BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478462
Length=671
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11230.2 | Symbols: | Yippee family putative zinc-binding p... 961 0.0
> AT3G11230.2 | Symbols: | Yippee family putative zinc-binding
protein | chr3:3516678-3518385 FORWARD LENGTH=686
Length=686
Score = 961 bits (520), Expect = 0.0
Identities = 565/586 (96%), Gaps = 5/586 (1%)
Strand=Plus/Plus
Query 87 CTTTTATAGATTCTGGGAATAGTTTAGAGATGGGGAGATTGTTCTTGGTGAATTTGGAAG 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 CTTTTATAGATTCTGGGAATAGTTTAGAGATGGGGAGATTGTTCTTGGTGAATTTGGAAG 135
Query 147 GCAAGTCTTACAGTTGTAAGCACTGCAAGACCAATCTTGGTCTCTGTGATGATGTCGTCT 206
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 136 GCAAGTCTTACAGTTGTAAGCACTGCAAGACCAATCTTGCTCTCTGTGATGATGTCGTCT 195
Query 207 CTAAGTCTTTTCAATCCCGACATGGGAAAGCTTACCTCTTCAGTAAGGTAGTGAATGTTT 266
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 196 CTAAGTCTTTTCAGTCCCGACATGGGAAAGCTTACCTCTTCAGTAAGGTAGTGAATGTGT 255
Query 267 ATGCTGGGAAGAAGGAAGATAGGATGATGATGACGGGAATGCACACCGTAGTCGATATTT 326
||||||| ||||| ||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 256 ATGCTGGCAAGAAAGAAGATAGGATGATGATGACGGGAATGCATACGGTGGTCGATATTT 315
Query 327 ACTGTGTCAAATGTGGCTCTTATGTTGGATGGAAATATGAGTTTGCTTTTGAGAAGAATC 386
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 ACTGTGTCAAATGCGGCTCTTATGTTGGATGGAAATATGAGTTTGCTTTTGAGAAGAATC 375
Query 387 AAAAGTACAAGGAAGGAAAATCGGTTCTCGAAAGGTACAAGGTTTGGGGTCCAGATGGGA 446
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 376 AAAAGTACAAGGAAGGAAAATCTGTTCTCGAAAGGTACAAGGTCTGGGGTCCAGATGGGA 435
Query 447 ACAATTATTGGGTGGCTCAAGAAGTTGAAGCCGGAGATAGCGATACTGATGATGCTTGAT 506
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 436 ACAATTATTGGGTGGCTCAAGAAGTTGAAGCCGGAGACAGCGATACTGATGATGCTTGAT 495
Query 507 -CTCATCATTCATATCTGATTTGTACATTCCCTCCTCCAACTCTTTCATCTTTCTTTATT 565
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 496 TCTCATCATTCATATCTGATTTGTACATTCCCTCC---AACTCTTTCATTTTTCTTTATT 552
Query 566 CTTTTTTCCTCATTTTGTAAACCATCCATCTTACATTAGAACAGCTTCCAAGATCAATTG 625
|||||| ||||||||||||||||||| |||||||||||||||||||||| ||| ||||||
Sbjct 553 CTTTTT-CCTCATTTTGTAAACCATCTATCTTACATTAGAACAGCTTCCGAGACCAATTG 611
Query 626 TTTGGTCATTGCTGCAACTACTTTGGACACATAAGTTAAAGATCTC 671
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 TTTGGTCATTGCTGCAACTACTTTGGACACATAAGTTAAAGATCTC 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32451258962
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5