BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg478477

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G11405.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   610    4e-174


> AT3G11405.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G55570.1); 
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae 
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants 
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI 
BLink). | chr3:3580895-3581359 FORWARD LENGTH=465
Length=465

 Score =  610 bits (330),  Expect = 4e-174
 Identities = 424/469 (90%), Gaps = 8/469 (2%)
 Strand=Plus/Plus

Query  1    ATGAAAAAGGTTTCAAAACTCAGTATTATCTTCCGTGACGAACTACAACACCTCAACAAA  60
            ||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| 
Sbjct  1    ATGGAAAAGGTTTCAAAACTCAGTATTATCTTCCGTGACGAACTACAAAACTTCAACAAT  60

Query  61   GACTCGGTCGAAAATTTAGATGTCGTCGG-aaaaaaaCCATTTAACTCATCGTCGGACAA  119
            ||||  ||||||||| ||||||||||||| ||||||| ||| ||| ||||| ||||||||
Sbjct  61   GACTATGTCGAAAATATAGATGTCGTCGGCAAAAAAA-CATCTAATTCATCATCGGACAA  119

Query  120  TGAACGCGACCAATTCTCCGGCTTGTTTGCTTCTTGC-TCATCGTCTTCGTTTCAAATGC  178
            |||| ||||||||||| || ||||||||| ||||| | ||| ||||||||||||||||||
Sbjct  120  TGAAAGCGACCAATTCGCCAGCTTGTTTGGTTCTT-CGTCACCGTCTTCGTTTCAAATGC  178

Query  179  CTCTTCAGTACCCGAATTACAAAAAGGAACAATACGAGATTATGTCGGAGGAAGAACTCG  238
            ||||||||||||||||||||  ||||||||| ||||| ||||||||||||||||||||||
Sbjct  179  CTCTTCAGTACCCGAATTACGCAAAGGAACAGTACGACATTATGTCGGAGGAAGAACTCG  238

Query  239  ATCAACTTCTCAAACTCTATGGTCTGCCAATAGATATCGGTGACTTGTCTTACAAAAAAG  298
            ||| |||||||||||||||||||||||| | |||||||||| ||||||| | ||||||||
Sbjct  239  ATCGACTTCTCAAACTCTATGGTCTGCCTACAGATATCGGTAACTTGTCCTGCAAAAAAG  298

Query  299  AATTTGTAGTGGGTGCATTCTTGTGGGAGACGGGGTTAAATTCTTCTCTGGATGAGCATG  358
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  299  AATTTGCAGTGGGTGCATTCTTGTGGGAGACGGGGTTAAATTCTTCTCTGGATGAGCATG  358

Query  359  ATTCAGTAAACCCTAATTCTTCCACTGATGATTTGGATGAGAGCTCTTTGATAGGATT-G  417
            ||||||||||||||||||| |||| |||||||||||| ||||| ||||||||||| || |
Sbjct  359  ATTCAGTAAACCCTAATTCGTCCATTGATGATTTGGAAGAGAGATCTTTGATAGGGTTAG  418

Query  418  ATGACGGTTCT-GATAAAAGATATGGTTCACTTTATTTTTCGTGTGTAG  465
             |||| ||||| | |||| ||||||||||| ||||| || |||| ||||
Sbjct  419  -TGACAGTTCTAG-TAAAGGATATGGTTCAATTTATATTCCGTGGGTAG  465



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22103024680


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5