BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478475
Length=943
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11397.1 | Symbols: PRA1.A3 | prenylated RAB acceptor 1.A3 |... 1112 0.0
AT5G05987.1 | Symbols: PRA1.A2 | prenylated RAB acceptor 1.A2 |... 623 1e-177
> AT3G11397.1 | Symbols: PRA1.A3 | prenylated RAB acceptor 1.A3
| chr3:3576017-3578082 FORWARD LENGTH=1103
Length=1103
Score = 1112 bits (602), Expect = 0.0
Identities = 753/822 (92%), Gaps = 25/822 (3%)
Strand=Plus/Plus
Query 1 ACACAAAACCTGAGAACCAAAACATCAGCACAGAATC-ACTA-CTCTAGAAAT-TCGAAT 57
||||||||||||||||| |||||||| | ||||||| | || | | || ||| | | |
Sbjct 1 ACACAAAACCTGAGAACAAAAACATC--CGCAGAATCGA-TATCCCCAG-AATCACTACT 56
Query 58 C-CCAAATTAAAATCCCAAGTT----CGTTCTTCTTCGA-TTTCACAGAGCAGATTATTG 111
| |||||| ||||| ||||| | | |||||||| |||| ||||||||||||||
Sbjct 57 CTACAAATTCGAATCCAAAGTTCAAACCCTATTCTTCGATTTTCGTAGAGCAGATTATTG 116
Query 112 TAT--C-TTATTGTGTCTTCGTAGTTTTTGAAAGAGAG-A-GATGGATTGGGACAGCGTT 166
| | | ||| |||||| | |||||| || ||||||| | |||||||||||||||||||
Sbjct 117 TTTCCCTTTA-GGTGTCTCCATAGTTTCTG-AAGAGAGAAGGATGGATTGGGACAGCGTT 174
Query 167 GCTGCCGAGGATGTGATCGAGGCGTTAAGAGAGGTCGAATGGTCGGCGAGTCCTCGTTCC 226
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 175 GCTGCTGAGGATGTGATTGAGGCGTTAAGAGAGGTTGAATGGTCGGCGAGTCCTCGTTCC 234
Query 227 TTGGCCGAGTTCTTCTCCAGATTCGCTTTTCCTCGCTCTTTCTCTAAATGGATGAGCCGT 286
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 235 TTGGCCGAGTTCTTCTCCAGATTCGCGTTTCCTCGCTCTTTCTCTAAATGGATGAGCCGT 294
Query 287 CTCAAATGCAATCTCTACTACTATAGGACGAATTACTTCATCCTCTT-GATTTTCGTTCT 345
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 295 CTCAAATGCAATCTCTACTACTATAGGACGAATTACTTCATCCTCTTCG-TTTTCGTTCT 353
Query 346 GGGTCTTGCACTTATCACTCGACCTCTGGCAATTCTTGGTGCTGCTATTACAGCTTTAAG 405
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 354 GGGTCTTGCACTTATCACTCGACCTCTGGCAATTCTTGGTGCTGCTCTTACAGCTTTAAG 413
Query 406 CTTAGCTTTCCTTAACGACAGTTTTGCAGCTACTTTTAATGAGAAGATGATCCGGACCAT 465
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CTTAGCTTTCCTAAACGACAGTTTTGCAGCTACTTTTAATGAGAAGATGATCCGGACCAT 473
Query 466 TAGGCATATCTCGCCACATTTAGCTGCCAAGATGAGGCCTCCCCACATGCCTGTCATTCG 525
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 474 TAGGCATTTCTCGCCACATTTAGCTGCAAAGATGAGGCCTCCCCACATGCCTGTCATTCG 533
Query 526 TGGGCGATCTGCAACTAGAAAGACAGTCTACATTTGTGGCCAACCTCGTTTGGTATTCGT 585
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 534 TGGGCGATCTGCAACTAGAAAGACAGTCTACATTTGTGGCCAACCACGTTTGGTATTCGT 593
Query 586 GTTGA-TTGGCTTAACCGCCAGTTTTGTTCTGTGGTTCACGTCCTGCGGTTTGTTATGGG 644
|| | |||||||||||||||||||||| |||||||| || || || |||||||||||||
Sbjct 594 CTT-ACTTGGCTTAACCGCCAGTTTTGTCCTGTGGTTTACTTCATGTGGTTTGTTATGGG 652
Query 645 TCCTCTATGCATTTACCACTGCCATTCTCATGATACTTCTTCACGCAAGCCTGAGAACTC 704
||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 653 TCCTCTATGCACTTACCACTGCCCTTCTCATGATACTTCTTCATGCAAGCCTGAGAACTC 712
Query 705 CAAACCTCAAGGCACGCTTGAACACATTCCGTGAAGAATTCAGGGCTGTCTGGCGTAACT 764
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 CAAACCTCAAGGCCCGCTTGAACACATTCCGTGAAGAATTCAGGGCTGTCTGGCGTAACT 772
Query 765 ACAGCGAACTCTAA-GTCAACAGGAAGCATTGATTGGATCTT 805
|||||||||| ||| ||||||| ||||||||||| ||||||
Sbjct 773 ACAGCGAACTTTAAAGTCAACATAAAGCATTGATTCGATCTT 814
Score = 143 bits (77), Expect = 3e-33
Identities = 125/146 (86%), Gaps = 11/146 (8%)
Strand=Plus/Plus
Query 806 GACATGAACTCCAATGCCTTCCATCATGTGCACAAACACAATGGCAGTTATTATTGTCTT 865
||||||||||||||| |||| |||||||||||| || ||||| ||||||||| |||||||
Sbjct 856 GACATGAACTCCAATTCCTT-CATCATGTGCAC-AA-ACAATCGCAGTTATTCTTGTCTT 912
Query 866 CTAGTAGTAAGC--------TATAAGGCCACTTATCTGATTACAGATGCGGCTCTTTGTT 917
| |||||||||| |||||||||||| |||| |||||||||||||||||||||
Sbjct 913 CCAGTAGTAAGCTAGTAAATTATAAGGCCACTGGTCTGGTTACAGATGCGGCTCTTTGTT 972
Query 918 CTAGTTAATTAACTAGAACCACAAGG 943
||||||| || |||||||| ||||||
Sbjct 973 CTAGTTAGTTGACTAGAACTACAAGG 998
> AT5G05987.1 | Symbols: PRA1.A2 | prenylated RAB acceptor 1.A2
| chr5:1804804-1806850 FORWARD LENGTH=998
Length=998
Score = 623 bits (337), Expect = 1e-177
Identities = 552/654 (84%), Gaps = 21/654 (3%)
Strand=Plus/Plus
Query 144 GAGAGATGGATTGGGACAGCGTTGCTGCCGAGGATGTGATCGAGGCG-TTAAGAGAGGTC 202
|||| ||||||||||||| ||| || || ||||||||||| |||||| || ||||| ||
Sbjct 73 GAGATATGGATTGGGACAACGTAGCAGCTGAGGATGTGATTGAGGCGCTT-AGAGAAGTT 131
Query 203 GAATGGTCGGCGAGTCCTCGTTC-CTTGGCCGAGTTCTTCTCCAGATTCGCTTTTCCTCG 261
||||||||| || ||||||||| |||| |||||||||||| |||||||| || |||||
Sbjct 132 GAATGGTCGACGCCTCCTCGTTCGTTTGG-CGAGTTCTTCTCTAGATTCGCGTTCCCTCG 190
Query 262 CTCTTTCTCTAAATGGATGAGCCGTCTCAAATGCAATCTCTACTACTATAGGACGAATTA 321
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 CTCTTTCTCTAAATGGAAGAGCCGTCTCAAATGCAATCTCTACTACTATAGGACGAATTA 250
Query 322 CTTCATCCTCTTGATTTTCGTTCTGGGTCTTGCACTTATCACTCGACCTCTGGCAATTCT 381
||| ||| | |||||||||||||||||||||| ||| | || |||||||||| || |
Sbjct 251 CTTTATCTTGGTGATTTTCGTTCTGGGTCTTGCGCTTGTTACGAGACCTCTGGCTCTTGT 310
Query 382 TGGTGCTGCTATTACAGCTTTAAGCT-TAGCTTTCCTTAACGACAGTTTTGCAGCTACTT 440
||||||||| | ||||||||||| | |||||||||||||||||||||||||||||| ||
Sbjct 311 GGGTGCTGCTCTAACAGCTTTAAG-TATAGCTTTCCTTAACGACAGTTTTGCAGCTAGTT 369
Query 441 TTAATGAGAAGATGATCCGGACCATTAGGCATATCTCGCCACATTTAGCTGCCAAGATGA 500
||||||||||| | || | || ||||||||| |||| ||||| | ||||| || ||||
Sbjct 370 TTAATGAGAAGTTTATAAGAACGATTAGGCATTTCTCCCCACACATGGCTGCAAAAATGA 429
Query 501 GGCCTCCCCACATGCCTGTCATTCGTGGGCGATCTG-CAACTAGAAAGACAGTCTACATT 559
| |||||||||||||||||||| ||||| |||| | || | ||||||||||| ||| ||
Sbjct 430 GACCTCCCCACATGCCTGTCATCCGTGGAAGATC-GACAGCAAGAAAGACAGTATACGTT 488
Query 560 TGTGGCCAACCTCGTTTGGTATTCGTG-TTGA-TTGGCTTAACCGCCAGTTTTGTTC-TG 616
||||| |||| || | ||||||||| || | || |||| | |||||| |||| | ||
Sbjct 489 TGTGGGAAACCGCGATGGGTATTCGTTATT-ACTTTCCTTA-CAGCCAGTCTTGT-CATG 545
Query 617 TGGTTCACGTCCTGCGGTTTGTTATGGGTCCTCTATGCATTTAC-CACTGCCATT-CTCA 674
||||| | |||||||||||||| ||||||||||||||| || | |||| || || ||
Sbjct 546 TGGTTTTCTTCCTGCGGTTTGTTGTGGGTCCTCTATGCACTT-CTCACTTCCCTTGCTG- 603
Query 675 TGAT-ACTTCTTCACGCAAGCCTGAGAACTCCAAACCTCAAGGCACGCTTGAACACATTC 733
|||| | || |||| |||||| | ||||| ||||| |||||||||||||| |||||||||
Sbjct 604 TGATCA-TTGTTCATGCAAGCATAAGAACCCCAAATCTCAAGGCACGCTTAAACACATTC 662
Query 734 CGTGAAGAATTCAGGGCTGTCTGGCGTAACTACAGCGAACTCTAAGTCAACAGG 787
|||||||||||| |||||||||||||||||||||| ||||| ||||||| ||||
Sbjct 663 CGTGAAGAATTCCGGGCTGTCTGGCGTAACTACAGTGAACTTTAAGTCA-CAGG 715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46114946946
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5