTAGGAAGATATTCT-GCAAGAACGGGACTTACAAGCC 1056
Query 1015 GAATGAATGGATGCACATTATGGTTGTTGT-CTTTTTGCTTCACTTGAACTGTTTTGCTC 1073
|| |||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1057 AAACGAATGGATACACATGATGGTTGTTGTTCTTTT-GCTTCACTTGAACTGTTTTGCTC 1115
Query 1074 AGTACGCGCTTTGTGGTCTTAATGTT-GGATACAGGAGATCAGAGAGACCTCCCATCGGA 1132
|||| |||||||| |||||||| || || || || ||||| ||||||||| |||| ||
Sbjct 1116 AGTATGCGCTTTGCGGTCTTAAC-TTAGGCTATAGAAGATCCGAGAGACCTGCCATTGGT 1174
Query 1133 GTCGCTATATGTATCTCTGCTGCGATTGGAGCTCCTGCGGTTGCGGGTTTGTACACTATA 1192
|| ||||||||||| ||| ||| || | ||||||| ||| ||||||||||||||||||
Sbjct 1175 GTAGCTATATGTATATCTTTTGCAATAGCAGCTCCTACGGCTGCGGGTTTGTACACTATT 1234
Query 1193 CTAAGTCCACTTGGGAAAGATTATGATGATTCAAATGAAGACGAGGAGAATCAACTGCAG 1252
|| |||||||||||||||||||||||| | ||| || || |||||||||||| |||||
Sbjct 1235 CTTAGTCCACTTGGGAAAGATTATGATCCT-CAAG-GA-GATGAGGAGAATCAAGTGCAG 1291
Query 1253 -CAACGTGAAGAAGGGTCTGT--G-AATCGCCGGTT-TACT-TTAGAGAGGAGGTATTCG 1306
| | || ||||| | || | |||||| ||| | || || || ||||| |||||
Sbjct 1292 GCTGTGGGA-GAAGGACCGGTTAGTAATCGCAAGTTAT-CTCTT-GAAAGGAGATATTCA 1348
Query 1307 TTTGCTTCT 1315
|||||||||
Sbjct 1349 TTTGCTTCT 1357
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101605903080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5