BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478460
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11210.1 | Symbols: | SGNH hydrolase-type esterase superfam... 1858 0.0
> AT3G11210.1 | Symbols: | SGNH hydrolase-type esterase superfamily
protein | chr3:3510663-3513060 REVERSE LENGTH=1370
Length=1370
Score = 1858 bits (1006), Expect = 0.0
Identities = 1272/1393 (91%), Gaps = 47/1393 (3%)
Strand=Plus/Plus
Query 1 GAGACGTTCATGCATTTAATCTCGCACCTTACGACAAAGAGTGAGAGAGAAGATCGCTCA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 GAGACGTTCATGCATTTAATCTCGCACCTTACGACAAAGAGTGAGAGAGAGGATCGCTCA 60
Query 61 GGTTTGTTCGTTCTTCACCGGCCGAttttttttCATTCTGCGGTGGGAGAAAGAACTGCC 120
||||||||| |||||||||| ||| || | || |||||||||||||||||| |||
Sbjct 61 GGTTTGTTC-ATCTTCACCGGACGA----TTAGC-TTTTGCGGTGGGAGAAAGAACGGCC 114
Query 121 TGTCTTCAGCTCTGAAACAGAGGAAGAGAGAGGTTAGGAAGGAGACAATGGTTGGACCCT 180
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 115 TGTCTTCAGCTCTGAAACAGAGGAACAGAGAGGTTAGGAAGGAGACAATGGTTGGACCCG 174
Query 181 CGCGGCCTCAGATCGTTTTGTTTGGATCTTCCATTGTTCAGATGAGCTTTGGCCATGGTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 CGCGGCCTCAGATCGTTTTGTTTGGATCTTCCATTGTTCAGATGAGCTTTGGCCATGGTG 234
Query 241 GTTGGGGCGCCATTCTTTCCGAGGTCTACGCTCGTAAGGCCGACATCATTCTGCGAGGAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GTTGGGGCGCCATTCTTTCCGAGGTCTACGCTCGTAAGGCCGACATCATTCTGCGAGGAT 294
Query 301 ATTATGGATGGAACTCTTCTCGTGCTTTGGAAGTTGTCGACAAAGTGTTCCCCAAGGATG 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 295 ATTATGGATGGAACTCTTCTCGTGCTTTGGAAGTTGTCGACCAAGTGTTCCCCAAGGATG 354
Query 361 CTGCAGTACAACCTTCTTTGGTCGTTGTCTATTTTGGAGGAAACGACTCAATGGCGCCTC 420
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 355 CTGCAGTACAACCTTCTCTGGTCATTGTCTATTTTGGAGGAAACGACTCAATGGCGCCTC 414
Query 421 ACCCTTCTGGTCTAGGACCTCACGTACCACTTACTGAATACGTTGATAACATGAAGAAGA 480
|| | ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 415 ACTCGTCTGGACTAGGACCTCATGTACCACTTACTGAATATGTTGATAACATGAAGAAGA 474
Query 481 TCGCTCTTCATCTTCAGAGCCTTTCAGACTCCACCCGTATCATATTTCTTAGTTGTCCTC 540
|||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||
Sbjct 475 TCGCTCTTCATCTTCAGAGCCTTTCAGACTTCACCCGAATCATATTTCTTAGTTCTCCTC 534
Query 541 CAGTGGACGAGGCCAAAGTTCGTCAGAACCAAAGCCCATACTTGAGCGAGGTAATTCGCA 600
||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 535 CAGTGGATGAGGCTAAAGTTCGCCAGAACCAAAGCCCATACTTGAGCGAGGTAATCCGCA 594
Query 601 CAAACGAGCTCTGCAAGACTTATTCAGATGCTTGTGTGGAGTTGTGCCAAGAACTCGGCC 660
||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 595 CAAACGACCTCTGCAAGACTTATTCAGATGCTTGTGTAGAGCTGTGCCAAGAACTCGGCC 654
Query 661 TAGAAGTAGTTGATCTCTTCTCTACTTTTCAAAAAGCAGATGACTGGAAAACTGTTTGCT 720
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 655 TAGAAGTAGTTGATCTCTTCTCTACTTTTCAGAAAGCAGATGACTGGAAAACTGTTTGCT 714
Query 721 TCACAGACGGGATTCATTTGTCAGCACAAGGAAGCAAACTAGTGGCGGCAGAGATACTAA 780
|||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||
Sbjct 715 TCACAGACGGGATTCATTTGTCAGCACAAGGAAGCAAAATAGTAGCGGGAGAGATACTAA 774
Query 781 GAGTGGTTAAAGAAGCAGAATGGAATCCATCACTTCACTGGAAATCAATGCCAACCGAAT 840
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 775 GAGTGGTTAAAGAAGCGGAATGGCATCCATCACTTCACTGGAAATCAATGCCAACAGAAT 834
Query 841 TCGCCGAGGACTCTCCTTATGATCTTGTTTCAGCAGATGGCAAACAAACAGTAAATTCAT 900
|||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 835 TCGCAGATGACTCTCCTTATGATCTTGTATCAGCAGATGGCAAACAGACAGTAAATTCTT 894
Query 901 CAGAATGGACTTATTTCTGGGAAGAACAATGGGACTAAACATTTcaacacaca-a-caac 958
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 895 CAGAATGGACTTATTTCTGGGAAGAACAATGGGACTAAACATTTCAACACACACAACAAC 954
Query 959 aacaacaTGACCCTATCTTTATATAATTCACTGTCTTAATGTGATAAAGCTTTGCTTTAG 1018
||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 955 AACAACAAGACCCTATCTTCACATAATTCACTGTCTTAATGTGATAAAGCTTTGCTTTAG 1014
Query 1019 ATTGTTCTACAGGACTACAAGTGTCTCTGCTATAATCTGATTAAA---CGTT--ACCATT 1073
|||||| |||| ||||||||||||||||||||||||||| | || | | |
Sbjct 1015 ATTGTT-TACAT---TACAAGTGTCTCTGCTATAATCTGATTCAGTTTCGCTCGAAAAAC 1070
Query 1074 -TTA--ATTT-AA--TTTATACTTATCTAAAACTTAAATCAAAGAAACACAC-AAGTTTG 1126
||| |||| || |||||||||||||||| ||||||||| |||||||||| |||||||
Sbjct 1071 GTTACCATTTTAAAGTTTATACTTATCTAAATCTTAAATCACAGAAACACACCAAGTTTG 1130
Query 1127 TGTTCAAGTAAATTCtttttttCTTGTCTACGTTTTACGTTTAGACATCAACAAATGTCT 1186
||||||||||| ||||||||||||||| ||| |||||| |||||| |||||||||||
Sbjct 1131 TGTTCAAGTAATTTCTTTTTTTCTTGTTTACATTTTAC----AGACATTAACAAATGTCT 1186
Query 1187 TGAAATCGACATGTC-TAAACATTCC-C--GACAGGGGTTTAGTGTTTACGGCAAAATGA 1242
|||| | ||| | ||| || ||| | |||||||||||||||||| | || |
Sbjct 1187 -GAAA-CT-CATCACATAA-CACTCCTCCAGACAGGGGTTTAGTGTTTT-G--AAG--G- 1236
Query 1243 CTAAAATCACAAAGTAACTATATTTGGGCCTTTAACaaaaaaaaa----aGGAGATTGGA 1298
||||||||||||||||||| ||||||||| |||||||||| |||||||||||
Sbjct 1237 -TAAAATCACAAAGTAACTAAATTTGGGCCGATAACAAAAAAGTCGCTTAGGAGATTGGA 1295
Query 1299 ATTATTTGGGCCGAAGACCTAACACTTAAGGGCCCAAATAAATTGCCATTTACCTAAAAA 1358
||||||||||| || ||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1296 CTTATTTGGGCCTAAAACCTAACACTTAAGGGCCCAACTAAAATGCCATTTACCTAAAAA 1355
Query 1359 GTGACGCATCTTC 1371
| |||||||||||
Sbjct 1356 GCGACGCATCTTC 1368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67519733025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5