BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478476
Length=1135
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translatio... 1092 0.0
> AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578388-3580569 FORWARD LENGTH=1317
Length=1317
Score = 1092 bits (591), Expect = 0.0
Identities = 674/713 (95%), Gaps = 10/713 (1%)
Strand=Plus/Plus
Query 429 GTACCAAAGCAGATGAATCAAAGGCAACAGGAGACGGCTTGTCTCAGCTGGGTAAAGGTG 488
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 567 GTACCAAAGCGGATGAATCAAAGGCAACAGGAGATGGCTTGTCTCAGCTGGGTAAAGGTG 626
Query 489 GTGCAGTTCTCATGGTGTGCAGGATATGCCACAAGAAAGGAGATCACTGGACATCAAAAT 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 GTGCAGTTCTCATGGTGTGCAGGATATGCCACAAGAAAGGAGATCACTGGACATCAAAAT 686
Query 549 GTCCTTACAAGGATCTAGCTGCAACAACTGATGCCTTCATCGACAAGCCACCCACAGGGG 608
|||| |||||||||||||||||| |||| |||| |||||| |||||||||||||||||||
Sbjct 687 GTCCATACAAGGATCTAGCTGCACCAACCGATGTCTTCATTGACAAGCCACCCACAGGGG 746
Query 609 ATTCATCTACCATGTCCGCTGCACCTGGAACTGGCAAAGCCGCATATGTCCCGCCTAGCA 668
| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 747 AATCATCTACCATGTCTGCTGCACCTGGAACTGGCAAGGCCGCGTATGTCCCGCCTAGCA 806
Query 669 TGAGAGCAGGTGCAGACAGAAGCGCTGTTGGTTCAGACATGAGGAGGAGGAACGATGAGA 728
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 807 TGAGAGCAGGTGCAGACAGAAGCGCTGTGGGTTCAGACATGAGGAGGAGGAACGATGAGA 866
Query 729 ACTCAGTGCGTGTAACCAA-CTTGTCTGAAGATACCCGTGAACCGGACTTGATGGAGCTG 787
|||| |||||||||||||| || ||| || |||||||||||||| |||||||||||||||
Sbjct 867 ACTCTGTGCGTGTAACCAATCT-GTCCGAGGATACCCGTGAACCTGACTTGATGGAGCTG 925
Query 788 TTCCATCCGTTTGGAGCTGTCACACGTGTCTATGTGGCCATCGATCAGAAAACTGGAGTG 847
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 926 TTCCACCCGTTTGGAGCTGTCACACGTGTCTATGTGGCCATTGATCAGAAAACTGGAGTG 985
Query 848 AGCAGAGGATTTGGTTTCGTCAATTTTGTGAGCAGGGAAGACGCTCAACGGGCAATCAAC 907
|||||||||||||||||||||||||| |||||||| |||||||||||| | |||||||||
Sbjct 986 AGCAGAGGATTTGGTTTCGTCAATTTCGTGAGCAGAGAAGACGCTCAAAGAGCAATCAAC 1045
Query 908 AAGTTGAATGGTTATGGTTATGATAACCTCATCCTCAGGGTTGAATGGGCCACTCCAAGA 967
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1046 AAATTGAATGGTTATGGTTATGATAACCTCATCCTCAGGGTTGAATGGGCAACTCCAAGA 1105
Query 968 CCAACCTAGAAAGAAATGTCTGATG---AGACCTTAAAACTCTTCTCATGCTCGTCTTTC 1024
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1106 CCAACCTAGAAAGAAATGTCTGATGTTGAGACCTTAAAACTCTTCTCATTCTCGTCTTTC 1165
Query 1025 TTGTTATGGATTTT-GTTTATTGACCAGTTTGTTTGTTGGTTTGGTT-CTGTACGAATAG 1082
|||||||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 1166 TTGTTATGGATTTTTGTTTATCGACCAGTTTGTTTGTTGGTTTGGTTTCTGTATGAATAG 1225
Query 1083 ATGAGAAGTTGTTGTTCAATTTCTCTTTAATACACAAGGCATTCTTTTTAAAA 1135
||||||| || | ||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1226 ATGAGAA-TT-T-GTTCAATTTCTCTTTAATACATAAGGCATGCTTTTTAAAA 1275
Score = 547 bits (296), Expect = 7e-155
Identities = 359/389 (92%), Gaps = 5/389 (1%)
Strand=Plus/Plus
Query 48 CGAGGCATAAGCGGCGCATCTGAATCCCAAATTGAGAGACGATGACGATCGATTCACAGC 107
||| ||| ||||||||||||||||||||||| ||| ||||||||||||||||| | ||
Sbjct 109 CGAAGCAAAAGCGGCGCATCTGAATCCCAAA-CGAGTGACGATGACGATCGATT--C-GC 164
Query 108 AGCAAACGACGAGCAAGTTCAGATGGGGGGAAATGGACGAAGACGACGATTTTGATTTCT 167
|||||| |||||||| ||||||||||||||||||||||||||||| ||| | |||||||
Sbjct 165 AGCAAAAAACGAGCAAATTCAGATGGGGGGAAATGGACGAAGACGAAGATCTGGATTTCT 224
Query 168 TGCTCCCTCCCAAGCAAGTGATTGGCCCAGACGAGAATGGTTTGAAGACGACGATTGAGT 227
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 225 TGCTCCCTCCCAAGCAGGTGATTGGTCCAGATGAGAATGGTTTGAAGACGACGATCGAGT 284
Query 228 ACAAATTCAACGATGAGGGGAATAAGGTTAAGATTACGACTAGGACACGTGTCCGGAAGC 287
|||||||||||||||| | |||||||||||||| |||||||||||||||||||| ||||
Sbjct 285 ACAAATTCAACGATGAAGAAAATAAGGTTAAGATAACGACTAGGACACGTGTCCGCAAGC 344
Query 288 TAGCTTCTGCTCGGCTCAACAAACGGGCTATGGAGAGGAGGAACTGGCCTAAGTTTGGAG 347
||||||||||||| ||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 345 TAGCTTCTGCTCGACTCAACAAACGAGCCATGGAGAGGAGGAACTGGCCTAAGTTCGGAG 404
Query 348 ACGCAGCCAATGAGGAAGCTGGTAGCCATCTCACTATGGTTTCTACCGAAGAGATTCTTC 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 405 ACGCAGCCAATGAGGAAGCTGGTAGCCATCTCACTATGGTTTCTACCGAAGAGATCCTTC 464
Query 408 TCGAACGACCCAGAGCTCCTGGT-ACCAA 435
||||||||||| ||||||||||| |||||
Sbjct 465 TCGAACGACCCCGAGCTCCTGGTGACCAA 493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55672404405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5