BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478467
Length=1105
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11270.1 | Symbols: MEE34 | Mov34/MPN/PAD-1 family protein |... 1653 0.0
AT5G05780.1 | Symbols: RPN8A, AE3, ATHMOV34 | RP non-ATPase sub... 1134 0.0
> AT3G11270.1 | Symbols: MEE34 | Mov34/MPN/PAD-1 family protein
| chr3:3528890-3531724 FORWARD LENGTH=1439
Length=1439
Score = 1653 bits (895), Expect = 0.0
Identities = 1060/1134 (93%), Gaps = 33/1134 (3%)
Strand=Plus/Plus
Query 1 AAAACGGAATCGGAAGTTGAGGTTTTGATCATTCCC-G-G--AGAAATTT---TTTGAGT 53
||||||||||| ||||||||||||||||||||||| | | |||||||| || | |
Sbjct 17 AAAACGGAATCAAAAGTTGAGGTTTTGATCATTCCCGGAGAAAGAAATTTAGAATT-ACT 75
Query 54 --AGCGAATTTGATTCACCGAACAATGGATGTTATAAAGACGCAACAAATATCGGCAAGG 111
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 76 CAAGCGAATTTGATTAACCCAACAATGGATGTTATAAAGACGCAACAAATATCGGCAAGG 135
Query 112 ACGATAGAGAAAGTGATCGTTCACCCACTTGTCTTGCTTAGTATCGTCGACCATTACAAT 171
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 ACAATCGAGAAAGTGATCGTTCACCCACTTGTCTTGCTTAGTATCGTCGACCATTACAAT 195
Query 172 CGTGTAGCCAAGGATAC-ACGCAAGCGCGTCGTCGGCGTTTTGCTCGGAAACAGCTGC-C 229
|||||||||||||| || | |||||||||||||||||||||||||||||| |||| | |
Sbjct 196 CGTGTAGCCAAGGACACGA-GCAAGCGCGTCGTCGGCGTTTTGCTCGGAAGTAGCT-CTC 253
Query 230 GTGGTACTGTCGACGTCACCAACAGCTACGCAGTGCCTTTTGAGGAGGATGACAAAGACA 289
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 GTGGTACTGTTGACGTCACCAACAGCTACGCAGTGCCTTTTGAGGAGGATGACAAAGACA 313
Query 290 CAAGCATCTGGTTTCTTGATCACAACTACCACGAGTCGATGTTTCACATGTTCAAGAGAA 349
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 CAAGCATATGGTTTCTTGATCACAACTACCACGAGTCGATGTTTCACATGTTCAAGAGAA 373
Query 350 TTAATGCTAAGGAGCATATTGTGGGTTGGTACAGAACAGGTCCTAAACTTCGAGAGAATG 409
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 374 TTAATGCTAAGGAGCATATTGTGGGTTGGTACAGCACAGGTCCTAAACTTCGAGAGAATG 433
Query 410 ATTTGGATGTTCACGCTTTATTCAATGGCTACGTTCCAAATCCAGTGTTGGTCATTATTG 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 ATTTGGATGTTCACGCTTTATTCAATGGCTACGTTCCAAATCCAGTGTTGGTCATTATTG 493
Query 470 ATGTCCAACCTAAAGAACTTGGAATCCCTACAAAAGCATACTATGCTGTTGAGGAGGTGA 529
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 494 ATGTCCAACCTAAAGAACTTGGAATCCCCACAAAAGCATACTATGCGGTTGAGGAGGTGA 553
Query 530 AGGAGAATGCTACCCAGAAAAGCCAGCAGGTGTTTGTACACGTGCCTACAGAAATTGCGG 589
| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 554 AAGAGAATGCTACCCAGAAAAGCCAACAGGTTTTTGTACACGTGCCTACAGAAATTGCAG 613
Query 590 CTCACGAAGTCGAGGAAATTGGTGTGGAACATTTGCTCAGGGATGTAAAAGACACAACCA 649
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 CTCATGAAGTTGAGGAAATTGGTGTGGAACATTTGCTCAGGGATGTAAAAGACACAACCA 673
Query 650 TCAGTACCTTGGCAACTGAGGTCACGGCGAAACTTACTGCTCTGAAGGGATTGGATGCAC 709
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 674 TCAGTACCTTGGCAACTGAGGTCACTGCGAAACTTACTGCTCTGAAGGGATTGGATGCAC 733
Query 710 GACTTCGGGAGATCAGGAGTTACCTTGACCTTGTAATCGAAGGAAAACTCCCATTAAACC 769
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 734 GACTTCGGGAGATCCGGACTTACCTTGACCTTGTAATCGAAGGAAAACTCCCATTAAACC 793
Query 770 ATGAAATCTTGTACCATCTTCAGGACGTATTCAACTTGCTTCCTAACTTGAACGTCAACG 829
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 ATGAAATCTTATACCATCTTCAGGACGTATTCAACTTGCTTCCTAACTTGAACGTCAACG 853
Query 830 AATTGGTTAAGGCCTTTGCAGTGAAAACAAATGACATGATGCTCGTAATCTACCTATCGT 889
| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 854 AGTTGGTTAAAGCCTTTGCAGTAAAAACAAATGACATGATGCTCGTAATCTACCTTTCTT 913
Query 890 CGCTTATCCGAAGTGTAATCGCCCTCCACAATTTGATCAACAACAAGTTATTGAACAAGG 949
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||
Sbjct 914 CGCTTATCCGAAGTGTAATCGCCCTCCACAGTTTGATCAACAACAAGTTGTTGAATAAGG 973
Query 950 AACATGAAAAAGCAGAGGACTCAAAGCCTGTTGCCATACC-TGCAATCACTGGGAGTTAA 1008
||||||||||||||||||||||||||||||||| |||||| | |||||||| |||||||
Sbjct 974 AACATGAAAAAGCAGAGGACTCAAAGCCTGTTGACATACCCTT-AATCACTGAGAGTTAA 1032
Query 1009 ATGTAGCCAAATTTCGAG-T-----AA--T-T------GGATGTTACT--GTCATTTCCT 1051
||| |||||||||||||| | || | | |||||||||| ||||||| ||
Sbjct 1033 ATGCAGCCAAATTTCGAGCTTTGGGAAGATATTTAATCGGATGTTACTCTGTCATTTGCT 1092
Query 1052 GCATGTCAAGAGGGTCTGTTGGGGAACAAAACGGGTTTGGTCTCGTTCCGATGA 1105
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1093 GCATGTGAAGAGGGTCTGTAGGGGAACAAAACGGGTTTGGTCTCGTTCCGATGA 1146
> AT5G05780.1 | Symbols: RPN8A, AE3, ATHMOV34 | RP non-ATPase subunit
8A | chr5:1735730-1738492 FORWARD LENGTH=1375
Length=1375
Score = 1134 bits (614), Expect = 0.0
Identities = 831/937 (89%), Gaps = 10/937 (1%)
Strand=Plus/Plus
Query 61 TTGATTCACCGAACAATGGATGTTATAAAGACGCAACAAATATCGGCAAGGACGATAGAG 120
||||||| | |||||||||||| || ||||||||||| || || ||||||||||| |||
Sbjct 118 TTGATTCTTCAAACAATGGATGTGATTAAGACGCAACAGATTTCAGCAAGGACGATCGAG 177
Query 121 AAAGTGATCGTTCACCCACTTGTCTTGCTTAGTATCGTCGACCATTACAATCGTGTAGCC 180
|||||| | ||||| ||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 178 AAAGTGGTTGTTCATCCACTAGTCTTGCTTAGTATCGTCGACCATTACAATCGCGTCGCT 237
Query 181 AAGGATACACGCAAGCGCGTCGTCGGCGTT-TTGCTCGGAAACAGCTGC-CGTGGTACTG 238
|||||| || ||||||| |||||||| ||| || || || | ||||| | |||||| ||
Sbjct 238 AAGGATTCAAGCAAGCGTGTCGTCGGTGTTCTT-CTGGGGAGCAGCT-CTCGTGGTGTTG 295
Query 239 TCGACGTCACCAACAGCTACGCAGTGCCTTTTGAGGAGGATGACAAAGACACAAGCATCT 298
| || |||||||||||||| |||||||| ||||||||||||||||||||| |||||||||
Sbjct 296 TTGATGTCACCAACAGCTATGCAGTGCCCTTTGAGGAGGATGACAAAGACCCAAGCATCT 355
Query 299 GGTTTCTTGATCACAACTACCACGAGTCGATGTTTCACATGTTCAAGAGAATTAATGCTA 358
|||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |
Sbjct 356 GGTTTCTTGATCACAACTACCATGAGTCAATGTTCCACATGTTCAAGAGAATTAATGCCA 415
Query 359 AGGAGCATATTGTGGGTTGGTACAGAACAGGTCCTAAACTTCGAGAGAATGATTTGGATG 418
|||||||| |||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 416 AGGAGCATGTTGTAGGTTGGTACAGCACAGGCCCTAAACTTCGAGAGAATGATTTGGATG 475
Query 419 TTCACGCTTTATTCAATGGCTACGTTCCAAATCCAGTGTTGGTCATTATTGATGTCCAAC 478
||||||| || ||||||||||| |||||||||||||| ||||||||||||||||||| |
Sbjct 476 TTCACGCGTTGTTCAATGGCTATGTTCCAAATCCAGTCCTGGTCATTATTGATGTCCAGC 535
Query 479 CTAAAGAACTTGGAATCCCTACAAAAGCATACTATGCTGTTGAGGAGGTGAAGGAGAATG 538
|||||||||||||||||||||| |||||||||||||| || |||||||| ||||||||||
Sbjct 536 CTAAAGAACTTGGAATCCCTACCAAAGCATACTATGCAGTGGAGGAGGTTAAGGAGAATG 595
Query 539 CTACCCAGAAAAGCCAGCAGGTGTTT-GTACACGTGCCTACAGAAATTGCGGCTCACGAA 597
|||| |||||||||||| | || ||| || || ||| ||||||||||||| ||||| |||
Sbjct 596 CTACTCAGAAAAGCCAGAAAGT-TTTCGTTCATGTGTCTACAGAAATTGCTGCTCATGAA 654
Query 598 GTCGAGGAAATTGGTGTGGAACATTTGCTCAGGGATGTAAAAGACACAACCATCAGTACC 657
|| |||||||| || ||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 655 GTTGAGGAAATCGGCGTGGAGCATTTGCTCAGGGATGTGAAAGACACAACAATCAGTACC 714
Query 658 TTGGCAACTGAGGTCACGGCGAAACTTACTGCTCTGAAGGGATTGGATGCACGACTTCGG 717
| || ||||||||||| || |||||||||||| ||||||| ||||||||||| ||||||
Sbjct 715 CTCGCGACTGAGGTCACTGCAAAACTTACTGCTTTGAAGGGGTTGGATGCACGTCTTCGG 774
Query 718 GAGATCAGGAGTTACCTTGACCTTGTAATCGAAGGAAAACTCCCAT-TAAACCATGAAAT 776
|||||| ||||||| ||||||||||||||||||||||| ||||| | |||||||||| ||
Sbjct 775 GAGATCCGGAGTTATCTTGACCTTGTAATCGAAGGAAAGCTCCC-TCTAAACCATGAGAT 833
Query 777 CTTGTACCATCTTCAGGACGTATTCAACTTGCTTCCTAACTTGAACGTCAACGAATTGGT 836
|| |||||||| |||||||| |||||||||||||||||| |||| || ||||| |||||
Sbjct 834 TTTATACCATCTACAGGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGT 893
Query 837 TAAGGCCTT-TGCAGTGAAAACAAATGACATGATGCTCGTAATCTACCTATCGTCGCTTA 895
|||||||| | | |||||||||||||||||||||||||| ||||| ||||| || || |
Sbjct 894 CAAGGCCTTCT-CCGTGAAAACAAATGACATGATGCTCGTTATCTATCTATCATCCCTCA 952
Query 896 TCCGAAGTGTAATCGCCCTCCACAATTTGATCAACAACAAGTTATTGAACAAGGAACATG 955
| || |||||||| || |||||||| |||||||||||||||||| |||||||||||||||
Sbjct 953 TTCGGAGTGTAATTGCGCTCCACAACTTGATCAACAACAAGTTACTGAACAAGGAACATG 1012
Query 956 AAAAAGCAGAGGACTCAAAGCCTGTTGCCATACCTGC 992
||||||||||||||||||||||||| |||||||||||
Sbjct 1013 AAAAAGCAGAGGACTCAAAGCCTGTGGCCATACCTGC 1049
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54166388055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5