BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478469
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11280.1 | Symbols: | Duplicated homeodomain-like superfami... 1578 0.0
> AT3G11280.1 | Symbols: | Duplicated homeodomain-like superfamily
protein | chr3:3533255-3534847 REVERSE LENGTH=1242
Length=1242
Score = 1578 bits (854), Expect = 0.0
Identities = 1019/1095 (93%), Gaps = 25/1095 (2%)
Strand=Plus/Plus
Query 1 TCCTTCACTAtctctctgtctcttaactggg---tcttcagcttctgagtcttctctctc 57
|||||||||||||||| |||||| |||||| ||||||||||||||||| | |||| |
Sbjct 16 TCCTTCACTATCTCTC--TCTCTTTACTGGGTCTTCTTCAGCTTCTGAGTC-T-TCTC-C 70
Query 58 tctctctctATCTGTCAAGT-GG----GCTTTGCTGTTTTTGTCTTCCTTCGACGACTCT 112
||||||||||||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct 71 TCTCTCTCTATCTCTCAAGTGGGCTTTGCTTTGCTGTTTTTGTCTTCCTTCGACGACTCA 130
Query 113 CTTTTGCAGATTCTCATAGATTCTTCAAAGCTTTGAGTC-TTTTTCAGATTCGAAGGTCG 171
|||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 131 CTTTTGCAGATTCTCATAAATTCTTCAAAGCTTTGAGTCTTTTTTCAGATTCGAGGGTCG 190
Query 172 G-TTT-TATATGCTTCAAATCTCTCACCCAAATCAGGTATGGAGACTCTGCATCCATTCT 229
| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 191 GTTTTATATATGCTTCAAATCTCTTACCCAAATCAGGTATGGAGACTCTGCATCCATTCT 250
Query 230 CTCACCTGCCTATCTCTGACCACCGGTTCGTTGTTCAAGAGATGGTGAGCTTACACAACT 289
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 251 CTCACCTACCTATCTCTGACCACCGGTTCGTTGTTCAAGAGATGGTGAGCTTACACAGCT 310
Query 290 CGAGCAGCAGTAGTAGCTGGACTAAAGAAGAGAACAAGATGTTCGAACGAGCTCTTGCGA 349
|||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 CGAGTAGC-G--GTAGCTGGACTAAAGAAGAGAACAAGATGTTCGAACGAGCTCTTGCGA 367
Query 350 TATACGCTGAAGACTCGCCTGATCGCTGGTTTAAAGTTGCTTCCATGATCCCTGGAAAGA 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TATACGCTGAAGACTCGCCTGATCGCTGGTTTAAAGTTGCTTCCATGATCCCTGGAAAGA 427
Query 410 CTGTTTTGGATGTTATGAAGCAATATAGTAAGCTTGAAGAAGACGTTTTCGATATCGAAG 469
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 428 CTGTTTTTGATGTTATGAAGCAATATAGTAAGCTTGAAGAAGACGTTTTCGATATTGAAG 487
Query 470 CAGGACGTGTTCCTATTCCGGGTTACCCTGCAGCTTCTTCTCCCTTGGCGTTTGATC-CT 528
||||||||||||| ||||| ||||| |||||||||||||||||||||| |||||| | |
Sbjct 488 CAGGACGTGTTCCCATTCCTGGTTATCCTGCAGCTTCTTCTCCCTTGGGGTTTGA-CACG 546
Query 529 GACACGTGTCGGAAACGGCCTAATGGAGCCAGAGGATCTGATCAAGATCGAAAGAAAGGA 588
|||| |||||| |||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 547 GACATGTGTCGTAAACGGCCTAGTGGAGCTAGAGGATCTGATCAAGATCGAAAGAAAGGA 606
Query 589 GTCCCTTGGACAGAGGAAGAGCACAGGAGATTCTTGTTGGGGCTTCTCAAGTACGGTAAA 648
|||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 607 GTCCCTTGGACAGAGGAAGAACACAGGAGATTCTTGTTAGGCCTTCTCAAGTACGGTAAA 666
Query 649 GGAGACTGGAGAAACATATCAAGAAACTTTGTTGTTTCGAAGACACCAACGCAAGTGGCG 708
||||| |||||||||||||| |||||||| || || || ||||| |||||||||||||||
Sbjct 667 GGAGATTGGAGAAACATATCGAGAAACTTCGTGGTGTCAAAGACGCCAACGCAAGTGGCG 726
Query 709 AGCCACGCCCAAAAGTATTATCAGAGACAACTCTCCGGAGCCAAGGACAAGCGCCGGCCA 768
|||||||||||||||||||| |||||||| |||||||||||||||||||| ||| |||||
Sbjct 727 AGCCACGCCCAAAAGTATTACCAGAGACAGCTCTCCGGAGCCAAGGACAAACGCAGGCCA 786
Query 769 AGTATCCATGACATCACTACCGGCAATCTTCTCAATGCCAATCTCAACCGTTCCTTTTCC 828
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 AGTATCCATGACATCACAACCGGCAATCTTCTCAATGCCAATCTCAACCGTTCCTTTTCC 846
Query 829 GATCACACCGATATCCTCCCTGATTTAGGGTTTATCGACAAGGATAATGCTGAGGAGGGA 888
||||| | ||||| ||||||||||||||||||||||| |||||| || | |||||||||
Sbjct 847 GATCATAGAGATATTCTCCCTGATTTAGGGTTTATCGATAAGGATGATACGGAGGAGGGA 906
Query 889 GTAATATTTATGGGTCAGAATCTATCTTCAGAAAACCTGTTTTCTCCATCACCAACTTCA 948
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 907 GTAATATTTATGGGTCAGAATCTCTCTTCAGAAAATCTGTTTTCTCCATCACCAACTTCA 966
Query 949 TTCGAAGCTGCCATTAACTTCGCCGGACAAAATG-CTTTCAGTGCCGGAGCTTAAGGTAA 1007
||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||| ||
Sbjct 967 TTCGAAGCTGCCATTAACTTCGCCGGAGAAAATGTCTT-CAGTGCCGGAGCTTAAGGCAA 1025
Query 1008 CATAGAATCCCCCAACTCAGCGTTCTAAAGAAGT-TGAGTTTTGAAACTGTAATTAGAGG 1066
|||||||||||| ||||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 1026 CATAGAATCCCCAAACTCAGCGTTCTTAAGAA-TCTGAGTTTTGAAACTGTAATTAGAGA 1084
Query 1067 ATTATAAGCAAAACC 1081
| |||||||||||||
Sbjct 1085 AATATAAGCAAAACC 1099
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52961574975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5