BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478455
Length=1262
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11150.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1683 0.0
> AT3G11150.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr3:3492867-3494653
REVERSE LENGTH=1289
Length=1289
Score = 1683 bits (911), Expect = 0.0
Identities = 1147/1255 (91%), Gaps = 40/1255 (3%)
Strand=Plus/Plus
Query 1 CGCTCAGCCTCTTCCAAAGTCACATCCATCTTCCAATGGCTTCCTCTTCAGCACACCTCA 60
||||| |||||||||||||||||||||||||| ||||||||| ||||||||| |||||||
Sbjct 20 CGCTCTGCCTCTTCCAAAGTCACATCCATCTTTCAATGGCTTTCTCTTCAGCTCACCTCA 79
Query 61 GCCACCACCAACCTTCGACCAAGCACGGTGGAGCCACGGCGGCGCCTCCGCCGACTCCGT 120
|||||||||||||| || |||||||||||||||||||||||||||||| ||||| ||||
Sbjct 80 ACCACCACCAACCTTTGATCAAGCACGGTGGAGCCACGGCGGCGCCTCCTCCGACCCCGT 139
Query 121 CATGCTCACATCTCAACACCACCAGCAAATCGGAGACAGCAGTCGACGCTCTCACCAGCC 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct 140 CATGCTCACATCTCAACACCACCAGCAAATCGGAGACAGCAGTTGACGCTCTCTCCAGTC 199
Query 181 TTTTCCACCGTCTCCCTCCTTTGCTTTCACTCCCCAACCGCCGCTTCTCCGACTCTGCAT 240
||||||||||||||||||||||||||||||||||||| ||| | || ||| ||
Sbjct 200 TTTTCCACCGTCTCCCTCCTTTGCTTTCACTCCCCAA---CCG----T-CG-CTC--CA- 247
Query 241 CCTCCATCGCTTCTCTTCCGTTGGTATCTCTCTCCGCCGGAGATAGACGTAG-CTGGGAC 299
| | | ||||||||||| ||||||||||||||||||||||||||| | | ||||||
Sbjct 248 --T-C--C-CTTCTCTTCCGATGGTATCTCTCTCCGCCGGAGATAGAC-TTGAATGGGAC 300
Query 300 GATCTTATCTCCGCCGCCGTGACTGATTTAGGCTATTTCCAACTCACTAACGATGACTCC 359
|||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 301 GATCTTATCT---CCGCCGTGACTGATTTCGGCTATTTCCAACTCATTAACGATGACTCC 357
Query 360 GATACTGTTTTCCCTCATGGGCTCGCTGAAGCAGCCGAGTCTGACTCACTCTCGCTCTTA 419
|||| | ||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 358 GATATTCTTTTCCCTCCTGGGATCGCTGAAGCAGCCGAGTCTGACTCACTCTCGCTCTTA 417
Query 420 GAGCTCAGTGAAGAGAA-AATAGAATCGTCATTTCCGAAGACCTGGCCGCTGGGCTACGA 478
||||||||||||||||| || ||||| || |||||||||| |||||||| ||||||||
Sbjct 418 GAGCTCAGTGAAGAGAAGAA-GGAATCATCGTTTCCGAAGAAATGGCCGCTAGGCTACGA 476
Query 479 AGCGGATGCTGAAACGCCATCGTTTTGCCTTGACGCCGACTGTTCAACCGAGTCTAGCGA 538
||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 477 AGCCGATGCTGAAACGCCATCGTTTTGCCTTGACGCCGACTGTTCAACCGACTCGAGCGA 536
Query 539 GTTGAATCTGAGTTCGCTCCGCGAGTTCACTCGGACTCTGGAGAAAGTTGGACTGAAGAC 598
||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 537 GTTAAATCTGAGTTCGCTCCGTGAGTTCACTCGGACTCTAGAGAAAGTTGGACTGAAGAC 596
Query 599 AGTAGAGATGCTGGCGAATGCACTCGGATTTGGATATGACAT-GACCCGGTTTAATACTC 657
||||||||||||||||||||||| || ||||||||||| | ||||||||||||||||
Sbjct 597 GGTAGAGATGCTGGCGAATGCACTTGGGTTTGGATATGA-TTCAACCCGGTTTAATACTC 655
Query 658 TAATGTGGGTTAACCAAGGTGTTCCTGATGATGAACCGGAGATAACCAACGGATTTTATC 717
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 656 TGATGTGGGTTAACCAAGGTGTTCCTGATGATGAACCGGAGGTAACCAACGGATTTTATC 715
Query 718 CTTTTGTTGTCTGTTTACAGTATCAGATAAGGGAACAGAGGTATTGTTTGCTAACCGAGT 777
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 716 CTTTTGTTGTTTGTTTACAGTATCAGATAAGGGAACAGAAGTATTGTTTGCTAACCGAGT 775
Query 778 CTGGTTGGGTGTCCGTTTTGCCTCGAGTTGACTCGGTTCTGGTGACGTTAGGTGACATTG 837
||||||||||||||||||| || ||||||||||||||||| |||||||| ||||||||||
Sbjct 776 CTGGTTGGGTGTCCGTTTTACCCCGAGTTGACTCGGTTCTTGTGACGTTGGGTGACATTG 835
Query 838 CTCAGGTTTGGAGAAATGGAGAGGTCAAAAGAGTGAAATATCGACCGGTGTTGTCTTCAG 897
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 836 CTCAGGTTTGGAGAAATGGAGAGGTCAAAAGAGTGAAATATCGACCAGTGTTGTGTTCAG 895
Query 898 GACAAAACGATGGTCCCAA-AAAGTGTGTAACAATGACATTGATGCTTACACTTCCCATG 956
||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GACAAAAAGATGGTCC-AGTAAAGTGTGTAACAATGACATTGATGCTTACACTTCCCATG 954
Query 957 GACAGTATGGTTTCACCATTGAAAGATATGATCAGTGATGGCGACAAAGAAGAAGAGTAT 1016
||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 955 GACAGTATGGTTTCATCATTGAAGGATATGATCAGTGACGGCGACAAAGAAGAAGAGTAT 1014
Query 1017 GCAGAGGAGGAGGAGGAAGATGGAGGAGCAAGAAGTGATGATAAAAAGGCATTTAGGTCT 1076
|||||||||||||| |||||||||||||||||||||||||| | || |||||||||| ||
Sbjct 1015 GCAGAGGAGGAGGAAGAAGATGGAGGAGCAAGAAGTGATGAGAGAAGGGCATTTAGGCCT 1074
Query 1077 TTTCGTTTCGAGGAATACGCATGGAGAGTGTACCAAGAACGTCTCTTCTTCAGGGATCCA 1136
||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TTTAGTTTCAAGGAGTACGCATGGAGAGTGTACCAAGAACGTCTCTTCTTCAGGGATCCA 1134
Query 1137 CTGGACAGATACAGAATCAAATCTT-AGAAAGATTGATGAACTGATGTTTGGTTTATTTG 1195
|| |||||||||||||||||||||| | ||||||||| |||| |||||||| ||| ||||
Sbjct 1135 CTTGACAGATACAGAATCAAATCTTTA-AAAGATTGACGAACCGATGTTTGATTTGTTTG 1193
Query 1196 TTTC---CG-GGGTTGAATTATTTGGTACTAGAGTTCTTGTTGTTACTAtttttt 1246
|||| | |||||||||| ||||||| |||||||||||||||| ||||||
Sbjct 1194 TTTCTTTCTTGGGTTGAATT----GGTACTATAGTTCTTGTTGTTACT-TTTTTT 1243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62047873620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5