BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478449
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11050.1 | Symbols: ATFER2, FER2 | ferritin 2 | chr3:3463598... 1476 0.0
AT3G61010.2 | Symbols: | Ferritin/ribonucleotide reductase-lik... 263 3e-69
> AT3G11050.1 | Symbols: ATFER2, FER2 | ferritin 2 | chr3:3463598-3465506
FORWARD LENGTH=1027
Length=1027
Score = 1476 bits (799), Expect = 0.0
Identities = 926/984 (94%), Gaps = 22/984 (2%)
Strand=Plus/Plus
Query 1 ATGTTGCTCAAGGCTTCTCCCGctctctctctctTGAGCT----C--CACCGGCGGTGGA 54
||||||| |||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 54 ATGTTGCACAAGGCTTCTCCCGCTCTCTCTCTCTTGAGCTCCGGCTACACCGGCGGTGGA 113
Query 55 AATCTCTTTCCGCCGTCGAGAAATTCGTCGAATCTTCTGTTTTCTCCGAGTGGATCTAGG 114
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 114 AATCTGTTTCCTCCGTCGAGAAATTCGTCGAATCTTCTGTTTTCTCCGAGTGGATCCAGG 173
Query 115 TTTTCTGTTAAGGCGGCGAAAGGAACGAACACGAAGTCGTTAACCGGAGTTGTATTCGAA 174
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 TTTTCTGTTCAGGCGGCGAAAGGAACGAACACGAAGTCGTTAACCGGAGTTGTATTCGAA 233
Query 175 CCTTTTGAGGAGGTGAAGAAAGAATTGGAGCTCGTTCCCACTACCCCTTTTGTTTCTCTC 234
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 234 CCTTTTGAGGAGGTGAAGAAAGAAATGGAGCTCGTTCCCACTACCCCTTTTGTTTCTCTC 293
Query 235 GCTCGCCACAAGTTCTCAGAAGATTCAGAATCTGCCATCAACGATCAGATCAACGTGGAG 294
||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 294 GCTCGCCACAAGTTCTCCGACGATTCTGAATCTGCCATCAACGATCAGATCAACGTGGAG 353
Query 295 TACAATGTCTCCTATGTCTACCATGCCCTGTATGCTTACTTTGACAGAGACAATGTCGGC 354
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 354 TACAACGTCTCGTATGTCTACCATGCCCTGTATGCCTACTTTGACAGAGACAATGTCGGC 413
Query 355 TTGAAAGGTTTCGCCAAGTTCTTTAACGATTCGAGTCTTGAAGAACGAGGTCATGCTGAG 414
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 414 TTGAAAGGTTTCGCCAAGTTTTTTAACGATTCGAGTCTTGAAGAACGAGGTCATGCTGAG 473
Query 415 AAGTTTATGGAGTATCAGAACATGCGCGGTGGGAGAGTGAAGCTGCAGTCTATTTTGATG 474
| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 474 ATGTTTATGGAGTATCAGAACAAGCGTGGTGGGAGAGTGAAGCTGCAGTCTATTTTGATG 533
Query 475 CCCGTCTCTGAGTTTGATCACGAGGAGAAGGGAGATGCATTGCATGCGATGGAGCTTGCA 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CCCGTCTCTGAGTTTGATCACGAGGAGAAGGGAGATGCATTGCATGCGATGGAGCTTGCA 593
Query 535 CTGTCTTTGGAGAAACTTACTAATGAAAAGCTTCTGAAGTTGCAAAGTGTTGGTGTGAAG 594
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 594 TTGTCTTTGGAGAAACTTACAAATGAAAAGCTTCTGAAGTTACAAAGTGTTGGTGTGAAG 653
Query 595 AACAATGATGTTCAGCTGGTTGATTTTGTAGAATCCGAGTTTCTCGGCGAGCAGGTTGAA 654
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 654 AACAATGATGTTCAGCTGGTTGATTTTGTAGAATCTGAGTTTCTAGGCGAGCAGGTCGAA 713
Query 655 GCCATCAAGAAAATCTCAGAGTACGTTGCACAGCTAAGAAGAATAGGAAAGGGTCATGGA 714
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GCTATCAAGAAAATCTCAGAGTACGTTGCACAGCTAAGAAGAATAGGAAAGGGTCATGGA 773
Query 715 GTGTGGCATTTTGATCAAATGCTTCTTAATGA-G-G-TTTAAGGAAGAAGAGTTCAGCTT 771
|||||||||||||||||||||||||| ||||| | | |||||||||| ||||||||||||
Sbjct 774 GTGTGGCATTTTGATCAAATGCTTCTCAATGATGAGGTTTAAGGAAGGAGAGTTCAGCTT 833
Query 772 TTGAGTTAGCTCACAATCTTCCTTGTGCTATACGGCACCGTTCTATCTCTATAACGACGT 831
|||||| | | |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 834 CTGAGTTTGATGACAATCTTCCTTGTGCTATATGGCACCGTTCTATCTCTATAACGACGT 893
Query 832 CTCTAAGTTTGGTCGGGGAAAAGTTGTT-TTGCTCGTTCTTTGTTTTCTTTGTTTT-GGT 889
|||||||||||||||| ||||||| ||| ||||||||||||| ||||||||||||| |||
Sbjct 894 CTCTAAGTTTGGTCGGAGAAAAGT-GTTCTTGCTCGTTCTTTCTTTTCTTTGTTTTTGGT 952
Query 890 CAACCGAATGCTTGAGAGTTGTGAGTGGTAATACTTAATAAATGTAACTCGTAGTCTCAT 949
||||||||||||| |||| ||| | | |||||||| ||||||||||||||| ||
Sbjct 953 TAACCGAATGCTTGTGAGT-GTG--T---A---CTTAATAA-TGTAACTCGTAGTCTGAT 1002
Query 950 AATAAATGCAAGTCCCACTGCTTC 973
|||||||||||||||||||| |||
Sbjct 1003 AATAAATGCAAGTCCCACTGTTTC 1026
> AT3G61010.2 | Symbols: | Ferritin/ribonucleotide reductase-like
family protein | chr3:22571327-22575180 REVERSE LENGTH=1925
Length=1925
Score = 263 bits (142), Expect = 3e-69
Identities = 162/172 (94%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 507 AGATGCATTGCATGCGATGGAGCTTGCACTGTCTTTGGAGAAACTTACTAATGAAAAGCT 566
|||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1693 AGATGCATTGTTTGCGATGGAGCTTGCACTGACTTTGGAGAAACTTATTAATGAAAAGCT 1752
Query 567 TCTGAAGTTGCAAAGTGTTGGTGTGAAGAACAATGATGTTCAGCTGGTTGATTTTGTAGA 626
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1753 TCTGAAGTTACAAAGTGTTGGTGTGAAGAACAATGATGTTAAGCTGGTTGATTTTGTAGA 1812
Query 627 ATCCGAGTTTCTCGGCGAGCAGGTTGAAGCCATCAAGAAAATCTCAGAGTAC 678
||| |||||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct 1813 ATCTGAGTTTCTAGGCGAGCTGGTCGAAGCCATCAAGAAAATCTCAGAGTAC 1864
Score = 108 bits (58), Expect = 1e-22
Identities = 76/84 (90%), Gaps = 3/84 (4%)
Strand=Plus/Plus
Query 283 ATCAACGTGGAGTACAATGTCTCCTATGTCTACCATGCCCT-GTATGCTTACTTTGACAG 341
||| ||||||||||||||||||||||||||||||||||||| | |||| ||| | || ||
Sbjct 1601 ATCGACGTGGAGTACAATGTCTCCTATGTCTACCATGCCCTAG-ATGCCTACATCGAGAG 1659
Query 342 AGACAATGTCGGCTTGAAAGGTTT 365
|||||||||||||||||||| |||
Sbjct 1660 AGACAATGTCGGCTTGAAAG-TTT 1682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47621971356
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5