BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478466
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11260.1 | Symbols: WOX5 | WUSCHEL related homeobox 5 | chr3... 872 0.0
> AT3G11260.1 | Symbols: WOX5 | WUSCHEL related homeobox 5 | chr3:3527575-3528433
FORWARD LENGTH=750
Length=750
Score = 872 bits (472), Expect = 0.0
Identities = 561/602 (93%), Gaps = 14/602 (2%)
Strand=Plus/Plus
Query 1 AAACAGTTTAGGAGTTTATATCTGAAAATGTCTTTCTCCATGAAAGGTCGAAGCTTACGT 60
|||||||| |||| |||| ||||||| |||||||||||| ||||||||||||||||||||
Sbjct 5 AAACAGTTGAGGACTTTACATCTGAACATGTCTTTCTCCGTGAAAGGTCGAAGCTTACGT 64
Query 61 GGCAACAACAACGGAGGAGGAGGAGGGACGGGGACAAAGTGCGGGAGATGGAATCCTACG 120
|||||||| ||| |||||| |||||||| |||||||||||||||||||| |||
Sbjct 65 GGCAACAATAAC------GGAGGA---ACGGGGACGAAGTGCGGGAGATGGAATCCAACG 115
Query 121 GTGGAGCAGTTGAAGATATTGACTGATCTATTTCGAGCTGGTCTTAGAACTCCGACCACT 180
||||||||||||||||||||||||||||| |||||||| |||||||||||||| || |||
Sbjct 116 GTGGAGCAGTTGAAGATATTGACTGATCTGTTTCGAGCCGGTCTTAGAACTCCAACAACT 175
Query 181 GATCAGATTCAGAAGATCTCTACGGAGCTCAGTTTCTACGGCAAGATCGAGAGCAAGAAC 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 176 GATCAGATTCAGAAGATCTCTACGGAGCTCAGTTTCTACGGCAAGATAGAGAGCAAGAAT 235
Query 241 GTTTTCTATTGGTTCCAGAATCATAAGGCTAGGGAGAGGCAGAAACGTCGTAAAATCTCC 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 GTTTTCTATTGGTTTCAGAATCATAAGGCTAGGGAGAGGCAGAAACGTCGTAAAATCTCC 295
Query 301 ATTGATTTTGATCACCATCATCATCAACCATCAACTAGAGATGTTTTTGAAATAAGCGAA 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 ATTGATTTTGATCATCATCATCATCAACCATCAACTAGAGATGTTTTTGAAATAAGCGAA 355
Query 361 GAAGATTGTCAAGAGGACGAGAAGGTGATAGAGACATTGCAACTCTTTCCGGTGAATTCA 420
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 356 GAAGATTGTCAAGAGGAAGAGAAGGTGATAGAGACATTACAACTCTTTCCGGTGAATTCA 415
Query 421 TTTGAAGACTCTAACTCCAAGGTGGAGAAAATGAGAGCTAGAAGCAATAATCAGTACCGT 480
||||||||||| |||||||||||||| ||||||||||||||| ||||||| |||||||||
Sbjct 416 TTTGAAGACTCCAACTCCAAGGTGGACAAAATGAGAGCTAGAGGCAATAACCAGTACCGT 475
Query 481 GAATATATTCGAGAGACCAACAACACAACGTCGTTTTCTCCATATTCATCATGTGGAGCT 540
||||||||||||||||||| | ||| ||||||||||||||||| |||||||||||||||
Sbjct 476 GAATATATTCGAGAGACCA-C--CACGACGTCGTTTTCTCCATACTCATCATGTGGAGCT 532
Query 541 GAGATGGAACATCCACCGCCGTTAGATCTTCGATTAAGCTTTCTTTGAATT-ATTGACCA 599
|| ||||||||||||||||| ||||||||||||||||||||||||| || | ||||||||
Sbjct 533 GAAATGGAACATCCACCGCCATTAGATCTTCGATTAAGCTTTCTTT-AAGTCATTGACCA 591
Query 600 CA 601
||
Sbjct 592 CA 593
Score = 71.3 bits (38), Expect = 1e-11
Identities = 56/64 (88%), Gaps = 4/64 (6%)
Strand=Plus/Plus
Query 602 TCCAATGCATGAG-TTATGACATAGTAT-TTTCATTTTGTTTGATATAAGAATCTATGTT 659
||||||||||| | |||| | | ||| | | |||||||||||||||||||||||||||||
Sbjct 689 TCCAATGCATG-GTTTATCAAAAAGT-TGTCTCATTTTGTTTGATATAAGAATCTATGTT 746
Query 660 ATGG 663
||||
Sbjct 747 ATGG 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32049385786
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5