BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478443
Length=363
Score E
Sequences producing significant alignments: (Bits) Value
AT2G24940.1 | Symbols: AtMAPR2, MAPR2 | membrane-associated pro... 281 2e-75
AT2G24945.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 281 2e-75
AT4G36925.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 276 1e-73
AT3G26800.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 276 1e-73
> AT2G24940.1 | Symbols: AtMAPR2, MAPR2 | membrane-associated progesterone
binding protein 2 | chr2:10609394-10612232 FORWARD
LENGTH=2839
Length=2839
Score = 281 bits (152), Expect = 2e-75
Identities = 168/176 (95%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 128 CGTTGGTAGCAGAAGATATTGTAGCGAAGACTGCCTTATCATTGAAGAACGCCCTCTTGT 187
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2529 CGTTGGTAGCAGAAGATATTGTAGCGAAGACTGCCTTATCATTGAATAACGCCCTCTTGT 2588
Query 188 TGTCGTGGAATGAAGACTCTTTGATTTTGCAATTGTTCTTGGACTCCCAGTTCATTGTAA 247
|| |||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||
Sbjct 2589 TGGCGTGGAATGAAGACTCTTTGGTTTTGCAATTGTTCATGGACTCCCAGTTCAGTGTAA 2648
Query 248 TACCTTTCAAGTCACTCGAAGTCACCGTTGAGCTAGGGAGAATTCTGCTTGTTTTA 303
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2649 AATCTTTCAAGTTACTCGAAGTCACCGTTGAGCTAGGGAGAATTCTGCTTGTTTTA 2704
Score = 172 bits (93), Expect = 2e-42
Identities = 103/108 (95%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 4 ATCTATGTTCTATCAAATTCCCCTGTTGGTGGGAAATCTTTATTTGCAGGGAATGAAAGC 63
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2357 ATCTATGTTCTATCAAGTTCCCCTGTTGTTGGGAAATCTTTATTTGCAGGGAATGAAAGC 2416
Query 64 TTCTTTGGTGTTTGTGGACTCGCTGTCGCATCTTGTTTGGACATGCTA 111
|||||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct 2417 TTCTTTGGTGTTTGTGGATTTGCTGTTGCATCTTGTTTGGACATGCTA 2464
> AT2G24945.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G36925.1);
Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr2:10609413-10612232
FORWARD LENGTH=2820
Length=2820
Score = 281 bits (152), Expect = 2e-75
Identities = 168/176 (95%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 128 CGTTGGTAGCAGAAGATATTGTAGCGAAGACTGCCTTATCATTGAAGAACGCCCTCTTGT 187
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2510 CGTTGGTAGCAGAAGATATTGTAGCGAAGACTGCCTTATCATTGAATAACGCCCTCTTGT 2569
Query 188 TGTCGTGGAATGAAGACTCTTTGATTTTGCAATTGTTCTTGGACTCCCAGTTCATTGTAA 247
|| |||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||
Sbjct 2570 TGGCGTGGAATGAAGACTCTTTGGTTTTGCAATTGTTCATGGACTCCCAGTTCAGTGTAA 2629
Query 248 TACCTTTCAAGTCACTCGAAGTCACCGTTGAGCTAGGGAGAATTCTGCTTGTTTTA 303
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2630 AATCTTTCAAGTTACTCGAAGTCACCGTTGAGCTAGGGAGAATTCTGCTTGTTTTA 2685
Score = 172 bits (93), Expect = 2e-42
Identities = 103/108 (95%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 4 ATCTATGTTCTATCAAATTCCCCTGTTGGTGGGAAATCTTTATTTGCAGGGAATGAAAGC 63
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2338 ATCTATGTTCTATCAAGTTCCCCTGTTGTTGGGAAATCTTTATTTGCAGGGAATGAAAGC 2397
Query 64 TTCTTTGGTGTTTGTGGACTCGCTGTCGCATCTTGTTTGGACATGCTA 111
|||||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct 2398 TTCTTTGGTGTTTGTGGATTTGCTGTTGCATCTTGTTTGGACATGCTA 2445
> AT4G36925.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G24945.1);
Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr4:17403980-17404450
FORWARD LENGTH=471
Length=471
Score = 276 bits (149), Expect = 1e-73
Identities = 167/176 (95%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 128 CGTTGGTAGCAGAAGATATTGTAGCGAAGACTGCCTTATCATTGAAGAACGCCCTCTTGT 187
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 179 CGTTGGTAGCAGAAGATATTGTAGCGAAGACTGCCTTATCATTGAATAACGCCCTCTTGT 238
Query 188 TGTCGTGGAATGAAGACTCTTTGATTTTGCAATTGTTCTTGGACTCCCAGTTCATTGTAA 247
|| ||||||| |||||||||||| |||||||||||||| ||||||||||||||| |||||
Sbjct 239 TGGCGTGGAACGAAGACTCTTTGGTTTTGCAATTGTTCATGGACTCCCAGTTCAGTGTAA 298
Query 248 TACCTTTCAAGTCACTCGAAGTCACCGTTGAGCTAGGGAGAATTCTGCTTGTTTTA 303
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 299 AATCTTTCAAGTCACTCGAAGTCACCGTTGAGCTAGGAAGAATTCTGCTTGTTTTA 354
Score = 167 bits (90), Expect = 7e-41
Identities = 102/108 (94%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 4 ATCTATGTTCTATCAAATTCCCCTGTTGGTGGGAAATCTTTATTTGCAGGGAATGAAAGC 63
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 7 ATCTATGTTCTATCAAGTTCCCCTGTTGTTGGGAAATCTTTATTTGCAGGGAATGAAAGC 66
Query 64 TTCTTTGGTGTTTGTGGACTCGCTGTCGCATCTTGTTTGGACATGCTA 111
||||||||||||| |||| | ||||| |||||||||||||||||||||
Sbjct 67 TTCTTTGGTGTTTATGGATTTGCTGTTGCATCTTGTTTGGACATGCTA 114
> AT3G26800.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G36925.1);
Has 9 Blast hits to 9 proteins in 3 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr3:9862173-9862778
FORWARD LENGTH=606
Length=606
Score = 276 bits (149), Expect = 1e-73
Identities = 168/177 (95%), Gaps = 2/177 (1%)
Strand=Plus/Plus
Query 128 CGTTGGTAGCAGAAGATATTGTAGCGAAGACTGCCTTATCATTGAAGAACGCCCTCTTGT 187
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 314 CGTTGGTAGCAGAAGATATTGTAGCGAAGACTGCCTTATCGTTGAAGAACGCCCTCTTGT 373
Query 188 TG-TCGTGGAATGAAGACTCTTTGATTTTGCAATTGTTCTTGGACTCCCAGTTCATTGTA 246
|| | ||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||
Sbjct 374 TGGT-GTGGAATGAAGACTCTTTGGTTTTGCAATTGTTCTTGGATTCCCAGTTCAGTGTA 432
Query 247 ATACCTTTCAAGTCACTCGAAGTCACCGTTGAGCTAGGGAGAATTCTGCTTGTTTTA 303
| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 433 AAATCTTTCAAGTCACTCGAAGTCACCGTTGAGCTAGGGAGATTTCTGCTTGTTTTA 489
Score = 171 bits (92), Expect = 6e-42
Identities = 102/107 (95%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 4 ATCTATGTTCTATCAAATTCCCCTGTTGGTGGGAAATCTTTATTTGCAGGGAATGAAAGC 63
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||
Sbjct 142 ATCTATGTTCTATCAAATCCCCCTGTTGGTGGAAAATCTTTATTTGCAGGGAATGAGAGC 201
Query 64 TTCTTTGGTGTTTGTGGACTCGCTGTCGCATCTTGTTTGGACATGCT 110
|||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 202 TTCTTTGGTGTTTGTGGACTCGCTGTTACATCTTGTTTGGACATGCT 248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17040766911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5