BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478467 Length=1105 Score E Sequences producing significant alignments: (Bits) Value AT3G11270.1 | Symbols: MEE34 | Mov34/MPN/PAD-1 family protein |... 1653 0.0 AT5G05780.1 | Symbols: RPN8A, AE3, ATHMOV34 | RP non-ATPase sub... 1134 0.0 > AT3G11270.1 | Symbols: MEE34 | Mov34/MPN/PAD-1 family protein | chr3:3528890-3531724 FORWARD LENGTH=1439 Length=1439 Score = 1653 bits (895), Expect = 0.0 Identities = 1060/1134 (93%), Gaps = 33/1134 (3%) Strand=Plus/Plus Query 1 AAAACGGAATCGGAAGTTGAGGTTTTGATCATTCCC-G-G--AGAAATTT---TTTGAGT 53 ||||||||||| ||||||||||||||||||||||| | | |||||||| || | | Sbjct 17 AAAACGGAATCAAAAGTTGAGGTTTTGATCATTCCCGGAGAAAGAAATTTAGAATT-ACT 75 Query 54 --AGCGAATTTGATTCACCGAACAATGGATGTTATAAAGACGCAACAAATATCGGCAAGG 111 ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 76 CAAGCGAATTTGATTAACCCAACAATGGATGTTATAAAGACGCAACAAATATCGGCAAGG 135 Query 112 ACGATAGAGAAAGTGATCGTTCACCCACTTGTCTTGCTTAGTATCGTCGACCATTACAAT 171 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 136 ACAATCGAGAAAGTGATCGTTCACCCACTTGTCTTGCTTAGTATCGTCGACCATTACAAT 195 Query 172 CGTGTAGCCAAGGATAC-ACGCAAGCGCGTCGTCGGCGTTTTGCTCGGAAACAGCTGC-C 229 |||||||||||||| || | |||||||||||||||||||||||||||||| |||| | | Sbjct 196 CGTGTAGCCAAGGACACGA-GCAAGCGCGTCGTCGGCGTTTTGCTCGGAAGTAGCT-CTC 253 Query 230 GTGGTACTGTCGACGTCACCAACAGCTACGCAGTGCCTTTTGAGGAGGATGACAAAGACA 289 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 254 GTGGTACTGTTGACGTCACCAACAGCTACGCAGTGCCTTTTGAGGAGGATGACAAAGACA 313 Query 290 CAAGCATCTGGTTTCTTGATCACAACTACCACGAGTCGATGTTTCACATGTTCAAGAGAA 349 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 314 CAAGCATATGGTTTCTTGATCACAACTACCACGAGTCGATGTTTCACATGTTCAAGAGAA 373 Query 350 TTAATGCTAAGGAGCATATTGTGGGTTGGTACAGAACAGGTCCTAAACTTCGAGAGAATG 409 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 374 TTAATGCTAAGGAGCATATTGTGGGTTGGTACAGCACAGGTCCTAAACTTCGAGAGAATG 433 Query 410 ATTTGGATGTTCACGCTTTATTCAATGGCTACGTTCCAAATCCAGTGTTGGTCATTATTG 469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 434 ATTTGGATGTTCACGCTTTATTCAATGGCTACGTTCCAAATCCAGTGTTGGTCATTATTG 493 Query 470 ATGTCCAACCTAAAGAACTTGGAATCCCTACAAAAGCATACTATGCTGTTGAGGAGGTGA 529 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 494 ATGTCCAACCTAAAGAACTTGGAATCCCCACAAAAGCATACTATGCGGTTGAGGAGGTGA 553 Query 530 AGGAGAATGCTACCCAGAAAAGCCAGCAGGTGTTTGTACACGTGCCTACAGAAATTGCGG 589 | ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| | Sbjct 554 AAGAGAATGCTACCCAGAAAAGCCAACAGGTTTTTGTACACGTGCCTACAGAAATTGCAG 613 Query 590 CTCACGAAGTCGAGGAAATTGGTGTGGAACATTTGCTCAGGGATGTAAAAGACACAACCA 649 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 614 CTCATGAAGTTGAGGAAATTGGTGTGGAACATTTGCTCAGGGATGTAAAAGACACAACCA 673 Query 650 TCAGTACCTTGGCAACTGAGGTCACGGCGAAACTTACTGCTCTGAAGGGATTGGATGCAC 709 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 674 TCAGTACCTTGGCAACTGAGGTCACTGCGAAACTTACTGCTCTGAAGGGATTGGATGCAC 733 Query 710 GACTTCGGGAGATCAGGAGTTACCTTGACCTTGTAATCGAAGGAAAACTCCCATTAAACC 769 |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 734 GACTTCGGGAGATCCGGACTTACCTTGACCTTGTAATCGAAGGAAAACTCCCATTAAACC 793 Query 770 ATGAAATCTTGTACCATCTTCAGGACGTATTCAACTTGCTTCCTAACTTGAACGTCAACG 829 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 794 ATGAAATCTTATACCATCTTCAGGACGTATTCAACTTGCTTCCTAACTTGAACGTCAACG 853 Query 830 AATTGGTTAAGGCCTTTGCAGTGAAAACAAATGACATGATGCTCGTAATCTACCTATCGT 889 | |||||||| ||||||||||| |||||||||||||||||||||||||||||||| || | Sbjct 854 AGTTGGTTAAAGCCTTTGCAGTAAAAACAAATGACATGATGCTCGTAATCTACCTTTCTT 913 Query 890 CGCTTATCCGAAGTGTAATCGCCCTCCACAATTTGATCAACAACAAGTTATTGAACAAGG 949 |||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||| Sbjct 914 CGCTTATCCGAAGTGTAATCGCCCTCCACAGTTTGATCAACAACAAGTTGTTGAATAAGG 973 Query 950 AACATGAAAAAGCAGAGGACTCAAAGCCTGTTGCCATACC-TGCAATCACTGGGAGTTAA 1008 ||||||||||||||||||||||||||||||||| |||||| | |||||||| ||||||| Sbjct 974 AACATGAAAAAGCAGAGGACTCAAAGCCTGTTGACATACCCTT-AATCACTGAGAGTTAA 1032 Query 1009 ATGTAGCCAAATTTCGAG-T-----AA--T-T------GGATGTTACT--GTCATTTCCT 1051 ||| |||||||||||||| | || | | |||||||||| ||||||| || Sbjct 1033 ATGCAGCCAAATTTCGAGCTTTGGGAAGATATTTAATCGGATGTTACTCTGTCATTTGCT 1092 Query 1052 GCATGTCAAGAGGGTCTGTTGGGGAACAAAACGGGTTTGGTCTCGTTCCGATGA 1105 |||||| |||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1093 GCATGTGAAGAGGGTCTGTAGGGGAACAAAACGGGTTTGGTCTCGTTCCGATGA 1146 > AT5G05780.1 | Symbols: RPN8A, AE3, ATHMOV34 | RP non-ATPase subunit 8A | chr5:1735730-1738492 FORWARD LENGTH=1375 Length=1375 Score = 1134 bits (614), Expect = 0.0 Identities = 831/937 (89%), Gaps = 10/937 (1%) Strand=Plus/Plus Query 61 TTGATTCACCGAACAATGGATGTTATAAAGACGCAACAAATATCGGCAAGGACGATAGAG 120 ||||||| | |||||||||||| || ||||||||||| || || ||||||||||| ||| Sbjct 118 TTGATTCTTCAAACAATGGATGTGATTAAGACGCAACAGATTTCAGCAAGGACGATCGAG 177 Query 121 AAAGTGATCGTTCACCCACTTGTCTTGCTTAGTATCGTCGACCATTACAATCGTGTAGCC 180 |||||| | ||||| ||||| |||||||||||||||||||||||||||||||| || || Sbjct 178 AAAGTGGTTGTTCATCCACTAGTCTTGCTTAGTATCGTCGACCATTACAATCGCGTCGCT 237 Query 181 AAGGATACACGCAAGCGCGTCGTCGGCGTT-TTGCTCGGAAACAGCTGC-CGTGGTACTG 238 |||||| || ||||||| |||||||| ||| || || || | ||||| | |||||| || Sbjct 238 AAGGATTCAAGCAAGCGTGTCGTCGGTGTTCTT-CTGGGGAGCAGCT-CTCGTGGTGTTG 295 Query 239 TCGACGTCACCAACAGCTACGCAGTGCCTTTTGAGGAGGATGACAAAGACACAAGCATCT 298 | || |||||||||||||| |||||||| ||||||||||||||||||||| ||||||||| Sbjct 296 TTGATGTCACCAACAGCTATGCAGTGCCCTTTGAGGAGGATGACAAAGACCCAAGCATCT 355 Query 299 GGTTTCTTGATCACAACTACCACGAGTCGATGTTTCACATGTTCAAGAGAATTAATGCTA 358 |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| | Sbjct 356 GGTTTCTTGATCACAACTACCATGAGTCAATGTTCCACATGTTCAAGAGAATTAATGCCA 415 Query 359 AGGAGCATATTGTGGGTTGGTACAGAACAGGTCCTAAACTTCGAGAGAATGATTTGGATG 418 |||||||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 416 AGGAGCATGTTGTAGGTTGGTACAGCACAGGCCCTAAACTTCGAGAGAATGATTTGGATG 475 Query 419 TTCACGCTTTATTCAATGGCTACGTTCCAAATCCAGTGTTGGTCATTATTGATGTCCAAC 478 ||||||| || ||||||||||| |||||||||||||| ||||||||||||||||||| | Sbjct 476 TTCACGCGTTGTTCAATGGCTATGTTCCAAATCCAGTCCTGGTCATTATTGATGTCCAGC 535 Query 479 CTAAAGAACTTGGAATCCCTACAAAAGCATACTATGCTGTTGAGGAGGTGAAGGAGAATG 538 |||||||||||||||||||||| |||||||||||||| || |||||||| |||||||||| Sbjct 536 CTAAAGAACTTGGAATCCCTACCAAAGCATACTATGCAGTGGAGGAGGTTAAGGAGAATG 595 Query 539 CTACCCAGAAAAGCCAGCAGGTGTTT-GTACACGTGCCTACAGAAATTGCGGCTCACGAA 597 |||| |||||||||||| | || ||| || || ||| ||||||||||||| ||||| ||| Sbjct 596 CTACTCAGAAAAGCCAGAAAGT-TTTCGTTCATGTGTCTACAGAAATTGCTGCTCATGAA 654 Query 598 GTCGAGGAAATTGGTGTGGAACATTTGCTCAGGGATGTAAAAGACACAACCATCAGTACC 657 || |||||||| || ||||| ||||||||||||||||| ||||||||||| ||||||||| Sbjct 655 GTTGAGGAAATCGGCGTGGAGCATTTGCTCAGGGATGTGAAAGACACAACAATCAGTACC 714 Query 658 TTGGCAACTGAGGTCACGGCGAAACTTACTGCTCTGAAGGGATTGGATGCACGACTTCGG 717 | || ||||||||||| || |||||||||||| ||||||| ||||||||||| |||||| Sbjct 715 CTCGCGACTGAGGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGG 774 Query 718 GAGATCAGGAGTTACCTTGACCTTGTAATCGAAGGAAAACTCCCAT-TAAACCATGAAAT 776 |||||| ||||||| ||||||||||||||||||||||| ||||| | |||||||||| || Sbjct 775 GAGATCCGGAGTTATCTTGACCTTGTAATCGAAGGAAAGCTCCC-TCTAAACCATGAGAT 833 Query 777 CTTGTACCATCTTCAGGACGTATTCAACTTGCTTCCTAACTTGAACGTCAACGAATTGGT 836 || |||||||| |||||||| |||||||||||||||||| |||| || ||||| ||||| Sbjct 834 TTTATACCATCTACAGGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGT 893 Query 837 TAAGGCCTT-TGCAGTGAAAACAAATGACATGATGCTCGTAATCTACCTATCGTCGCTTA 895 |||||||| | | |||||||||||||||||||||||||| ||||| ||||| || || | Sbjct 894 CAAGGCCTTCT-CCGTGAAAACAAATGACATGATGCTCGTTATCTATCTATCATCCCTCA 952 Query 896 TCCGAAGTGTAATCGCCCTCCACAATTTGATCAACAACAAGTTATTGAACAAGGAACATG 955 | || |||||||| || |||||||| |||||||||||||||||| ||||||||||||||| Sbjct 953 TTCGGAGTGTAATTGCGCTCCACAACTTGATCAACAACAAGTTACTGAACAAGGAACATG 1012 Query 956 AAAAAGCAGAGGACTCAAAGCCTGTTGCCATACCTGC 992 ||||||||||||||||||||||||| ||||||||||| Sbjct 1013 AAAAAGCAGAGGACTCAAAGCCTGTGGCCATACCTGC 1049 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54166388055 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5