BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478451
Length=492
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11090.1 | Symbols: LBD21 | LOB domain-containing protein 21... 837 0.0
> AT3G11090.1 | Symbols: LBD21 | LOB domain-containing protein
21 | chr3:3475002-3475604 FORWARD LENGTH=603
Length=603
Score = 837 bits (453), Expect = 0.0
Identities = 484/498 (97%), Gaps = 6/498 (1%)
Strand=Plus/Plus
Query 1 ATGAGAGGGCATGAGCCACGATCAAGCTCATCTTGTGCAGCCTGCAAGCTCTTGAAGAGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 35 ATGAGAGGGCATGAGCCACGATCAAGCTCATCTTGTGCAGCCTGCAAGCTCTTGAAGAGA 94
Query 61 CGATGCACACCCACTTGCATTTTCGCTCCTTATTTCCGCTCAAGTGACTTGATAACTTTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 CGATGCACACCCACTTGCATTTTCGCTCCTTATTTCCGCTCAAGTGACTTGATAACTTTC 154
Query 121 GCCAAAGTCCATAAAGTCTTTGGAGCCAGCAACGTCAGTAAGCTTCTCGGTGAAGTTCCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 GCCAAAGTCCATAAAGTCTTTGGAGCCAGCAACGTCAGTAAGCTTCTCGGTGAAGTTCCT 214
Query 181 GAAGAACAGAGACAAGAAACCGTTAACTCCTTGGCTTATGAAGCTGAGGTTCGTCTCAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 GAAGAACAGAGACAAGAAACCGTTAACTCCTTGGCTTATGAAGCTGAGGTTCGTCTCAAG 274
Query 241 GACCCTGTTTACGGTTGCATAGGAGCCATAGCGTCTCTCCAGAAGAAGATGCTCGAGCTT 300
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 275 GATCCTGTTTACGGTTGCATTGGAGCCATAGCGTCTCTGCAGAAGAAGATGCTCGAGCTT 334
Query 301 CAACATGATCTAGCCGTTGCTCGCACTCGACTACTTGCCCATTCTGGGGTCACCAAC--C 358
||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 335 CAACACGATCTAGCTGTTGCTCGCACTCGACTACTTGCCCATTCTGGGGTCAACAACAGC 394
Query 359 -AAGTGTCCCCTTTGGATGATTCTCCTGAGCTTGCTGCTTTTCTTGATCTTGTACCTTAT 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 CAAGTGTCCCCTTTGGATGATTCTCCTGAGCTTGCTGCTTTTCTTGATCTTGTACCTTAT 454
Query 418 AGTGACTTGATGTTGCTTGATGGGTCTAGT---CTTGATGCTTACTTGTATGATCTTGGA 474
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 455 AGTGACTTGATGTTGCTTGATGGGTCTACTAATCTTGATGCTTACTTGTATGATCTTGGA 514
Query 475 CAGCCCCCTTTTGTATAG 492
||||| ||||||||||||
Sbjct 515 CAGCCTCCTTTTGTATAG 532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23459346649
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5