BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478471
Length=1594
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11320.1 | Symbols: | Nucleotide-sugar transporter family p... 2457 0.0
AT5G05820.1 | Symbols: | Nucleotide-sugar transporter family p... 1127 0.0
AT1G12500.1 | Symbols: | Nucleotide-sugar transporter family p... 76.8 6e-13
> AT3G11320.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr3:3546646-3548856 REVERSE LENGTH=1615
Length=1615
Score = 2457 bits (1330), Expect = 0.0
Identities = 1528/1618 (94%), Gaps = 36/1618 (2%)
Strand=Plus/Plus
Query 1 AAAAATTAGTAACAtttttttAAAAagagagagagagagCTTAAGCCAAAGATCTCTCAT 60
|||||||||||||| ||||| || | | |||||||||||||||||||||||||||||
Sbjct 10 AAAAATTAGTAACA--TTTTT---AA-A-A-AGAGAGAGCTTAAGCCAAAGATCTCTCAT 61
Query 61 TGACCTTTGcttcttcatcttcttcttc-ttctccg-atcacagtttctggattccacca 118
|||||||||||||||||||||||||| | || | | || | ||||||||||||||||
Sbjct 62 TGACCTTTGCTTCTTCATCTTCTTCTCCGATCACAGTTTCTCTCTTTCTGGATTCCACCA 121
Query 119 ttcttctc-ttgttatct-tcGTGACCTAATCTCGATTCGATCCATGGAATAATCTCTGT 176
|||||||| |||| ||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 122 TTCTTCTCTTTGTCGTCTAT-GTGACCTATTCTCGATTCGATCCATGGAATAATCTCTGT 180
Query 177 CCGAAGAAGATCTCTCATTCCCC--CAAAAGCAGACAGATTCGAAACTTTCCCCCAAAAT 234
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 181 CCGAAGAAGATCTCTCATTCCCCTTCAAAAGCAGACAGATTCGAAACTTTCCCCC-AAAT 239
Query 235 TCGTGGAGTTTTTGTGTTAGGGTTTGGATT-TTCCTCAAATTGAATCGATCAGATCG--- 290
||||||| |||||||||||||||||| || || ||||||| ||||| |||||||||
Sbjct 240 TCGTGGAAATTTTGTGTTAGGGTTTGGGTTATT-CTCAAATAGAATCAATCAGATCGTTT 298
Query 291 ----GCTTG-T---A-AAGATGAAGATAGCGGCCAATGGCCGGTTTTTCACAATCGGACT 341
||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTTTTTTTGTTAGAAGAAGATGAAGATAGCGGCCAATGGCCGGTTTTTCACAATCGGACT 358
Query 342 CGTCGCGTCATGGTACTCATCGAATATCGGAGTTTTGTTGCTGAACAAGTACTTGTTAAG 401
||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 359 CGTAGCGTCATGGTATTCATCGAACATCGGAGTTTTATTGCTGAACAAGTACTTGTTAAG 418
Query 402 CAACTATGGATTCAAGTATCCGATCTTCCTCACCATGTGTCACATGACGGCTTGTTCTCT 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CAACTATGGATTCAAGTATCCGATCTTCCTCACCATGTGTCACATGACGGCTTGTTCTCT 478
Query 462 TCTCAGCTACGTCGCCATTGCGTGGATGAAGATGGTTCCGATGCAAACGATCCGATCTAG 521
|||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 479 TCTCAGCTACGTTGCTATTGCTTGGATGAAGATGGTTCCGATGCAAACGATCCGATCTCG 538
Query 522 AGTTCAGTTTCTTAAGATCGCTGCGTTAAGTCTCGTTTTCTGTGTGTCGGTGGTTTTTGG 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AGTTCAGTTTCTTAAGATCGCTGCGTTAAGTCTCGTTTTCTGTGTGTCGGTGGTTTTTGG 598
Query 582 GAACATCTCTCTTCGGTTTCTTCCTGTATCGTTTAATCAAGCGATCGGTGCTACGACGCC 641
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 599 GAATATCTCTCTTCGGTTTCTTCCTGTATCGTTTAATCAAGCGATTGGTGCTACGACGCC 658
Query 642 GTTTTTCACCGCCGTGTTTGCTTATCTGATAACGTTCAAGAGAGAAGCTTGGTTGACTTA 701
|||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 659 GTTTTTCACCGCCGTGTTTGCTTATCTGATTACTTTTAAGAGAGAAGCTTGGTTGACTTA 718
Query 702 CTTCACTCTCGTCCCTGTTGTTACCGGTGTTGTCATTGCCAGTGGGGGTGAACCAAGTTT 761
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 719 CTTCACTCTCGTCCCTGTTGTTACCGGTGTTGTCATTGCCAGTGGGAGTGAGCCAAGTTT 778
Query 762 CCACCTGTTTGGATTCATTATGTGCATTGCAGCCACAGCTGCAAGAGCACTTAAATCAGT 821
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 779 CCACCTGTTTGGATTCATTATGTGCATTGCAGCTACAGCTGCAAGAGCACTTAAATCAGT 838
Query 822 TCTTCAAGGAATTTTGCTATCTTCAGAAGGGGAGAAGCTAAATTCAATGAACCTCCTCCT 881
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 839 TCTTCAAGGAATTTTGCTTTCTTCAGAAGGGGAGAAGCTAAATTCCATGAACCTCCTCCT 898
Query 882 TTACATGGCTCCCATAGCTGTTGTGTTCCTCCTTCCTGCTACCCTTATCATGGaaaaaaa 941
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 899 TTACATGGCTCCCATAGCTGTTGTGTTCCTCCTTCCTGCTACACTTATCATGGAAAAAAA 958
Query 942 TGTTGTTGGCATTACAATTGCGCTTGCCAGAGACGATTTTAGAATCGTTTGGTATCTGCT 1001
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGTTGTTGGCATTACAATTGCACTTGCCAGAGACGATTTTAGAATCGTTTGGTATCTGCT 1018
Query 1002 ATTCAATTCAGCACTAGCTTATTTCGTGAACTTGACCAATTTCTTAGTCACGAAACACAC 1061
||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1019 ATTCAATTCGGCGCTAGCTTATTTTGTGAACTTGACCAATTTCTTAGTCACGAAACACAC 1078
Query 1062 CAGCGCTCTGACTCTCCAGGTGCTAGGAAACGCCAAAGGTGCAGTAGCAGTGGTGGTATC 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CAGCGCTCTGACTCTCCAGGTGCTAGGAAACGCCAAAGGTGCAGTAGCAGTGGTGGTATC 1138
Query 1122 CATCCTGATATTCAGGAATCCTGTCTCAGTGACTGGAATGTTAGGTTACTCGCTCACTGT 1181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AATCCTGATATTCAGGAATCCTGTCTCAGTGACTGGAATGTTAGGTTACTCGCTCACTGT 1198
Query 1182 CTGTGGAGTTATCCTCTACAGCGAAGCCAAGAAACGAAGCAAATGAAA--GAAGCATTCG 1239
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1199 CTGTGGAGTTATCCTCTACAGCGAAGCCAAGAAACGAAGCAAATAAAAAAGAAGCATTCG 1258
Query 1240 TTATATTTGTTCAGTCCCTCAGGTAAACAAACACAGGCAAGTTTCCTCCACTGTGAACTA 1299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTATATTTGTTCAGTCCCTCAGGTAAACAAACACAGGCAAGTTTCCTCCACTGTGAACTG 1318
Query 1300 AAAAACCTTACACAGCATCTTTGGACCAAAAGCAAAGGATGTGTGAAAGCAACACCAAAG 1359
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1319 AAAAACCTTACACAGCATCTTTGGACCAAAAGCAAAGGATGCGTGAAAGCAATACCAAAG 1378
Query 1360 GATCAGAGTATCAAAAGTAATCATTTAGAGGACTTCACAAATAAGTGAtttttttCCCCT 1419
||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1379 GATGAGAGTACCAAAAGTAATCATTTAGAGGACTTCACAAATAAGTGATTTTTTTTCCCT 1438
Query 1420 TCTTTTGTTCCATTTTTTGTTAATCGGATTCTCTACTGCTTTCGTCGTAGGTTGTTCTAA 1479
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1439 TCTTTTGTTCC-TTTTTTGTTAATCGGATCCTCTACTGCTTTCGTCGTAGGTTGTTCTAA 1497
Query 1480 GAGTAACTTCGATTTAGCTTCTTCTTTTT-T-GTCGATTCTTTACATCTAGTTTTGTGAT 1537
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1498 GAGTAACTTCGATTTAGCTTCTTCTTTTTGTTGTCGATTCTTTACATCTAGTTTTGTGAT 1557
Query 1538 ATCAA-CATTTACAACACTGATTAATTAATGGAAAAGGAAAAAGCGTTTTTTGTTTTC 1594
||||| |||||||||||||||||||||||||||| |||| ||||| |||||| |||||
Sbjct 1558 ATCAAACATTTACAACACTGATTAATTAATGGAAGAGGACAAAGCTTTTTTTCTTTTC 1615
> AT5G05820.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr5:1751688-1754178 REVERSE LENGTH=1669
Length=1669
Score = 1127 bits (610), Expect = 0.0
Identities = 827/932 (89%), Gaps = 14/932 (2%)
Strand=Plus/Plus
Query 300 GATGAAGATAGCGGCCAATGGCCGGTTTTTCACAATCGGACTCGTCGCGTCATGGTACTC 359
||||||||| ||| | ||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 321 GATGAAGATGGCGACGAATGGCCGGTTTTTCACAATCGGGCTAGTCGCGTCTTGGTACTC 380
Query 360 ATCGAATATCGGAGTTTTGTTGCTGAACAAGTACTTG-TTAAGCAACTATGGATTCAAGT 418
|||||| || || || ||||||||||||||||||||| || ||||| || ||||||||||
Sbjct 381 ATCGAACATTGGTGTATTGTTGCTGAACAAGTACTTGCTT-AGCAATTACGGATTCAAGT 439
Query 419 ATCCGATCTTCCTCACCATGTGTCACATGACGGCTTGTTCTCTT-CTCAGCTACGTCGCC 477
| |||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 440 ACCCGATCTTTCTCACCATGTGTCACATGACGGCTTGTTC-GTTACTCAGCTACGTCGCC 498
Query 478 ATTGCGTGGATGAAGATGGTTCCGATGCAAACGATCCGATCTAGAGTTCAGTTTC-TTAA 536
||||| ||| ||||||||||||||||||| ||||| ||||| ||||||||| ||| ||||
Sbjct 499 ATTGCTTGGTTGAAGATGGTTCCGATGCAGACGATTCGATCCAGAGTTCAG-TTCTTTAA 557
Query 537 GATCGCTGCGT-TAAGTCTCGTTTTCTGTGTGTCGGTGGTTTTTGGGAACATCTCTCTTC 595
|||||| || | ||||||||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct 558 GATCGCAGC-TCTAAGTCTCGTTTTTTGTGTGTCGGTGGTCTTTGGTAACATCTCTCTCC 616
Query 596 GGTTTCTTCCTGTATCGTTTAATCAAGCGATCGGTGCTACGACGCCGTTTTTCACCGCCG 655
| ||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 617 GCTTTCTTCCTGTTTCGTTTAACCAAGCCATTGGTGCTACGACGCCGTTTTTCACCGCCG 676
Query 656 TGTTTGCTTATCTGATAACGT-TCAAGAGAGAAGCTTGGTTGACTTACTTCACTCTCGTC 714
|||||||||| ||||| ||| | |||| ||| |||||||||||||||||||||||||||
Sbjct 677 TGTTTGCTTACCTGATGACGCGT-AAGAAAGAGGCTTGGTTGACTTACTTCACTCTCGTC 735
Query 715 CCTGTTGTTACCGGTGTTGTCATTGCCAGTGGGGGTGAACCAAG-TTTCCACCTGTTTGG 773
||||| || ||||| ||||| ||||| ||||||||||| ||||| |||| ||||||||||
Sbjct 736 CCTGTCGTCACCGGAGTTGTTATTGCTAGTGGGGGTGAGCCAAGCTTTC-ACCTGTTTGG 794
Query 774 ATTCATTATGTGCATTGCAGCCACAGCTGCAAGAGCACTTAAATCAGTTCTTCAAGGAAT 833
|||| |||||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 795 ATTCCTTATGTGCATTGCAGCAACAGCTGCGAGAGCACTTAAATCAGTGCTTCAAGGAAT 854
Query 834 TTTGCTATCTTCAGAAGGGGAGAAGCTAAATTCAATGAACCTCCTCCTTTACATGGCTCC 893
|||||| ||||| |||||||| ||||| || || ||||| ||||||||||||||||||||
Sbjct 855 TTTGCTTTCTTCTGAAGGGGAAAAGCTGAACTCCATGAATCTCCTCCTTTACATGGCTCC 914
Query 894 CATAGCTGTTGTGTTCCTCCTTCCTGCTACCCTTATCATGGaaaaaaaTGTTGTTGGCAT 953
|||||||| ||| |||| || |||||||| ||||||||||| ||||||||||| |||||
Sbjct 915 AATAGCTGTCGTGCTCCTTCTGCCTGCTACTCTTATCATGGAGAAAAATGTTGTCGGCAT 974
Query 954 TACAATTGCGCTTGCCAGAGACGATTTTAGAATCGTTTGGTATCTGCTATTCAATTCAGC 1013
||||||||| ||||| ||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 975 TACAATTGCACTTGCAAGAGATGATTTCAGAATCGTTTGGTATCTTCTATTCAATTCAGC 1034
Query 1014 ACTAGCTTATTTCGTGAACTTGACCAATTTCTTAGTCACGAAAC-ACACCAGCGCTCTGA 1072
|| || ||||| || |||||||| |||||||||||||| |||| |||| ||||| ||||
Sbjct 1035 GCTCGCCTATTTAGTCAACTTGACAAATTTCTTAGTCAC-AAACCACACTAGCGCCCTGA 1093
Query 1073 CTCTCCAGGTGCTAGGAAACGCCAAAGGTGCAGTAGCAGTGGTGGTATCCATCCTGATAT 1132
|| | ||||||||||||||||||||||| ||||||||||||||||| || || || || |
Sbjct 1094 CTTTACAGGTGCTAGGAAACGCCAAAGGAGCAGTAGCAGTGGTGGTCTCTATTCTAATCT 1153
Query 1133 TCAGGAATCCTGTCTCAGTGACTGGAATGTTAGGTTACTCGCTCACTGTCTGTGGAGTTA 1192
||| |||||| || |||||||| |||||| | |||||||| ||||| |||||||||||||
Sbjct 1154 TCAAGAATCCGGTGTCAGTGACCGGAATGCTGGGTTACTCCCTCACCGTCTGTGGAGTTA 1213
Query 1193 TCCTCTACAGCGAAGCCAAGAAACGAAGCAAA 1224
|||| |||||||||||||||||||||| ||||
Sbjct 1214 TCCTGTACAGCGAAGCCAAGAAACGAAACAAA 1245
> AT1G12500.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr1:4263150-4265044 REVERSE LENGTH=1565
Length=1565
Score = 76.8 bits (41), Expect = 6e-13
Identities = 51/56 (91%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 604 CCTGTATCGTTTAATCAAGCGATCGGTGCTACGACGCCGTTTTTCACCGCCGTGTT 659
||||| || ||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 535 CCTGTTTCTTTTAATCAAGCTATTGGAGCTACGACGCCGTTTTTCACCGCCGTGTT 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78714454560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5