BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478465
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11250.1 | Symbols: | Ribosomal protein L10 family protein ... 1570 0.0
AT3G09200.1 | Symbols: | Ribosomal protein L10 family protein ... 1199 0.0
> AT3G11250.1 | Symbols: | Ribosomal protein L10 family protein
| chr3:3521357-3523001 FORWARD LENGTH=1243
Length=1243
Score = 1570 bits (850), Expect = 0.0
Identities = 948/996 (95%), Gaps = 3/996 (0%)
Strand=Plus/Plus
Query 75 CAACAATGGTGAAGGCAACGAAAGCAGAGAAGAAGATCGCTTATGACACAAAACTATGTC 134
||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 92 CAACAATGGTGAAGGCAACAAAAGCAGAGAAGAAGATAGCGTATGACACAAAACTATGTC 151
Query 135 AGCTTATCGACGAATACACTCAGATCTTAGTCGTTGCGGCGGATAACGTCGGATCTACTC 194
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 152 AGCTTATCGACGAATACACTCAGATCTTAGTCGTTGCGGCGGACAACGTCGGATCGACTC 211
Query 195 AGCTTCAGAACATCAGGAAGGGTCTCCGTGGAGACTCAGTGGTTCTCATGGGTAAGAACA 254
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 212 AGCTTCAGAACATCAGGAAAGGTCTTCGTGGAGACTCAGTGGTTCTCATGGGTAAGAACA 271
Query 255 CTATGATGAAACGTTCCGTTAGAATCCACTCCGAGAACACTGGAAACACTGCGATTTTGA 314
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 272 CTATGATGAAACGTTCCGTTAGAATCCACTCCGAGAACTCTGGAAACACTGCAATTTTGA 331
Query 315 ATCTCCTTCCTCTCCTTCAGGGAAATGTTGGTTTGATCTTCACTAAAGGTGATCTCAAGG 374
|||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 332 ATCTGCTTCCCCTCCTTCAGGGAAACGTTGGTTTGATCTTCACTAAAGGTGATCTCAAGG 391
Query 375 AAGTGAGCGAGGAGGTTGCCAAATACAAGGTTGGTGCTCCTGCTCGTGTGGGTTTAGTTG 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 AAGTGAGCGAGGAGGTTGCCAAATACAAGGTTGGTGCTCCTGCTCGTGTGGGTTTAGTTG 451
Query 435 CTCCAATTGATGTGGTTGTTCAGCCTGGCAACACTGGTCTCGACCCATCTCAAACATCTT 494
|||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 452 CTCCTATTGATGTGGTTGTTCAACCTGGCAACACTGGTCTTGACCCATCTCAAACATCGT 511
Query 495 TCTTCCAGGTGCTTAATAT-CCCAACTAAGATTAACAAGGGTACTGTTGAAATTATCACC 553
|||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||
Sbjct 512 TCTTCCAGGTGCTTAACATTCCCA-CTAAGATTAACAAGGGTACTGTTGAAATTATCACC 570
Query 554 CCTGTGGAGCTTATCAAGCAAGGTGACAAGGTTGGGTCTTCTGAGGCTGCCCTTCTAGCT 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 CCTGTGGAGCTTATCAAGCAAGGTGACAAGGTTGGGTCTTCTGAGGCTGCCCTTCTAGCT 630
Query 614 AAGCTCGGCATTAGGCCTTTCTCGTATGGTCTAGTTGTTCAGTCGGTTTATGACAACGGC 673
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 631 AAGCTTGGCATTAGGCCTTTCTCGTATGGTCTAGTTGTTCAGTCGGTTTATGATAATGGA 690
Query 674 TCAGTCTTTAGCCCAGAGGTTCTTGATCTTACAGAAGATCAACTTGTGGAGAAGTTTGCT 733
|||||||| || |||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 691 TCAGTCTTCAGTCCAGAGGTTCTTGATCTTACTGAAGATCAACTTGTTGAAAAGTTTGCT 750
Query 734 TCTGGTATCTCCATGGTCACTTCCTTGGCTCTAGCTGTCTCTTACCCCACTCTTGCTGCT 793
||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| |||
Sbjct 751 TCTGGTATCTCTATGGTCACTTCCTTGGCTCTAGCTGTTTCTTACCCTACCCTTGCGGCT 810
Query 794 GCGCCGCATATGTTCATCAATGCATACAAGAATGCCTTAGCTATTGCTGTTGCCACTGAC 853
|| |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 811 GCACCGCATATGTTCATCAATGCCTACAAGAATGCTTTAGCTATTGCTGTTGCTACTGAC 870
Query 854 TACACTTTCCCTCAAGCAGAGAAGGTTAAGGAATTCTTAAAGGATCCTAGCAAGTTTGTT 913
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 871 TACACTTTCCCTCAAGCAGAGAAGGTCAAGGAATTCTTAAAGGATCCCAGCAAGTTTGTT 930
Query 914 GTTGCTGCAGCGGCAGTGTCAGCGGATGCAGGTGGCAGTGGTGCTCAAGCTGGAGCTGCT 973
|||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 931 GTTGCTGCAGCGGCAGTGTCTGCGGATGCAGGTGGTGGTAGTGCTCAAGCTGGAGCTGCA 990
Query 974 GCTAAGGTGGAGGAGAAGAAAGAAGAATCAGACGAAGAAGACTATGAGGGTGGTTTCGGT 1033
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 GCTAAGGTAGAGGAGAAGAAAGAAGAATCAGACGAAGAAGACTATGAGGGTGGTTTCGGT 1050
Query 1034 TTGTTCGACGAAGAGTAGGTGTTGTCTATAAGTGTT 1069
||||| |||||||||||||| ||||||||||| |||
Sbjct 1051 TTGTTTGACGAAGAGTAGGTTTTGTCTATAAG-GTT 1085
Score = 75.0 bits (40), Expect = 2e-12
Identities = 64/74 (86%), Gaps = 8/74 (11%)
Strand=Plus/Plus
Query 1 AAAACCCTAGCCTCCTTCATCATCTTTCCCAATTTGTCGAACACTCTCCGAAACAGAGAA 60
||||||||| | |||||||||||||||||| | |||||||||||||||||||||
Sbjct 4 AAAACCCTAACTTCCTTCATCATCTTTCCC-A-------AACACTCTCCGAAACAGAGAA 55
Query 61 CATTTTGAGTTTTT 74
||||||||||||||
Sbjct 56 CATTTTGAGTTTTT 69
> AT3G09200.1 | Symbols: | Ribosomal protein L10 family protein
| chr3:2823090-2825114 REVERSE LENGTH=1331
Length=1331
Score = 1199 bits (649), Expect = 0.0
Identities = 876/985 (89%), Gaps = 17/985 (2%)
Strand=Plus/Plus
Query 79 AATGGTGAAGGCAACGAAAGCAGAGAAGAAGATCGCTTATGACACAAAACTATGTCAGCT 138
||||||||| ||||| || ||||||||||||||||| || || || || |||||||||||
Sbjct 94 AATGGTGAAAGCAACTAAGGCAGAGAAGAAGATCGCCTACGATACCAAGCTATGTCAGCT 153
Query 139 TATCGACGAATACACTCAGATCTTAGTCGTTGCGGCGGATAACGTCGGATCTACTCAGCT 198
|||||| || ||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 154 TATCGATGAGTACACCCAGATCTTGGTCGTTGCGGCCGATAACGTCGGATCAACTCAGCT 213
Query 199 TCAGAACATCAGGAAGGGTCTCCGTGGAGACTCAGTGGTTCTCATGGGTAAGAACACTAT 258
|||||||||||| |||||||| ||||||||||| || || || ||||| |||||||||||
Sbjct 214 TCAGAACATCAGAAAGGGTCTTCGTGGAGACTCCGTCGTGCTTATGGGGAAGAACACTAT 273
Query 259 GATGAAACGTTCCGTTAGAATCCACTCCGAGAACACTGGAAACACTGCGATTTTGAATCT 318
|||||| ||||||||||| || ||||| |||||||| ||||||||||| || |||||||
Sbjct 274 GATGAAGCGTTCCGTTAGGATTCACTCTGAGAACACCGGAAACACTGCAATCCTGAATCT 333
Query 319 CCTTCCTCTCCTTCAGGGAAATGTTGGTTTGATCTTCACTAAAGGTGATCTCAAGGAAGT 378
|||||||||||||||||||| |||||||||||||| || |||||||| |||||||||||
Sbjct 334 GCTTCCTCTCCTTCAGGGAAACGTTGGTTTGATCTTTACCAAAGGTGACCTCAAGGAAGT 393
Query 379 GAGCGAGGAGGTTGCCAAATACAAGGTTGGTGCTCCTGCTCGTGTGGGTTTAGTTGCTCC 438
||||||||||||||| || |||||||||||||| ||||||||||||||||| || |||||
Sbjct 394 GAGCGAGGAGGTTGCTAAGTACAAGGTTGGTGCCCCTGCTCGTGTGGGTTTGGTGGCTCC 453
Query 439 AATTGATGTGGTTGTTCAGCCTGGCAACACTGGTCTCGACCCATCTCAAACATCTTTCTT 498
||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 454 AATTGATGTGGTTGTCCAACCTGGCAACACTGGTCTCGACCCATCCCAAACATCTTTCTT 513
Query 499 CCAGGTGCTTAATATCCCAACTAAGATTAACAAGGGTACTGTTGAAATTATCACCCCTGT 558
|||||||||||| |||||||| ||||||||||||||||| || ||||| |||||||| ||
Sbjct 514 CCAGGTGCTTAACATCCCAACCAAGATTAACAAGGGTACCGTCGAAATCATCACCCCAGT 573
Query 559 GGAGCTTATCAAGCAAGGTGACAAGGTTGGGTCTTCTGAGGCTGCCCTTCTAGCTAAGCT 618
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 574 TGAGCTTATCAAGCAAGGTGACAAGGTCGGGTCTTCTGAGGCTGCGCTTCTAGCCAAGCT 633
Query 619 CGGCATTAGGCCTTTCTCGTATGGTCTAGTTGTTCAGTCGGTTTATGACAACGGCTCAGT 678
||||| ||||| ||||| |||||||| ||||| ||||| || |||||||| ||||||||
Sbjct 634 TGGCATCAGGCCGTTCTCATATGGTCTTGTTGTCCAGTCTGTCTATGACAATGGCTCAGT 693
Query 679 CTTTAGCCCAGAGGTTCTTGATCTTACAGAAGATCAACTTGTGGAGAAGTTTGCTTCTGG 738
||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 694 CTTCAGCCCAGAGGTTCTTGATCTTACTGAAGACCAACTTGTGGAGAAGTTTGCTTCTGG 753
Query 739 TATCTCCATGGTCACTTCCTTGGCTCTAGCTGTCTCTTACCCCACTCTTGCTGCTGCGCC 798
||||||||||||||||||||||||||| ||||| || ||||| || ||||||||||| ||
Sbjct 754 TATCTCCATGGTCACTTCCTTGGCTCTTGCTGTGTCGTACCCTACCCTTGCTGCTGCACC 813
Query 799 GCATATGTTCATCAATGCATACAAGAATGCCTTAGCTATTGCTGTTGCCACTGACTACAC 858
|||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 814 GCATATGTTCATCAATGCGTACAAGAATGCCTTGGCTATTGCTGTTGCCACTGAGTACAC 873
Query 859 TTTCCCTCAAGCAGAGAAGGTTAAGGAATTCTTAAAGGATCCTAGCAAGTTTGTTGTTGC 918
|||||||||||||||||||| ||||||| ||| |||||||| |||||||||| ||||||
Sbjct 874 CTTCCCTCAAGCAGAGAAGGTCAAGGAATACTTGAAGGATCCAAGCAAGTTTGCTGTTGC 933
Query 919 TGCAGC-G--GCAGTGTCAGCGGATGCAGGTGGCAGTGGTGCTCAAGCTGGAGCTGCTGC 975
| ||| | || ||||| || ||||||||||| |||||| | | |||||||||
Sbjct 934 TTCAGTAGCTGCGGTGTCTGCTGATGCAGGTGG---TGGTGCCC---C---AGCTGCTGC 984
Query 976 TAAGGTGGAGGAGAAGAAAGAAGAATCAGACGAAGAAGACTATG-AGGGTGGTTTCGGTT 1034
|||||| ||||||||| |||| | || |||||||||||||||| ||| || ||||||||
Sbjct 985 TAAGGTAGAGGAGAAGGAAGA-G--TCCGACGAAGAAGACTATGGAGG-TGATTTCGGTT 1040
Query 1035 TGTTCGACGAAGAGTAGGTGTTGTC 1059
||||||| ||||||||| | |||||
Sbjct 1041 TGTTCGATGAAGAGTAGATTTTGTC 1065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57027819120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5