BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478464
Length=1897
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11240.1 | Symbols: ATE2, ATATE2 | arginine-tRNA protein tra... 2737 0.0
AT5G05700.1 | Symbols: ATE1, DLS1, ATATE1 | arginine-tRNA prote... 525 6e-148
> AT3G11240.1 | Symbols: ATE2, ATATE2 | arginine-tRNA protein transferase
2 | chr3:3518484-3521115 REVERSE LENGTH=2022
Length=2022
Score = 2737 bits (1482), Expect = 0.0
Identities = 1736/1858 (93%), Gaps = 19/1858 (1%)
Strand=Plus/Plus
Query 1 ATCGTTGTGAATTCTCTCCGATCATGTCGTCGAAGAAAGCGAAGACGAAGAACGAGGCAA 60
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATCGTTGTGGATTCTCTCCGATCATGTCGTCGAAGAAAGCGAAGACGAAGAACGAGGCGA 60
Query 61 GTAGTAGCCGTGGTGGCGTCGGCGGAGAGAGTGTAGTCGCTGATTGTGGACGAAATAAAT 120
|||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GTAGCAGCCGTGGTGGCATCGGCGGAGAGAGTATAGTCGCTGATTGTGGACGAAATAAAT 120
Query 121 CCACTTGCGGTTACTGTAAATCTTCTACCCGCTCCAGTATCTCTCACGGTTTATGGACAG 180
| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 121 CAACTTGCGGTTACTGTAAATCTTCTACCCGCTTTAGTATTTCTCACGGTTTATGGACAG 180
Query 181 AGAGACTCACCGTTAATGACTACCAAGCTCTTCTTGACCGTGGATGGAGACGGTCTGGCT 240
|||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||
Sbjct 181 AGAGACTCACCGTTAATGACTATCAAGCTCTTCTTGACAGTGGATGGAGACGATCTGGCT 240
Query 241 GCTTTCTTTACAAACCTGAGATGGATAAAACTTGTTGCCCTTCTTATACAATCCGCTTGA 300
||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 241 GCTATCTTTACAAACCTGAGATGGAGAAGACTTGTTGCCCTTCTTATACAATCCGCTTGA 300
Query 301 AAGCAAGTGATTTTGTTCCTTCTAAGGAACAGCAGCGAGTGCGTAGAAGACTAGAAAGGT 360
|||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 301 AAGCAAGTGATTTTGTCCCTTCTAAGGAGCAGCAGCGAGTGCGTAGAAGAATAGAAAGGT 360
Query 361 TCTTGGATGGCGAACTAGATGCGAAGCCGAGTGAGCAGACAGAATATCAAGACATTTCTT 420
| |||||||| ||||||||||||||||||||||||||||||||| ||||||| | ||||
Sbjct 361 TTTTGGATGGTGAACTAGATGCGAAGCCGAGTGAGCAGACAGAAGATCAAGATGTCTCTT 420
Query 421 TCTCCCGCGAAGTTTCAGTGTCTGTGAGAAAATCACTTGGAGCTGCTAAGAGAGAACAAA 480
||||||| |||||||||||||| |||| ||||||||||||||||||||| |||||| |||
Sbjct 421 TCTCCCGTGAAGTTTCAGTGTCAGTGAAAAAATCACTTGGAGCTGCTAAAAGAGAAAAAA 480
Query 481 ACAATGAAGTGGAACCAATCATGAAACATCTGTCTGAACAAATTGATAATGCGGTACAAA 540
|||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 481 ACAATGAACTGGAACCAATCATGAAAGATTTGTCTGAACAAATTGATAATGCGGTACAAA 540
Query 541 GATGCATACAAAGTGGTGAATTTCCTTCTAATATCCAGATTCCCAAAGCTTCAGTAAAGA 600
||||||||| |||||||| |||||||||||| | |||||||||||||||||||||||||
Sbjct 541 AATGCATACAGAGTGGTGAGTTTCCTTCTAATGTTCAGATTCCCAAAGCTTCAGTAAAGA 600
Query 601 AAGTTCTCTCTGCTAAAAGGAAGAAACTAGCTGAAGGGCCAGAAGAACTCTTATACACCA 660
||||| | |||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 601 AAGTTTTTTCTGCTAAAAGGAAGAAACTAGCTGAAGGGTCAGAAGACCTCTTATACACCA 660
Query 661 GCAACATTTCTTTTCCAATAGTAGCTGCTATAAAACGCACAGACACATCT-GAGAAAGGC 719
|||||||| |||||||||||||||||||||| |||| |||| | |||| | |||||||||
Sbjct 661 GCAACATTGCTTTTCCAATAGTAGCTGCTATGAAACACACACAGACAT-TGGAGAAAGGC 719
Query 720 AAAAACGTAGAAGAAAACAGATTATCACCAGAGGCTGTTTCTGAGAAGTTGTTAATTGCA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 720 AAAAACGTAGAAGAAAACAGATTATCACCAGAGGCTGTTTCTGAGAAGTTGTTAAGTGCA 779
Query 780 ATGAATAAGGTAGAAGAGTTTACTGGTTTTTCTGTTAAGGTCTCCAAGGGCCATATCAAC 839
||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 780 ATGAATAAGGTTGGAGAGTTTACTGGTTTTTCTGTTAAGGTCTCCAAGGGTCATATCAAC 839
Query 840 TTCCTTTCAGCTACCGGAGTTTCTTCCTCAGATAGAAATGAAGGTGAAGAAAGCCTCTGT 899
||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||
Sbjct 840 TTCCTTTCAGCTACCCAAGTTACTTCCTCAGATAGAAATGAAGGTGAAGAAAGCCTATGT 899
Query 900 GCTACAACAACAAAGTCTTCTTCGAACAAGCTTCGTGCAAGAAAGCGGAAGCTTGAGATG 959
|||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 900 GCTACAACAATAAAGTCTTCTTCGAACAAGCTTCATGCAAGAAAGCGGAAGCTGGAGATG 959
Query 960 CACTTGAAAAGGTCGAGTTTTGATCCAGAGGAATATGAATTATACAAACGGTATCAACTC 1019
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 960 CACTTGAAAAGGTCGAGTTTTGAACCAGAGGAATATGAATTATACAAACGGTATCAAATG 1019
Query 1020 AAAGTGCATAATGATAAGCCGGAGAGCATCTCAGAAACTTCATACAAAAGGTTTTTGGTT 1079
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1020 AAAGTGCATAATGATAAGCCGGAGAGCATCTCAGAAACTTCATACAAACGGTTTTTGGTA 1079
Query 1080 GACACTCCGCTCATTGAAGTTCCGCCTTCAGGTTATGATGACGAAGAAAAGCTTCCTCCT 1139
||||||||||||| ||||||||| |||||||||||||||| ||||||||| |||||| |
Sbjct 1080 GACACTCCGCTCACTGAAGTTCCTTCTTCAGGTTATGATGATGAAGAAAAGATTCCTCTT 1139
Query 1140 TGTGGCTTTGGTTCTTTCCATCAACAATACCGAGTTGATGACCGTCTAATTGCTGTGGGG 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1140 TGTGGCTTTGGTTCTTTCCATCAACAATACCGAGTTGATGACCGTCTAATTGCTGTTGGG 1199
Query 1200 GTGATTGACATTCTTCCTAATTGTTTATCGAGTAAATATCTATTCTGGGATCCGGATTTC 1259
|||||||| ||||||||||| ||||| || |||||||| || ||||||||||||||||||
Sbjct 1200 GTGATTGATATTCTTCCTAAATGTTTGTCTAGTAAATACCTGTTCTGGGATCCGGATTTC 1259
Query 1260 GCATCCTTGTCTCTTGGAAACTACTCAGCCCTGCAAGAAATCGATTGGGTAAAACAGAAC 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GCATCCTTGTCTCTTGGAAACTACTCAGCCCTGCAAGAAATCGATTGGGTAAAACAGAAC 1319
Query 1320 CAAGCTCATTGCGCTACTCTTGAGTATTACTATCTTGGCTATTACATACATTCATGCAAC 1379
|||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1320 CAAGCTCATTGCTCTACTCTTGAGTATTACTATCTTGGCTATTACATACATTCCTGTAAC 1379
Query 1380 AAGATGAGATATAAAGCAGCCTATAGTCCGTCTCAGCTTCTATGCCCTCTCCGGTACCAA 1439
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1380 AAGATGAGATATAAAGCAGCCTATCGTCCGTCTGAGCTTCTATGCCCTCTCCGGTACCAA 1439
Query 1440 TGGGTTCCATTTGAAGTAGCCAAGCCTCTGCTTGATAAAAAGCCATATTCCGTCTTGTCC 1499
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1440 TGGGTTCCATTCGAAGTAGCCAAGCCTCTGCTTGATAAAAAGCCTTATTCCGTCTTGTCC 1499
Query 1500 AATTTCACTAAGGATTCT-CTATCATCATCATCACCTCAAGCTTATGAAACCATAGTGCA 1558
||| ||| ||||| |||| | ||||||||||||||||||||||| ||||||| || || |
Sbjct 1500 AATATCAGTAAGGTTTCTTC-ATCATCATCATCACCTCAAGCTTCTGAAACCCTATTGGA 1558
Query 1559 ATCCACGAGGGAACATGAAGACATGGAACAAGGGGATACAAATGATGACGATGATGATGA 1618
||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1559 ATCTACGAGTGAACATGAAGACATGGAACAAGGGGATACAAATGATGA---TGATGATGA 1615
Query 1619 AATGTATAACTCTGATGAAGACTCAGACTC----T--AGCAG-A--A-A--CCGGAATGA 1666
|||||||||||||||||||||||||||||| | ||||| | | | ||||| |||
Sbjct 1616 AATGTATAACTCTGATGAAGACTCAGACTCAGACTCTAGCAGTAGCAGAAACCGGAGTGA 1675
Query 1667 CATTACCAATATCCTTATCAGTCTTGATGGACCTCGACTTCGATACAAGGATATACCACG 1726
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1676 CATTACCAATATCCTTATCAGTCTTAATGGACCTCGACTTCGATACAAGGATATACCGCG 1735
Query 1727 GATCAAGAATCCAGTGGTTCAGAAACAACTGGAATCGATGTTGATTAATTACAGGAAAGT 1786
| |||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||
Sbjct 1736 GTTCAAGAATCCAGTGGTTCAGAAACAACTCGAATCGATGTTGGTTAGTTACAGGAAAGT 1795
Query 1787 TGTCGGAACTGAGCTATCGGAGAGAATGGTGTATGAACTCCGGTAACATTAAGCTTAA 1844
||| || | ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1796 TGTTGGGGCCGAGCTATCGGAGATAATGGTGTATGAACTCCGGTAACATTAAGCTTAA 1853
> AT5G05700.1 | Symbols: ATE1, DLS1, ATATE1 | arginine-tRNA protein
transferase 1 | chr5:1712670-1715731 REVERSE LENGTH=2271
Length=2271
Score = 525 bits (284), Expect = 6e-148
Identities = 674/857 (79%), Gaps = 48/857 (6%)
Strand=Plus/Plus
Query 47 GAAGAACGAGGCAAGTAGTAG-C-CG-TGGTGG-CGTCGGCGGAGAGAGTGTAGTCGCTG 102
||| ||||| || |||||||| | || ||||| | | | |||| || ||| ||| ||
Sbjct 101 GAAAAACGATGCGAGTAGTAGCCACGACGGTGGAAG-CAACAGAGAAAGCGTAATCGATG 159
Query 103 ATTGTGGACGAAATAAATCCACTTGCGGTTACTGTAAATCTTCTA-CCCGCTCCAGTATC 161
|| ||| || |||| ||||||||| ||||||||||| | | | || |||||||||
Sbjct 160 ATCATGGCCGCCGTAAAAGCACTTGCGGCTACTGTAAATC-CCCAGCTCGGTCCAGTATC 218
Query 162 TCTCACGGTTTATGGACAG-AGAGACTC--ACCGTTAATGACTACCAAGCTCTTCTTGAC 218
||||||||||||| ||| | |||||| |||||| ||||||||||||||||| |||||
Sbjct 219 TCTCACGGTTTAT---CAGCACAGACTCTTACCGTTTATGACTACCAAGCTCTTATTGAC 275
Query 219 CGTGGATGGAGACGGTCTGGCTGCTT-TCTTTACAAACCTGAGATGGATAAAACTTGTTG 277
|| || |||||| | ||||| | ||| ||||||||||| ||||||||||||||| |||||
Sbjct 276 CGAGGCTGGAGAAGATCTGG-TACTTATCTTTACAAACATGAGATGGATAAAACGTGTTG 334
Query 278 CCCTTCTTATACAATCCGCTTGAAAGCAAGTGATTTTGTTCCTTCTAAGGAACAGCAGCG 337
|||| ||||||| || || |||||||||||||||||||||||| |||| || ||||||||
Sbjct 335 CCCTCCTTATACGATACGTTTGAAAGCAAGTGATTTTGTTCCTACTAAAGAGCAGCAGCG 394
Query 338 AG-TGCGTAGAAGACTAGAAAGGTTCTTGGATGGCGAACTAGATGCGAAGCCGAGTGAGC 396
|| | | |||||||||||||||||||||||||||| ||||||||| | |||| || || |
Sbjct 395 AGTTTC-TAGAAGACTAGAAAGGTTCTTGGATGGCAAACTAGATGTGCAGCCCAGGGAAC 453
Query 397 AGACAGAATATCAAGACATTTCTTTCTCCCGCGAAGTTTCAG-TGTCT-GTGAGAAAATC 454
| | ||| | | | || ||| ||| | || ||||||| | | | ||||||| |
Sbjct 454 A-A-AGAGG-T---G-C-TT-CTTCCTCTGGTGATGTTTCAGATA-CAAG-GAGAAAAAC 502
Query 455 ACTTGGAGCTGCTAAGAGAGAACAAAACAATGAA-GTGGAACCAATCATGAAACATCTGT 513
||||||||||||||| || ||| | || || ||| || ||| || | ||| | || |||
Sbjct 503 ACTTGGAGCTGCTAAAAGTGAAGAGAATAA-GAAAGTTGAAGCAGTTATGGATGATTTGT 561
Query 514 CTGAACAA-ATTGAT-AATGCGGTACAAAGATGCATACAAAGTGGTGAATTTCCTTCTAA 571
|| || || ||||| || || || ||| |||||||| ||||| ||||| || |||||
Sbjct 562 CTAAA-AATATTGACCAA-GCTGTGCAATTATGCATACGGAGTGGGGAATTCCCGTCTAA 619
Query 572 TATCCAGATTCCCAAAGCTTCAGTAAAGAAAGTTCTCTCTGCTAAAAGGAAGAAACTAGC 631
||| ||||| || ||||||||||| ||||| ||| ||| ||||| ||| |||||||||||
Sbjct 620 TATGCAGATACCAAAAGCTTCAGTGAAGAAGGTTTTCTGTGCTAGAAGAAAGAAACTAGC 679
Query 632 TGAAGGGCCAGAAGAACTCTTATACACCAGCAACATTTCTTTTCCAATAGTAGCTGCTAT 691
|||||| ||||| || |||||||||||||||||||| |||||||||||| |||||| ||
Sbjct 680 TGAAGGAACAGAACAAATCTTATACACCAGCAACATTGCTTTTCCAATAGCAGCTGCAAT 739
Query 692 AAAACGCA-C-AGACACATCTGAGAAAG-GC--A-AAA-ACGT--AGAAGAAAACAGATT 742
|||||||| | ||||| |||||||||| | | ||| | || ||||| ||| |||||
Sbjct 740 AAAACGCATCCAGACA--TCTGAGAAAGAGGGGATAAATA-GTGCAGAAGGAAATAGATT 796
Query 743 ATCACCAGAGGCTGTTTCTGAGAAGTTGTTAATTGCAATGAATAAGGTAGAAGAGTTTAC 802
|||||| || || ||||||||| |||||| | ||||||| ||||||| | || | |
Sbjct 797 ATCACCTGAAACTATTTCTGAGATGTTGTTGAGTGCAATGCATAAGGTGGGGGAAACTCC 856
Query 803 TGGTTTTTCTGTTAAGGTCTCCAAGGGCCATATCAACTTCCTTTCAGCTACCGGAGTTTC 862
|| | | ||| | || |||| |||||||||||||| ||||||||| || || || |||
Sbjct 857 TGATGTGTCTATCAAAGTCTGTAAGGGCCATATCAATTTCCTTTCATCTGCCAAAGATTC 916
Query 863 TTCCTCAGATAGAAATG 879
|| || |||||| |||
Sbjct 917 TTTTTCTGATAGAGATG 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93925219695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5