BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478477 Length=465 Score E Sequences producing significant alignments: (Bits) Value AT3G11405.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 610 4e-174 > AT3G11405.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:3580895-3581359 FORWARD LENGTH=465 Length=465 Score = 610 bits (330), Expect = 4e-174 Identities = 424/469 (90%), Gaps = 8/469 (2%) Strand=Plus/Plus Query 1 ATGAAAAAGGTTTCAAAACTCAGTATTATCTTCCGTGACGAACTACAACACCTCAACAAA 60 ||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 1 ATGGAAAAGGTTTCAAAACTCAGTATTATCTTCCGTGACGAACTACAAAACTTCAACAAT 60 Query 61 GACTCGGTCGAAAATTTAGATGTCGTCGG-aaaaaaaCCATTTAACTCATCGTCGGACAA 119 |||| ||||||||| ||||||||||||| ||||||| ||| ||| ||||| |||||||| Sbjct 61 GACTATGTCGAAAATATAGATGTCGTCGGCAAAAAAA-CATCTAATTCATCATCGGACAA 119 Query 120 TGAACGCGACCAATTCTCCGGCTTGTTTGCTTCTTGC-TCATCGTCTTCGTTTCAAATGC 178 |||| ||||||||||| || ||||||||| ||||| | ||| |||||||||||||||||| Sbjct 120 TGAAAGCGACCAATTCGCCAGCTTGTTTGGTTCTT-CGTCACCGTCTTCGTTTCAAATGC 178 Query 179 CTCTTCAGTACCCGAATTACAAAAAGGAACAATACGAGATTATGTCGGAGGAAGAACTCG 238 |||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||| Sbjct 179 CTCTTCAGTACCCGAATTACGCAAAGGAACAGTACGACATTATGTCGGAGGAAGAACTCG 238 Query 239 ATCAACTTCTCAAACTCTATGGTCTGCCAATAGATATCGGTGACTTGTCTTACAAAAAAG 298 ||| |||||||||||||||||||||||| | |||||||||| ||||||| | |||||||| Sbjct 239 ATCGACTTCTCAAACTCTATGGTCTGCCTACAGATATCGGTAACTTGTCCTGCAAAAAAG 298 Query 299 AATTTGTAGTGGGTGCATTCTTGTGGGAGACGGGGTTAAATTCTTCTCTGGATGAGCATG 358 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 AATTTGCAGTGGGTGCATTCTTGTGGGAGACGGGGTTAAATTCTTCTCTGGATGAGCATG 358 Query 359 ATTCAGTAAACCCTAATTCTTCCACTGATGATTTGGATGAGAGCTCTTTGATAGGATT-G 417 ||||||||||||||||||| |||| |||||||||||| ||||| ||||||||||| || | Sbjct 359 ATTCAGTAAACCCTAATTCGTCCATTGATGATTTGGAAGAGAGATCTTTGATAGGGTTAG 418 Query 418 ATGACGGTTCT-GATAAAAGATATGGTTCACTTTATTTTTCGTGTGTAG 465 |||| ||||| | |||| ||||||||||| ||||| || |||| |||| Sbjct 419 -TGACAGTTCTAG-TAAAGGATATGGTTCAATTTATATTCCGTGGGTAG 465 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22103024680 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5