BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478446
Length=1923
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11000.2 | Symbols: | DCD (Development and Cell Death) doma... 2379 0.0
AT1G78478.1 | Symbols: MIR833A | MIR833a; miRNA | chr1:29525194... 65.8 2e-09
> AT3G11000.2 | Symbols: | DCD (Development and Cell Death) domain
protein | chr3:3447568-3450589 FORWARD LENGTH=2409
Length=2409
Score = 2379 bits (1288), Expect = 0.0
Identities = 1451/1531 (95%), Gaps = 5/1531 (0%)
Strand=Plus/Plus
Query 329 GAAATATGTGTGTGAGAAATCTGAAGAAGGGAGATCTTTGTGGGGTTATATTTGGATGCA 388
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 GAAATATGTGTGTGAGGAATCTGAAGAAGGGAGATCTTTGTGGGGTTATATTTGGATGCA 691
Query 389 AGTTCAGCACTATCAAAGAGTGCTATGCTAAGAATTTGTTTGGTTTACCAGCCCCACACA 448
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 692 AGTTCAGCACTATCAAAGAGTGCTATGCTAAGAATTTGTTTGGCTTACCAGCCCCGCACA 751
Query 449 TGGCTTATATCAAGAACATTGATCCCGGCTTGACGCTGTTCCTATTCAACTACAGTGACA 508
||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 752 TGGCTTATATCAAGAACATTGATCCTGGTTTGACGCTGTTCCTGTTCAACTACAGTGACA 811
Query 509 GAACACTTCACGGCATATTTGAAGCTGCTAGTGAAGGAAAACTGAACATTGATTCCAAAG 568
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 GAACACTTCACGGCATCTTTGAAGCTGCTAGTGAAGGAAAACTGAACATTGATTCCAAAG 871
Query 569 CTTGGTCTCCAAATGGGACAGATCCAACTCCATATCCTGCTCAGGTAAAGGTACGAGTCC 628
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 872 CTTGGTCTCCAAATGGGACAGATCCAAGTCCATATCCTGCTCAGGTAAAGGTACGAGTCC 931
Query 629 GAGTGCGGTGTGAGCCCTTACCTGAAGAAAAGTTCAGCCCCGTAATT-TCTGAGAATTAC 687
||||||||||||||||||| |||||||||||||||||||| |||||| | ||||||||||
Sbjct 932 GAGTGCGGTGTGAGCCCTTGCCTGAAGAAAAGTTCAGCCCAGTAATTGT-TGAGAATTAC 990
Query 688 AAGGACGAAAAGATGTTTTGGTTTGAACTAGACCGAGGTCAGACAAACAAGCTGCTCCGT 747
|| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 991 AATGACGACAAGATGTTTTGGTTTGAACTAGATCGAGGTCAGACAAACAAGCTGCTCCGT 1050
Query 748 TTGTTTAAACCATCACCATCTGTAAGGGCACCACCATCGATATCAAGAGATGCTGTACCA 807
|||||||||||||| |||||||| | || |||||| ||||||| |||||||||||||||
Sbjct 1051 TTGTTTAAACCATCCCCATCTGTTA-GG--CCACCAACGATATCCAGAGATGCTGTACCA 1107
Query 808 CCACCCAGAAAGCCTATTCCGACATCTTCTCTTGCACAGATAGGTGACTTGGGAGCAACA 867
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1108 CCACCCAGAAAGCCTATTCCGGCATCTTCTCTTGCACAGATAGGTGACTCGGGAGCAACG 1167
Query 868 CGTGTTGATAAGTGGAGCAGTCTGTTCAAATCTTCCGATGAGTCTACCGAAAACAAAGAA 927
||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1168 CGTATTGATAAGTGGAGCAATCTGTTCAAATCTTCCGATGAGTCTACCAAAAACAAAGAG 1227
Query 928 AAAGACTCAAAAGAAGGTGCACTCGGAGCAGGTTCAAGATTAGTCAATCTTGGAAAAACT 987
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1228 AAAGACTCGAAAGAAGGTGCACTCGGAGCAGGTTCGAGATTAGTCAATCTTGGAAAAACT 1287
Query 988 AAAGAATGGGAAACAGCTTCCAATAATGCAGATGAGCGAAGAACTCAACCATCAGTGTCA 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 AAAGAATGGGAAACAGCTTCCAATAATGCAGATGAGCGAAGAACTCAACCATCAGTGTCA 1347
Query 1048 CAGTCTGGTACATCTTACTCATCAGCTCTGAAAAACATGACCGCTTCTTCAACTCTGGAG 1107
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1348 CAGTCTGGTACATCTTACTCATCAGCTCTGAGTCACATGACCGCTTCTTCAACTCAGGAG 1407
Query 1108 AAGAAAACTTCTTTGACAAATGAAGTTTCATCTCAAGCATGTAAAGGTGTTGAAAATCAT 1167
||||||| |||| | |||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1408 AAGAAAAATTCTATAACAAATGAAGGTTCATCTCAAGCATGTAAAGGTGTTGAAAATCCT 1467
Query 1168 TGGACATCGGCTTCTCGAGTTCCATCTTTCCGCCAAGACAGTGGAACTTTCAGAAATGCT 1227
|||||||| ||| ||||||||||| || | | ||||||||||||| ||||||||||||
Sbjct 1468 TGGACATCTGCTGCTCGAGTTCCACCTATACACCAAGACAGTGGAGGATTCAGAAATGCT 1527
Query 1228 TCAAAGGAAGGTGACGATGTCAAAGTGAATGCTTATCATCATCAACAAAATCTCCATCCA 1287
||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1528 GCAATGGAAGGTGAAGATGTCAAAGTGAATGCTTATCATCATCAGCAAAATCTCCATCCA 1587
Query 1288 ACACAAAAGGGAACCTCTACTACAGCTAACAATAGAATAGGAACTAGCATTAGCAAGGAA 1347
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1588 ACACAAAAGGGAACCTCTACTACAGCTAACAATAGAATAGTACCTAGCATTAGCAAGGAA 1647
Query 1348 GATCCTGCTGAGGATACATATTCAGTCATCGATTGGGATGCAGCATCTTCCTTTCAAGTC 1407
|| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1648 GAGCCTGCTGAGGATACATATTCATTCATCGATTGGGATGCAACATCTTCCTTTCAAGTC 1707
Query 1408 CATCTGGATGGATTGAACAAGATTTTGGAGGATCCTAAGGATAAGGACTGTTTCAAGAGC 1467
||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1708 CATCTCGATGGACTGAACAAGATTTTGGAGGATCCTAAGGATAAGGAATGTTTCAAGAGC 1767
Query 1468 TTTGCGGGTAACACAGGACAAGCTTCTTCATCTGTAGTGCCTAATTGTTGGGAGGATGAC 1527
|| | |||||||||||||||||||||||||||| | |||||||| ||||||||||||||
Sbjct 1768 TTAGTGGGTAACACAGGACAAGCTTCTTCATCTATGGTGCCTAACAGTTGGGAGGATGAC 1827
Query 1528 TTTGAGGAAAGAAGTATAGCTAAATCGCCTTGTGGATCTTCGTATGTTTCCGCCGCTACA 1587
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||
Sbjct 1828 TTTGAGGAAAGAAGTATAGCTAAATCGCCTTGTGGATCATCGTATGTTTCTGCCGGTACA 1887
Query 1588 GGAGACGTGGTTGATGACATCGGCCGTATGGATAATTTCAAGATGGAAATTGGATCTCCC 1647
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1888 GGAGACGTGGTTGATGACATCGGACGTATGGATAATTTCAAGATGGAAATTGGATCTCCC 1947
Query 1648 ACTGTTGTGGATATATTGACTGAGCTATTGGCGGAAGTCAAGGAGTTGAAGCATACTCAG 1707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1948 ACTGTTGTGGATATATTGACTGAGCTATTGGCGGAAGTCAAGGAGTTGAAGCATACTCAG 2007
Query 1708 ATGAAACAAGCCGAGAGGATGATTACTTTGGAGATGGAGCAGCTTGAATCAAGAAGGGAG 1767
|||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 2008 CTGAAACAAGCTGAGAGGATGATTACTTTGGAGATGGAGCTGCTTGAAACAAGAAGGGAT 2067
Query 1768 ATACTTCGGCTAAAAGGGAGCAATGGAAGTCTTTAAGCATATGGTAACTAGCTACttttt 1827
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 2068 ATACTTCGGCTAAAAGGGAGCAATGGAAGTTTTTAAGCATATGGTAACTAGCTACTTTCT 2127
Query 1828 ttCTTTTGAACAAATGCGAAAAAAGGAAGAA 1858
|||||||||||||||||| |||||||||||
Sbjct 2128 TTCTTTTGAACAAATGCGCTAAAAGGAAGAA 2158
Score = 82.4 bits (44), Expect = 2e-14
Identities = 71/82 (87%), Gaps = 9/82 (11%)
Strand=Plus/Plus
Query 171 AGCTCGGAAACCTTGAATCTCTCTTCGGTGAGTGAGATCGTCTCCTTCAACCTCAAGTAG 230
||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 305 AGCTCGGAAACCTTGAATCTCTCTTCGGT---------CGTCTCCTTAAACCTCAAGTAG 355
Query 231 CTGTTCGCTTAAGGAATCTGAG 252
|||| |||||||||||||||||
Sbjct 356 CTGTGCGCTTAAGGAATCTGAG 377
> AT1G78478.1 | Symbols: MIR833A | MIR833a; miRNA | chr1:29525194-29525294
FORWARD LENGTH=101
Length=101
Score = 65.8 bits (35), Expect = 2e-09
Identities = 47/52 (90%), Gaps = 3/52 (6%)
Strand=Plus/Minus
Query 696 AAAGATGTTTTGGTTTGAACTAGACCGAGGT-CAGACAAACAAGCTGCTCCG 746
||||||||||||||||||||||||||||| | || |||||||| || |||||
Sbjct 50 AAAGATGTTTTGGTTTGAACTAGACCGAG-TACA-ACAAACAAACTCCTCCG 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95230433865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5