BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478448
Length=1407
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11030.1 | Symbols: TBL32 | TRICHOME BIREFRINGENCE-LIKE 32 |... 2163 0.0
AT3G61020.1 | Symbols: | pseudogene, similar to P0034A04.28, s... 488 6e-137
> AT3G11030.1 | Symbols: TBL32 | TRICHOME BIREFRINGENCE-LIKE 32
| chr3:3457227-3459380 REVERSE LENGTH=1509
Length=1509
Score = 2163 bits (1171), Expect = 0.0
Identities = 1345/1426 (94%), Gaps = 23/1426 (2%)
Strand=Plus/Plus
Query 1 AAAGaaaaaaaa-aTGACATCGGCGTTGTTATCACCGTCGCACCGTAGAAAACGCCGTCT 59
||| |||||||| |||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct 69 AAA-AAAAAAAATATGACAACGGCGTTGTTTTCACCGTCTAACCGTAGAAAACGCCGTCT 127
Query 60 CACTCATTTCTTCTTCACCGTACTCGCTTTCATCTTACTCGCCGCCTTCATCTACGGTCA 119
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 128 CACACACTTCTTCTTCACCGTACTCGCTTTCATCTTACTCGCCGCCTTCATCTACGGCCA 187
Query 120 TC-ATTTCATCTCTTTCTCCCGTCGATCTCTTCACTCTCCGACAATCGTCCACCAATCCG 178
| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 188 -CGATTTCATCTCTTTCTCTCGTCGATCTCTTCACTCTCCGACGATCGTCCACCAATCCG 246
Query 179 CAATCGTCGTTGTAGTGGACGAacctcctccgcctcca-c--ca---------ccg---t 223
|||||||||||||||| ||||||||||||||||||||| | || ||| |
Sbjct 247 CAATCGTCGTTGTAGTTGACGAACCTCCTCCGCCTCCACCAACATCTCCTCCTCCGCCTT 306
Query 224 ctcctccacctccgtctcctccaccaccgtctcctcctccgccatctccaccaccacctG 283
|||||||||| ||||||||||||||||| |||||||| ||||||||||| || |||||||
Sbjct 307 CTCCTCCACCACCGTCTCCTCCACCACCATCTCCTCCACCGCCATCTCCTCCGCCACCTG 366
Query 284 CTTTTGC-GTTGGGGAAGACGCCGGAAGGATGCGATGTGTTCAAAGGGAATTGGGTCAAA 342
||||||| | | || || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 367 CTTTTGCAG-TAGGTAAAACGCCGGAAGGATGCGATGTCTTCAAAGGGAATTGGGTCAAA 425
Query 343 GACTGGTCAACGCGGCCGTTTTACAGAGAATCTGAGTGTCCGTACATTCAGCCGCAGCTC 402
|||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||
Sbjct 426 GACTGGTCAACGCGTCCACTTTACAGAGAATCCGAGTGTCCGTACATTCAGCCGCAGCTC 485
Query 403 ACTTGCCGCACGCATGGCCGTCCCGATAGTGATTATCAGTCATGGAGATGGCAACCTGAA 462
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 486 ACTTGCCGCACGCATGGCCGTCCCGATAGTGATTATCAGTCATGGAGATGGCGACCTGAT 545
Query 463 TCCTGCTCACTTCCTTCGTTTAACGCGACGGTGATGTTGGAGAGCTTAAGAGGGAAGAAG 522
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 546 TCCTGCTCACTTCCTTCGTTTAATGCGACGGTGATGTTGGAGAGCTTAAGAGGGAAGAAG 605
Query 523 ATGATGTTTGTGGGGGATTCGTTGAACAGAGGAATGTATGTTTCTCTCATCTGTCTTCTT 582
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 ATGATGTTCGTTGGAGATTCGTTGAACAGAGGAATGTATGTTTCTCTCATCTGTCTTCTT 665
Query 583 CATTCACAAATCCCAGAAAATTCTAAATCTATGGATACTTTCGGATCACTCACCGTCTTC 642
||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||
Sbjct 666 CATTCACAAATCCCAGAGAACTCCAAATCCATGGATACTTTCGGATCACTCACCGTCTTC 725
Query 643 TCTCTCAAGGACTACAATGCAACGATTGAGTTCTATTGGGCACCATTTCTTCTTGAATCG 702
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 726 TCTCTCAAGGATTACAATGCAACGATTGAGTTCTATTGGGCACCGTTTCTTCTAGAATCG 785
Query 703 AATTCAGATAACGCTACAGTTCATAGAGTATCAGATCGGATTGTGAGGAAAGGATCGATC 762
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 786 AATTCAGATAACGCAACAGTTCATAGAGTATCAGATCGAATTGTGAGGAAAGGATCGATC 845
Query 763 AACAAACACGGTAGGCATTGGCGAGGCGCTGATATAGTCGTGTTCAACACATACTTGTGG 822
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 846 AACAAACACGGTAGGCATTGGCGAGGGGCTGATATAGTTGTGTTCAACACATACTTGTGG 905
Query 823 TGGAGGACTGGCTTCAAAATGAAGATCTTGGAAGGTTCTTTCAAGGATGAGAACAAGAGA 882
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 906 TGGAGGACTGGCTTCAAAATGAAGATCTTGGAAGGTTCTTTCAAGGATGAGAAGAAGAGA 965
Query 883 ATCGTTGAGATGGAGAGCGAGGATGCATATCGAATGGCGCTT-AAGACTATGGTTAAATG 941
||||||||||||||||| || ||||| ||| |||||||| || |||||||||||||||||
Sbjct 966 ATCGTTGAGATGGAGAGTGAAGATGCTTATAGAATGGCG-TTGAAGACTATGGTTAAATG 1024
Query 942 GGTGAAGAAGAATATGGATCCATTGAAGACAAGGGTTTTCTTTGCTACCATGTCTCCTAC 1001
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1025 GGTGAAGAAGAATATGGATCCATTGAAGACGAGGGTTTTCTTTGCTACCATGTCTCCTAC 1084
Query 1002 TCACTACAAGAGCGAGGATTGGGGAGGCGAACAAGGAAAGAATTGTTACAATCAAACGAC 1061
||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1085 TCATTACAAGGGCGAGGATTGGGGAGGCGAACAAGGAAAAAATTGTTACAATCAAACGAC 1144
Query 1062 ACCGAACCAAGACATGAACCATTGGCCATCAGACTGCAGCAAAACCTTAATGAAAGTGAT 1121
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 ACCGATCCAAGACATGAACCATTGGCCATCAGACTGCAGCAAAACCTTAATGAAAGTGAT 1204
Query 1122 AGGGGAGGAATTAGACCAAAGAGCGGATTTTCCGGTGACAGTACTTAACATTACACAACT 1181
||| |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 1205 AGGAGAGGAATTAGACCAAAGAGCAGAGTTTCCGGTGACGGTACTTAACATTACACAACT 1264
Query 1182 CTCAGGCTATCGGAAAGACGCGCACACGTCAATTTACAAGAAGCAATGGAGCCCATTGAC 1241
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1265 CTCTGGCTATCGGAAAGACGCGCACACGTCAATCTACAAGAAGCAATGGAGCCCATTGAC 1324
Query 1242 GAAGGAGCAGCTAGCAAATCCGGCTAGCTACTCAGACTGTATACATTGGTGCTTGCCTGG 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 GAAGGAGCAGCTAGCAAATCCGGCTAGCTACTCAGACTGTATACATTGGTGCTTGCCTGG 1384
Query 1302 TCTTCAAGATATTTGGAACGAGCTTTTCTTTGCCAAGTTATTTTATCCATGATTCTTTTC 1361
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 TCTTCAAGATACTTGGAACGAGCTTTTCTTTGCCAAGTTATTTTATCCATGATTCTTTTC 1444
Query 1362 TCTAAAGTCAAGAtttttttAGAACTGTAATTGTAAATTATGGTTA 1407
|||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1445 TCTAAATTCAAGATTTTTTTAGAACTGTAATTGTAAATTATGGTTA 1490
> AT3G61020.1 | Symbols: | pseudogene, similar to P0034A04.28,
several hypothetical proteins - Arabidopsis thaliana; blastp
match of 43% identity and 2.2e-46 P-value to GP|29837187|dbj|BAC75569.1||AP004333
P0034A04.28 {Oryza sativa (japonica
cultivar-group)} | chr3:22575591-22577497 FORWARD LENGTH=1907
Length=1907
Score = 488 bits (264), Expect = 6e-137
Identities = 309/330 (94%), Gaps = 6/330 (2%)
Strand=Plus/Plus
Query 1014 CGAGGATTGGGGAGGCGAACAAGGAAAGAATTGTTACAATCAAACGACACCGAACCAAGA 1073
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1446 CGAGGATTGGGGAGGCGAACAAGGAAAGAATTTTTACAATCAAACGACACCGATCCAAGA 1505
Query 1074 CATGAACCATTGGCCATCAGACTGCAGCAAAACCTTAATGAAAGTGATAGGGGAGGAATT 1133
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1506 CATGAACCATTGGCCATCAGACTGCAGCAAAACCTTAATGAAAGTGATAGGAGAGGAATT 1565
Query 1134 AGACCAAAGAGCGGATTTTCCGGTGACAGTACTTAACATTACACAACTCTC-AGGCTATC 1192
|||||||||||| ||||||| |||||| ||||||||||||||||||||| | || |||||
Sbjct 1566 AGACCAAAGAGCAGATTTTCTGGTGACGGTACTTAACATTACACAACTCACGAG-CTATC 1624
Query 1193 GGAAAGACGCGCACACGTCAATTTACAAGAAGCAATGGAGCCCAT-TGACGAAGGAGCAG 1251
|||||||||||||||| ||||| |||||||||| ||||||||||| |||||||||| |||
Sbjct 1625 GGAAAGACGCGCACACATCAATCTACAAGAAGCCATGGAGCCCATATGACGAAGGATCAG 1684
Query 1252 CTAGCAAATCCGGCTAGCTACTCAG-A--CTGTATACATTGGTGCTTGCCTGGTCTTCAA 1308
||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1685 CTAGCAAATCCGGTTAGCTACTCAGTAGGCTGTATACATTGGTGCTTGCCTGGTCTTCAA 1744
Query 1309 GATATTTGGAACGAGCTTTTCTTTGCCAAG 1338
||| ||||||||||||||||||||| |||
Sbjct 1745 AATACTTGGAACGAGCTTTTCTTTGCTAAG 1774
Score = 279 bits (151), Expect = 4e-74
Identities = 189/207 (91%), Gaps = 4/207 (2%)
Strand=Plus/Plus
Query 650 AGGACTACAATGCAACGATTGAGTTCTATTGGGCACCATTTCTTCTTGAATCGAATTCAG 709
|||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 684 AGGATTACAATGCAATGATTGAGTTCTATTGGGCACCGTTTCTTCTTGAATCGAATTCAG 743
Query 710 ATAACGCTACAGTTCATAGAGTATCAGATCGGATTGTGAGGAAAGGATCGATCAACAAAC 769
||||||||| |||| ||| |||||| ||||| ||| |||||||||| | |||||||||||
Sbjct 744 ATAACGCTATAGTTGATATAGTATCTGATCGAATTATGAGGAAAGGCTTGATCAACAAAC 803
Query 770 ACGGTAGGCATTGGCGAGGCGCTGATATAGTCGTGTTCAACACATACTTGTGGTGGAGGA 829
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 804 ACGGTAAGCATTGGCGAGGCGCTGATATAGTCGTGTTCAACATATACTTGTGGTGGAGGA 863
Query 830 CT-G---GCTTCAAAATGAAGATCTTG 852
|| | |||||| |||||||||||||
Sbjct 864 CTAGCTAGCTTCAGAATGAAGATCTTG 890
Score = 246 bits (133), Expect = 4e-64
Identities = 163/178 (92%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 305 CGGAAGGATGCGATGTGTTCAAAGGGAATTGGGTCAAAGACTGGTCAACGCGGCCGTTTT 364
|||||| ||||||||||||||||||||||||||||| ||||| ||||||||| ||||| |
Sbjct 108 CGGAAGTATGCGATGTGTTCAAAGGGAATTGGGTCATAGACTTGTCAACGCGTCCGTTGT 167
Query 365 ACAGAGAATCTGAGTGTCCGTACATTCAGCCGCAGCTCACTTGCCGCACGCATGGCCGTC 424
|| ||||||||||||| ||||||||||| ||||||||| |||||||||||||||| | ||
Sbjct 168 ACCGAGAATCTGAGTGCCCGTACATTCATCCGCAGCTCCCTTGCCGCACGCATGGTCATC 227
Query 425 CCGATAGTGATTATCAGTCATGGAGATGGCAACCTGAATCCTGCTCACTTCCTTCGTT 482
| ||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||
Sbjct 228 CAGATAGTGATTATCAGTCCTGGAGATGGCAACCTGAGTCCTGCTCACTTACTTCGTT 285
Score = 176 bits (95), Expect = 5e-43
Identities = 140/159 (88%), Gaps = 14/159 (9%)
Strand=Plus/Plus
Query 497 TGTTGGAGAGCTTAAGAGGGAAGAAGATGATGTTTGTGGGGGATTCGTTGAACAGAGG-A 555
||||||| |||||||||||||||||||||||| || | | || | ||||||||| |
Sbjct 370 TGTTGGAAAGCTTAAGAGGGAAGAAGATGATG-TT-T----G-TT-G--GAACAGAGGAA 419
Query 556 ATGTATGTTTCTCTCATCTGTCTTCTTCATTCACAAATCCCAGAAAATTCTAAATCTATG 615
|||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 420 ATGTATCTTTCTCTGATCTGTCTTCTTCATTCACAAATCCCAGAAAATTATAAATCCATG 479
Query 616 GA-TA-CTTTCGGATCACTCACCGTCTTCTCTCTCAAGG 652
|| || |||| ||||||||||||||||||||||||||||
Sbjct 480 GATTACCTTT-GGATCACTCACCGTCTTCTCTCTCAAGG 517
Score = 171 bits (92), Expect = 2e-41
Identities = 139/160 (87%), Gaps = 9/160 (6%)
Strand=Plus/Plus
Query 852 GGAAGGTTCTTTCAAGGATGAGAACAAGAGAATCGTTGAGATGGAGAGCGAGGATGCATA 911
|||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1012 GGAAAGTTCTTTCAAGGATGGGAACAAGAGAATCGTTGAGATGGAGAGCGAAGATGCATA 1071
Query 912 TCGAATGGCGCTTAAGACTATGGTTAAATGGGTGAAGAAGAATATGGATCCATTGAAGAC 971
|| || | ||| |||| ||||||||||||||||| ||||||||| |||| |||
Sbjct 1072 TC---TGA---T---GACCATGGGTAAATGGGTGAAGAAGAGTATGGATCCTTTGAGGAC 1122
Query 972 AAGGGTTTTCTTTGCTACCATGTCTCCTACTCACTACAAG 1011
|| ||||||||| ||||||||||||||||||||||||||
Sbjct 1123 AAAAGTTTTCTTTTCTACCATGTCTCCTACTCACTACAAG 1162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69326952645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5