BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478461
Length=1529
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11220.2 | Symbols: ELO1 | Paxneb protein-related | chr3:351... 1164 0.0
> AT3G11220.2 | Symbols: ELO1 | Paxneb protein-related | chr3:3513531-3516408
REVERSE LENGTH=1635
Length=1635
Score = 1164 bits (630), Expect = 0.0
Identities = 728/773 (94%), Gaps = 16/773 (2%)
Strand=Plus/Plus
Query 770 AAACAGCAGTAACATTGCATCCATTGGTCGCATCGCAATCCAGTCATTCAGCTCTCCCCT 829
||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||
Sbjct 844 AAACAGCAGTAACATTGCATCTATTGGCCGCATCGCAATCCAGTCTTTTTGCTCTCCCCT 903
Query 830 GTGTGAGTATTCTGATAAGGAATCAGACATGCTCTCGTTCATAAGATTGCTGAAAAGTAT 889
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 904 GTGTGAGTATTCTGAAAAGGAATCAGACATGCTCTCATTCATAAGATTGCTGAAAAGTAT 963
Query 890 GCTTATGGTTTCAAATGCGGTAGCCATTGTTACTTTCCCGCCTTCCTTGCTCTCACCATC 949
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 964 GCTTATGGTTTCAAATGCGGTAGCCATTGTTACTTTCCCGCCTTCCCTGCTCTCCCCATC 1023
Query 950 TTCCTCAAAAAGACTGCAGCATATGGCAGATACCTTGCTCTCTATCAAAGCAATTCCAGA 1009
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1024 TTCCTCTAAAAGACTGCAGCATATGGCAGATACCTTGCTCTCTATCAAAGCAATCCCAGA 1083
Query 1010 TGGTGACAAGGAGTTGGAGAAACTCCTCACGGGCTACAAGGATATAAATGGATTCCTCAA 1069
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1084 TGGTGACAAGGAATTGGAGAAACTCCTCACTGGCTACAAGGATATAAATGGATTCCTCAA 1143
Query 1070 CATACACAAGGTTGCTCGTATCAACACACAGGTGCCTGTAATTCTTGAGGCAAAAACCTT 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 CATACACAAGGTTGCTCGTATCAACACACAGGTGCCTGTAATTCTTGAGGCAAAAACCTT 1203
Query 1130 CTCAATGAGCCTGAAGAAGAGAAGATTCTTGGCTCTAGAGTGTCTGAATCAAGCCCCTGT 1189
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 CTCAATGAGCTTGAAGAAGAGAAGATTCTTGGCTCTAGAGTGTCTGAATCAAGCCCCTGT 1263
Query 1190 AGACGGGTCCAGTGGAACATCATATGGCACATCTGGTAGCTGCTCATCCAAATCCGGAGC 1249
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1264 AGACGGGTCCAGTGGAACATCGTATGGCACATCTGGTAGCTGCTCATCCAAATCCGGAGC 1323
Query 1250 ACTCGATTTTTGAGTTGTTGAGTTAGTCTTTCTTTTCTTCTT---AGtttttttttttCC 1306
||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1324 ACTAGATTTTTGAGTTGCTGAGTTAGTCTTTCTTTTCTTCTTCTTAGTTTTTTTTTTTCC 1383
Query 1307 -TCTCCATTGAGTTCTCTGATTTCACTCAGTAACCTGAGCAATTACATTAT-AG-A--GT 1361
||||||||||||||||| | |||||||| ||||||||||| ||||||||| | | ||
Sbjct 1384 CTCTCCATTGAGTTCTCTAAGTTCACTCACTAACCTGAGCAGTTACATTATTATTATAGT 1443
Query 1362 GTTTGGTCTTAAAAACAGTTTTTGACAGCAATATGTTTT-TATA-ATGAAATCTAATTTA 1419
||||||||||||||||||||| |||||||||||||||| | | || || | ||||||
Sbjct 1444 CTTTGGTCTTAAAAACAGTTTT-GACAGCAATATGTTTTGTTTTTAT-AA-TGAAATTTA 1500
Query 1420 TTTCATTTCTGTATTATATA--CTCTTATGAAACTATGACCAATGATAGATGCTAGTTAC 1477
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1501 TTTCATTTCTGTATTATATATACTCTTATGAAACTATGACCAATGATAGATGCTAGTTAC 1560
Query 1478 TAAACGTTGGATGTAATCACTT-AACATGTTCACGTGGTTATTTGTTGAACCA 1529
|||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1561 TAAACGTTCAATGTAATCACTTCAACATGTTCACGTGGTTATTTGTTGAACCA 1613
Score = 1068 bits (578), Expect = 0.0
Identities = 724/790 (92%), Gaps = 27/790 (3%)
Strand=Plus/Plus
Query 1 GGTTCCTTCTGGTTCTTCCACGTTAGTCGCCGGAGACGCCAACCAAAGAGCACCTGAA-- 58
||||||||||| ||| |||| ||||||||||||||||| | |||||||||||||||
Sbjct 13 GGTTCCTTCTGCTTCGTCCAAGTTAGTCGCCGGAGACG---A-CAAAGAGCACCTGAATT 68
Query 59 -GTACGAGAAAAGATTCCTACTTCTGAGACCATCTTCATAAACCTGAAGCAAAGACGAAG 117
|| |||||||||||||||||||||||||||||||||| |||| || |||||||||||||
Sbjct 69 GGTGCGAGAAAAGATTCCTACTTCTGAGACCATCTTCACAAACGTGTAGCAAAGACGAAG 128
Query 118 CCTTTGA-TTTGTAGC-CTTT-T-TTGGTTTGGGATTTTCTAGATTTTGAACCTGGAGCT 173
||||||| ||| | | |||| | || || | | | || ||||||||||||||||||
Sbjct 129 CCTTTGAGTTT-T--CTCTTTCTGTTACTTAGAAAATAGCT-GATTTTGAACCTGGAGCT 184
Query 174 GAGTTCCGTATGTG---A-TT-A--C--TTATGGCTGCATCAAACGTTCGTAGTAGTAGC 224
||||||||| |||| | || | | ||||||||||| ||||||||||||||||||||
Sbjct 185 GAGTTCCGTGTGTGATTACTTAATTCGGTTATGGCTGCACCAAACGTTCGTAGTAGTAGC 244
Query 225 AGCTTCTCTCGCAACATATCAGTTGTGTCATCGCCTCAAATTCCTGGTCTCAAAAGTGGT 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 AGCTTCTCTCGCAACATATCAGTTGTGTCATCGCCTCAAATTCCTGGTCTCAAAAGTGGT 304
Query 285 CCTAATGGCACAGCTTTTATATCGACTGGGATTCGTGATCTTGACAGGATACTAGGTGGT 344
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 305 CCTAATGGCACAGCTTTTATATCGTCAGGGATTCGTGATCTTGACAGGATACTAGGTGGT 364
Query 345 GGGTATCCTTTGGGAAGCTTAGTAATGGTGATGGAAGATCCTGAAGCACCGCATCATATG 404
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 365 GGGTATCCTTTGGGAAGCTTAGTAATGGTAATGGAAGATCCTGAAGCACCGCATCATATG 424
Query 405 GATCTGTTAAGAACTTTCATGTCTCAGGGGCTTGTTAACAATCAACCACTTCTTTATGCT 464
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 GATCTGTTAAGAACTTACATGTCTCAGGGGCTTGTTAACAATCAACCACTTCTTTATGCT 484
Query 465 AGTCCTTCGAAAGATCCGAGAGGGTTTCTTGGCACTTTGCCGCATCCTGCATCATCCAAA 524
|||||||| |||||||| | |||||||||||| |||||||||||||||||||||||||||
Sbjct 485 AGTCCTTCAAAAGATCCAAAAGGGTTTCTTGGTACTTTGCCGCATCCTGCATCATCCAAA 544
Query 525 GAGGATAAGTCTACTGCGCCAGACCCTGATCAGGGAGAGAGCTTGAGGATCGCTTGGCAG 584
||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 545 GAGGATAAGCCTACTGCGCCCGACCCTGATCAGGGAGAGAGCTTGAGGATTGCTTGGCAG 604
Query 585 TATCGGAAGTATTTGGAAAGCCAGAAGAATTCTATTGATGATTACTCAAATGACTTTGAT 644
||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||
Sbjct 605 TATCGGAAGTATTTGGAAAACCAGAAGAATGCTATTGATGATTACTCCAATGACTTTGAT 664
Query 645 ATGAGAAAGCCCTTGGAGAGGCAATTTCTTAGCGGACGGCCGATAGATTGTGTCAGCCTG 704
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 665 ATGAGAAAGCCCTTGGAGAGGCAATTTCTGAGCGGACGGCCCATAGATTGTGTCAGTCTG 724
Query 705 TTAGATTCTTCAGATCTTTCCGTTGCTCAAGACCACTGCT-CTACCTTTTTATCAAAATT 763
||||| ||||||||||||||| ||||||| |||||||| | |||| ||||||||||||||
Sbjct 725 TTAGACTCTTCAGATCTTTCCATTGCTCAGGACCACTG-TGCTACGTTTTTATCAAAATT 783
Query 764 TTCAAG-AAA 772
| |||| |||
Sbjct 784 TCCAAGCAAA 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75451419135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5