BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478459
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11200.1 | Symbols: AL2 | alfin-like 2 | chr3:3508043-351062... 1781 0.0
AT5G05610.1 | Symbols: AL1 | alfin-like 1 | chr5:1676991-167910... 739 0.0
> AT3G11200.1 | Symbols: AL2 | alfin-like 2 | chr3:3508043-3510627
REVERSE LENGTH=1294
Length=1294
Score = 1781 bits (964), Expect = 0.0
Identities = 1112/1176 (95%), Gaps = 39/1176 (3%)
Strand=Plus/Plus
Query 1 tttttcttttctctctctctc--atatttc-t-t-cttc---ttccgtctgcttctctcc 52
||||| ||||||||||||||| || |||| | | |||| ||||||||||||||||||
Sbjct 20 TTTTTATTTTCTCTCTCTCTCTTATTTTTCTTCTCCTTCTTGTTCCGTCTGCTTCTCTCC 79
Query 53 atctccttcca-a-c------tctctctctcttcATGCCCGAACGCATCGGGTCTTAAAA 104
||||||||||| | | |||||||||||||||||||||||||||||||||| ||||
Sbjct 80 ATCTCCTTCCATATCTATTGTTCTCTCTCTCTTCATGCCCGAACGCATCGGGTCTCAAAA 139
Query 105 TCCATTGATACAGACATCGATCCTTGTCAAC---TA--G-TCT-T-GATCTTAT--AAAT 154
|||||||||||||||||||||||||||||| || | ||| | ||||||| ||||
Sbjct 140 ACCATTGATACAGACATCGATCCTTGTCAACTAGTACTGATCTATAAATCTTATAAAAAT 199
Query 155 CTGTTGAGATATGGCCGCCGCAGCCGTTTCCTCTAACCCTCGCAACGTTGAAGAGATCTT 214
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 200 CTGTAGAGATATGGCCGCCGCAGCCGTTTCCTCTAACCCTCGCACCGTTGAAGAGATCTT 259
Query 215 CAAAGATTATAGCGCTCGTCGTGCCGCTCTTCTTCGTGCTCTCACTAAAGATGTTGATGA 274
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 CAAAGATTATTCCGCTCGTCGTGCCGCTCTTCTTCGTGCTCTCACTAAAGATGTTGATGA 319
Query 275 TTTTTACTCTCAATGCGATCCGGAAAAGGAGAATTTGTGTTTGTACGGACACCCTAATGA 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 TTTTTACTCTCAATGCGATCCGGAAAAGGAGAATTTGTGTTTGTACGGACACCCTAATGA 379
Query 335 GTCATGGGAAGTGAATCTACCAGCAGAGGAAGTTCCTCCTGAGCTACCTGAGCCTGCTCT 394
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 380 GTCATGGGAAGTGAATCTACCAGCAGAGGAAGTGCCTCCGGAGCTACCTGAGCCTGCTCT 439
Query 395 TGGTATCAATTTCGCTAGAGATGGTATGCAGAGGAAAGATTGGCTTTCTCTTGTTGCTGT 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 TGGTATCAATTTCGCTAGAGATGGTATGCAGAGGAAAGATTGGCTTTCTCTTGTTGCTGT 499
Query 455 TCACAGTGATTGTTGGTTGCTCTCTGTTTCTTTCTACTTTGGAGCTCGTCTTAATCGCAA 514
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 500 TCACAGTGATTGTTGGTTGCTCTCTGTTTCTTTCTACTTTGGAGCCCGTCTTAATCGCAA 559
Query 515 TGAGAGGAAGCGGTTATTCAGTCTGATCAACGATCTCCCAACTCTCTTCGATGTAGTGAC 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 TGAGAGGAAGCGGTTATTCAGTCTGATCAACGATCTCCCAACTCTCTTCGATGTAGTGAC 619
Query 575 TGGTAGGAAAGCCATGAAAGACAACAAGCCAAGCTCGGATTCCGGAAGCAAATCCAGAAA 634
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 620 TGGTAGGAAAGCCATGAAAGACAACAAGCCAAGCTCGGACTCAGGAAGCAAATCCAGAAA 679
Query 635 TGGCACTAAGAGATCAATAGACGGGCAGACAAAGAGCTCAACACCGAAACTAATGGAAGA 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 TGGCACTAAGAGATCAATAGACGGGCAGACAAAGAGCTCAACACCGAAACTAATGGAAGA 739
Query 695 GAGCTATGAGGAGgaagaagaagaagaagaCGAGCATGGAGACACTCTCTGTGGGAGCTG 754
||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct 740 GAGCTATGAGGAGGA-G--GAAGAAGAAGACGAGCATGGAGACACTCTCTGTGGAAGCTG 796
Query 755 TGGAGGTAATTACACAAATGAGGAGTTCTGGATTTGCTGTGATGTTTGTGAACGCTGGTA 814
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 797 TGGAGGTCATTACACAAATGAGGAGTTCTGGATTTGCTGTGATGTTTGTGAACGTTGGTA 856
Query 815 CCATGGAAAATGCGTTAAGATAACTCCGGCTAAAGCAGAGAGCATCAAGCAGTATAAATG 874
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 CCATGGAAAATGCGTCAAGATAACTCCGGCTAAAGCAGAGAGCATCAAGCAGTATAAATG 916
Query 875 CCCGCCTTGCTGTGCAAAGAAAGGAAGACAGtgatggtgatgaattgatgatgatgatga 934
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 917 CCCGCCTTGCTGTGCAAAGAAAGGAAGACAGTGATGCTGATCAATTGATGATGATGATGA 976
Query 935 t------CTCTCAGAGAGACTCTGGTTCTCATGTTTTAATCAATATGTTAATCAACtttt 988
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 TGATGATCTCTCAGAGAGACTCTGGTTCTCATGTTTTAATCAATATGTTAATCAACTTTT 1036
Query 989 tttctttttcttttcttttttttctttaacctt-ttaattttAAAGCATACAAAACTCTC 1047
|||||||| ||| ||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1037 TTTCTTTT-CTTCTCTTTTTTT-CTTTAACCTTCTTAATTTTAAAGCATACAAAACTCTC 1094
Query 1048 TCTTTAGATCTCAAGAAAGGGATTTCAAGAAGTTGATAGAGAGAGTAGCAA-CTGTTTGA 1106
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1095 TCTTTAGATCTCAAGAAAGGGATTTCAAGAAGTTGAGGGAGAGAGTAGCAAACTGTTTGA 1154
Query 1107 GTAATATTATTATTATTCATATTTaaaaaaaaaaaa 1142
|||||||||||||||||||||| ||||||||||||
Sbjct 1155 ATAATATTATTATTATTCATATTAAAAAAAAAAAAA 1190
> AT5G05610.1 | Symbols: AL1 | alfin-like 1 | chr5:1676991-1679104
REVERSE LENGTH=1228
Length=1228
Score = 739 bits (400), Expect = 0.0
Identities = 633/742 (85%), Gaps = 29/742 (4%)
Strand=Plus/Plus
Query 186 TCTAACCCTCGCAACGTTGAAGAGATCTTCAAAGATTATAGCGCTCGTCG-TGCCGCTCT 244
||||||||||||| ||| |||||||||||||| |||| ||||| |||||| | ||| | |
Sbjct 178 TCTAACCCTCGCACCGTCGAAGAGATCTTCAAGGATTTTAGCGGTCGTCGCT-CCGGTTT 236
Query 245 TCTTCGTGCTCTCACTAAAGATGTTGATGATTTTTACTCTCAATGCGATCCGGAAAAGGA 304
|||||| |||||| | ||||||||| | || |||||| |||||||||||||| |||
Sbjct 237 TCTTCGAGCTCTCTCCGTAGATGTTGACAAGTTCTACTCTTTATGCGATCCGGAAATGGA 296
Query 305 GAATTTGTGTTTGTACGGACACCCTAATGAGTCATGGGAAGTGAATCTACCAGCAGAGGA 364
|||| ||||||||||||||||||| |||| | |||||||||||||||| ||||| |||||
Sbjct 297 GAATCTGTGTTTGTACGGACACCCGAATGGGACATGGGAAGTGAATCTTCCAGCTGAGGA 356
Query 365 AGTTCCTCCTGAGCTACCTGAGCCTGCTCTTGGTATCAATTTCGCTAGAGATGGTATGCA 424
||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 357 AGTGCCTCCGGAGCTACCTGAGCCAGCTCTTGGAATCAATTTCGCTAGAGATGGTATGCA 416
Query 425 GAGGAAAGATTGGCTTTCTCTT-GTTGCTGTTCACAGTGATTGTTGGTTGCTCTCTGTTT 483
| | ||||||||||| ||| || |||||||| ||||||||||||||||| ||||||||||
Sbjct 417 GCGTAAAGATTGGCTCTCT-TTAGTTGCTGTCCACAGTGATTGTTGGTTACTCTCTGTTT 475
Query 484 CTTTC-TACTTTGGAGCTCGTCTTAATCGCAATGAGAGGAAGCGGT-TATTCAGTCTGAT 541
| ||| ||||| || |||||||||||||||||||||||||| | || |||| ||||||||
Sbjct 476 C-TTCTTACTTCGGCGCTCGTCTTAATCGCAATGAGAGGAAAC-GTCTATTTAGTCTGAT 533
Query 542 CAACGATCTCCCAACTCTCTTCGATGTAGTGACTGGTAGGAAAGCCATGAAAGACAACAA 601
||||||||||||||||||||| || |||||||| ||||||||| |||| |||||| ||
Sbjct 534 CAACGATCTCCCAACTCTCTTTGAAGTAGTGACGGGTAGGAAACCCATCAAAGACGGTAA 593
Query 602 GCCAAGC-TCGGAT-TCCGGAAGCAAATCCAGAAATGGCACTAA-GAGATCAATAGACGG 658
|||||| | |||| || ||||||||||||||||| ||| ||| ||||||||| || ||
Sbjct 594 ACCAAGCAT-GGATCTC-GGAAGCAAATCCAGAAACGGCG-TAAAGAGATCAATTGAAGG 650
Query 659 GCAGACAAAGAGCTCAACACCGAAACTAATGGAAGAGAGCTATGAGGAGgaagaagaaga 718
||||||||||||| | | |||||||||||||||||||||||||| || | ||||| ||
Sbjct 651 GCAGACAAAGAGC--A-CGCCGAAACTAATGGAAGAGAGCTATGA--AG-ATGAAGACGA 704
Query 719 agaagaCGAGCATGGAGACACTCTCTGTGGGAGCTGTGGAGGTAATTACACAAATGAGGA 778
|| | | | ||||||||| |||||||| || |||||||| || |||||||| || ||
Sbjct 705 TGA-G-C-A---TGGAGACACACTCTGTGGAAGTTGTGGAGGAAACTACACAAACGACGA 758
Query 779 GTTCTGGATTTGCTGTGATGTTTGTGAACGCTGGTACCATGGAAAATGCGTTAAGATAAC 838
||||||||| || |||||||| |||||||| ||||||||||| || || || ||||||||
Sbjct 759 GTTCTGGATATGTTGTGATGTGTGTGAACGTTGGTACCATGGGAAGTGTGTGAAGATAAC 818
Query 839 TCCGGCTAAAGCAGAGAGCATCAAGCAGTATAAATGCCCGCCTTGCTGTGCAAAGAAAGG 898
|| || |||||||||||||||||||| || |||||||| ||||||| | ||||||||
Sbjct 819 ACCAGCCAAAGCAGAGAGCATCAAGCAATACAAATGCCCTTCTTGCTGCACTAAGAAAGG 878
Query 899 AAGACAGtgatggtga-tgaat 919
|||||||||| | ||| |||||
Sbjct 879 AAGACAGTGA-G-TGAATGAAT 898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58784838195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5