BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478445

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G10990.1 | Symbols:  | F-box associated ubiquitination effec...   340    6e-93


> AT3G10990.1 | Symbols:  | F-box associated ubiquitination effector 
family protein | chr3:3446462-3446995 REVERSE LENGTH=534
Length=534

 Score =  340 bits (184),  Expect = 6e-93
 Identities = 241/267 (90%), Gaps = 9/267 (3%)
 Strand=Plus/Plus

Query  233  AAGATTTCGAGTTGCGGGTCCTAGAAGACGCTGGAAAACATGAATGGTC-AACACATGTA  291
            ||| ||||||||||||||||||||||||||||| ||||||||| ||||| ||  ||||||
Sbjct  267  AAG-TTTCGAGTTGCGGGTCCTAGAAGACGCTGAAAAACATGATTGGTCGAA-GCATGTA  324

Query  292  TACATGTTGCCTCCTTTGTGGAAGAATCTAGTTGGAGAAGAGACCAACCTACGGTTTCTT  351
            ||||||||||||||| ||||||||||| ||||||||||||||||||| |||||  |||||
Sbjct  325  TACATGTTGCCTCCTCTGTGGAAGAATGTAGTTGGAGAAGAGACCAAGCTACGACTTCTT  384

Query  352  GG-A---TTGAAAG--GCACCAATGAAATTGTGTTGTCGTGCAAGTACCCATCTACATTT  405
            || |   |||  ||  ||||||||||||||||||| |||| |||||||||||||||||||
Sbjct  385  GGAATGGTTGGCAGTTGCACCAATGAAATTGTGTTTTCGTACAAGTACCCATCTACATTT  444

Query  406  ATGCCTTCCTACGTCTTCTACTACAACATCGAGAGAAACACGATCAGAAGACTTCAAATC  465
            |||||||||||||||||||||||||| |||||||| |||||||||| ||||||| |||||
Sbjct  445  ATGCCTTCCTACGTCTTCTACTACAATATCGAGAGGAACACGATCATAAGACTTGAAATC  504

Query  466  CAAGGAATGGAAGAGTTTAACGGTAAG  492
            ||||||||||||||| |||||||||||
Sbjct  505  CAAGGAATGGAAGAGCTTAACGGTAAG  531


 Score =  326 bits (176),  Expect = 2e-88
 Identities = 216/236 (92%), Gaps = 0/236 (0%)
 Strand=Plus/Plus

Query  1    ATGATTCAATGCTGCAAACCCCATGTTCCTCATGGTAGTGAAATATGCATCAACGGTGTT  60
            |||||| |||| ||||||||||||||||||| ||||| |||||||||||| ||| |||||
Sbjct  1    ATGATTGAATGTTGCAAACCCCATGTTCCTCGTGGTACTGAAATATGCATTAACAGTGTT  60

Query  61   TTGTATTATACTGCGGTCGAAAAAGAGTCTTTAATGGTAACTACGGTAGTTTGCTTTGAT  120
            |||||||||||||| |||||||||| |||||||||||| ||||  ||||||||||| |||
Sbjct  61   TTGTATTATACTGCCGTCGAAAAAGGGTCTTTAATGGTTACTATAGTAGTTTGCTTCGAT  120

Query  121  ATTAGCTCTGAAAAGTTCAGCTTTATGAAAGTCACGGAAACTTTCAATAGAGATCTGCCT  180
            |||||||| || |||||||||||||||||||||| |||||||||| |||||||| |||||
Sbjct  121  ATTAGCTCGGAGAAGTTCAGCTTTATGAAAGTCATGGAAACTTTCGATAGAGATTTGCCT  180

Query  181  AGGTCAACAACTATGATAAACTACAATGGCAAATTAGGTTTGTTGATGGCTGAAGA  236
            || ||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct  181  AGTTCAACAACTATGATAAACTACAATGGCAAATTAGGTTTGTTGATGACGGAAGA  236



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26322693028


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5