BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478447
Length=1373
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11020.1 | Symbols: DREB2B, DREB2 | DRE/CRT-binding protein ... 1775 0.0
> AT3G11020.1 | Symbols: DREB2B, DREB2 | DRE/CRT-binding protein
2B | chr3:3455355-3457214 FORWARD LENGTH=1434
Length=1434
Score = 1775 bits (961), Expect = 0.0
Identities = 1276/1418 (90%), Gaps = 61/1418 (4%)
Strand=Plus/Plus
Query 1 GATTTCTGTAAAAAGTTTTTTGTCTTT--AGaaa-aaaa-aaaaaa-aGACGCTAGAAAG 55
|||||||||||||||||| |||||||| | ||| |||| |||||| |||||||||||||
Sbjct 1 GATTTCTGTAAAAAGTTTGTTGTCTTTACAAAAAGAAAAGAAAAAAGAGACGCTAGAAAG 60
Query 56 AACGCGAAAGCTCT-CGACGAAGATTTGATTTTGATCGATTTAACACGAACCA-AAACAA 113
|||||||||||| | ||| ||||||||| |||||||||| ||||||||||| | ||||||
Sbjct 61 AACGCGAAAGCT-TGCGAAGAAGATTTGCTTTTGATCGACTTAACACGAACAACAAACAA 119
Query 114 CATCTGCGTGATAAAGAATAGATTTTTGCC-CATTAAAGAAGAGATTCGACTCTAATCCT 172
|||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct 120 CATCTGCGTGATAAAGAAGAGATTTTTGCCTAAATAAAGAAGAGATTCGACTCTAATCCT 179
Query 173 GGAGTTATCATTCACGATAGATTCTAAGATTGCGAC--TAAA-AAGAAGATGGCTGTATA 229
||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||
Sbjct 180 GGAGTTATCATTCACGATAGATTCTTAGATTGCGACTATAAAGAAGAAGATGGCTGTATA 239
Query 230 TGAAAAAACTGGAACCGATACA-CCGAAGAAAAGGAAATCGAGGGCTCGAGCAGATGGTT 288
|||| |||| |||||||| || ||||||||||||||||| ||||||||||||| |||||
Sbjct 240 TGAACAAACCGGAACCGA-GCAGCCGAAGAAAAGGAAATCTAGGGCTCGAGCAGGTGGTT 298
Query 289 CAACGGTGGCTGATAGGTTAAAGAAGTGGAAAGAGTACAACGAGATTGTTGAAGCTTCGG 348
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TAACGGTGGCTGATAGGCTAAAGAAGTGGAAAGAGTACAACGAGATTGTTGAAGCTTCGG 358
Query 349 CTATTAAAGATGGAGAGAAACCCAAACGCAAGGTTCCTGCGAAAGGGTCAAAGAAAGGTT 408
|| ||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 359 CTGTTAAAGAAGGAGAGAAACCGAAACGCAAAGTTCCTGCGAAAGGGTCGAAGAAAGGTT 418
Query 409 GTATGAAGGGTAAAGGAGGACCAGATAATTCTCACTGTAGTTTTAGAGGAGTTAGACAAA 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTATGAAGGGTAAAGGAGGACCAGATAATTCTCACTGTAGTTTTAGAGGAGTTAGACAAA 478
Query 469 GGATTTGGGGTAAATGGGTTGCAGAGATACGGGAACCGAATAGAGG-ACAAAGACTTTGG 527
|||||||||||||||||||||||||||| || |||||||| | ||| || |||||||||
Sbjct 479 GGATTTGGGGTAAATGGGTTGCAGAGATTCGAGAACCGAAAATAGGAAC-TAGACTTTGG 537
Query 528 CTTGGTACTTTTCCTACCGCGGAAGAAGCTGCTGCCGCTTATGATGAAGCCGCTAGGGTT 587
|||||||||||||||||||||||| |||||||| |||||||||||||||| |||| | |
Sbjct 538 CTTGGTACTTTTCCTACCGCGGAAAAAGCTGCTTCCGCTTATGATGAAGCGGCTACCGCT 597
Query 588 ATGTACGGTCCATTGGCTCGTCTTAACTTCCCTCAGTCTGTTGTGTCTGAGTTTACTAGT 647
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 598 ATGTACGGTTCATTGGCTCGTCTTAACTTCCCTCAGTCTGTTGGGTCTGAGTTTACTAGT 657
Query 648 ACATCGAGTCAGTCTGAGGTGTGTACGGTTGAAAATAAGGCGGTTCTTCGTGGTGATGTT 707
|| || ||||| ||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 658 ACGTCTAGTCAATCTGAGGTGTGTACGGTTGAAAATAAGGCGGTTGTTTGTGGTGATGTT 717
Query 708 TGTGTGAAGCATGAGGATACTGATTGTGAATCTAAACCATTTAGTCAGATTTTAGATGTT 767
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 718 TGTGTGAAGCATGAAGATACTGATTGTGAATCTAATCCATTTAGTCAGATTTTAGATGTT 777
Query 768 AGGGAAGAGTCTTGTGGAACCAGGCCGGACAGTTGCACGGTTGGACATCAAGATACGAAT 827
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 778 AGAGAAGAGTCTTGTGGAACCAGGCCGGACAGTTGCACGGTTGGACATCAAGATATGAAT 837
Query 828 TCTGT-GCTGAATTACGATTTGCTGTTAGAGTTTGAGCAGCAGTATTGGAGCGAAGCTTT 886
||| | ||||||||||||||||||||||||||||||||||||||||||| || ||| |||
Sbjct 838 TCT-TCGCTGAATTACGATTTGCTGTTAGAGTTTGAGCAGCAGTATTGGGGCCAAGTTTT 896
Query 887 GCAGgagaaagagaaaccgaagcaggaagaagaagagatacagcaga-ag-aagagg--- 941
||||||||||||||||||||||||||||||||| ||||||||||| | || || |||
Sbjct 897 GCAGGAGAAAGAGAAACCGAAGCAGGAAGAAGAGGAGATACAGCA-ACAGCAACAGGAAC 955
Query 942 ag-aTACAGCAACA--T-CAA-C--A---GC-AACAGCAGCA-A--CCGGAT----TTGC 983
|| | ||||||||| | ||| | | || || | ||| | ||| | |||
Sbjct 956 AGCA-ACAGCAACAGCTGCAACCGGATTTGCTTACTGTTGCAGATTACGGTTGGCCTTGG 1014
Query 984 T-TACTG---TTGCAGATTAT--GA-TTCTTTGGGATCCTAATGAGTTCTTTGATATTCA 1036
| || || ||| | || || || ||| ||||||||||||||||| |||||||||| |
Sbjct 1015 TCTAATGATATTGTAAATGATCAGACTTC-TTGGGATCCTAATGAGTGCTTTGATATTAA 1073
Query 1037 TGAACTCCTTGGAGACATGAATGAAGGCATGTTACCTGGTCCCGATCAGAGCCAGGACCC 1096
|||||||||||||| || || | ||| |||||||||| |||||||||| ||||
Sbjct 1074 TGAACTCCTTGGAG--AT--TTG-A---ATG-AACCTGGTCCCCATCAGAGCCAAGACCA 1124
Query 1097 AAACCATGTAAATTCTGGTAGTTATGATCTGCATCCGCTTCATCTCGAGCCACACGATGG 1156
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1125 AAACCACGTAAATTCTGGTAGTTATGATTTGCATCCGCTTCATCTCGAGCCACACGATGG 1184
Query 1157 TCACGAGTTCGATGGTTTGAGTACTCTGGATCTTTGAGAGTTCTGAGGCAATGGT-CTAC 1215
|||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 1185 TCACGAGTTCAATGGTTTGAGTTCTCTGGATATTTGAGAGTTCTGAGGCAATGGTCCTAC 1244
Query 1216 AATACTACAACATAATCTTCGGATTGATAATAGGAGAAACAAGAAATAGGTGTTAATGAT 1275
|| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1245 AAGACTACAACATAATCTTTGGATTGATCATAGGAGAAACAAGAAATAGGTGTTAATGAT 1304
Query 1276 CTGATTCACAATGAAAAAATATTGAATAACTCTATAGTCTTTGTTCTTTCCTTGGATCAT 1335
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1305 CTGATTCACAATGAAAAAATATTTAATAACTCTATAGTTTTTGTTCTTTCCTTGGATCAT 1364
Query 1336 AAAGTGTTGATTCTCATCTATTGAGTTAATATAGAGAA 1373
|| ||||| |||||||||||||||||||||||| |||
Sbjct 1365 GAACTGTTGCTTCTCATCTATTGAGTTAATATAGCGAA 1402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67620134115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5