BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478481
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11440.1 | Symbols: ATMYB65, MYB65 | myb domain protein 65 |... 2942 0.0
AT5G06100.2 | Symbols: MYB33, ATMYB33 | myb domain protein 33 |... 776 0.0
> AT3G11440.1 | Symbols: ATMYB65, MYB65 | myb domain protein 65
| chr3:3602093-3605104 FORWARD LENGTH=2015
Length=2015
Score = 2942 bits (1593), Expect = 0.0
Identities = 1841/1957 (94%), Gaps = 32/1957 (2%)
Strand=Plus/Plus
Query 1 ACTTGGATCTCTTTCTCTAT-C---TCTC--TCCATTTTCTGAGATATCTTCGCTCGAGC 54
|||| |||||||||||| || | |||| || ||| |||||||||||||| |||||||
Sbjct 23 ACTTTGATCTCTTTCTCCATCCTTGTCTCTGTCGATTCTCTGAGATATCTTCTCTCGAGC 82
Query 55 --TTTCCCGCGTTATCTCTCTCCCTCTCCTGGTGGGAGCTTGATGTCTAAATTGTTCTTG 112
|||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 83 TTTTTCCCGCGTTATCTCTCTCCCACTCCTGGTTGGAGCTTGATGTCTAAATTGTTATTG 142
Query 113 AAGTGCTGGAGTCTGTGTTGCGTTAAGTAGAAATAGATGAGTTACACAACAACCACGGTT 172
|| ||||||||||||| |||| ||||||||||| ||||||||||||| || | || | |
Sbjct 143 AACTGCTGGAGTCTGTCTTGCTTTAAGTAGAAAGAGATGAGTTACACGACGGCGACTGCT 202
Query 173 GATAGTGATGATGGTATGCACTCCAGCATCCATAATGAATCACCAGCTGCTGATAGTATT 232
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 203 GATAGTGATGATGGTATGCACTCCAGCATCCATAATGAATCACCAGCTCCTGATAGTATT 262
Query 233 GGCAATGGCTGCAGAAGTAGAGGGAAAAGCCGTGTCCTGAAGAAAGGACCATGGACATCA 292
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 263 AGCAATGGCTGCAGAAGTAGAGGGAAAAGAAGTGTCCTGAAGAAAGGACCATGGACTTCA 322
Query 293 ACTGAAGATGGGATTTTAATTGATTATGTAAAGAAGCATGGCGAGGGTAACTGGAATGCT 352
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 323 ACTGAAGACGGGATTTTAATTGATTATGTAAAGAAGCACGGCGAGGGTAACTGGAATGCT 382
Query 353 GTGCAGAAACACACGAGCCTGGCCCGGTGTGGTAAAAGCTGTCGTCTGAGATGGGCTAAT 412
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 383 GTGCAGAAACACACTAGCCTGGCCCGTTGTGGTAAAAGCTGTCGTCTGAGATGGGCTAAT 442
Query 413 CATCTGAGGCCAAACTTGAAGAAAGGAGCATTTAGCCAAGAAGAAGAACAGCTCATTGTT 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 CATCTGAGGCCAAACTTGAAGAAAGGAGCATTTAGCCAAGAAGAAGAACAGCTCATTGTT 502
Query 473 GAAATGCACGCCAAGATGGGAAATAAATGGGCACAGATGGCTGAACATTTACCTGGTCGA 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 GAAATGCACGCCAAGATGGGAAATAAATGGGCACAGATGGCTGAACATTTACCTGGTCGA 562
Query 533 ACAGATAATGAGATAAAGAATTATTGGAACACTCGTATCAAGAGGAGACAACGTGCAGGC 592
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 563 ACAGATAATGAGATAAAGAATTATTGGAACACTCGTATCAAGAGGAGACAACGAGCAGGC 622
Query 593 TTACCACTTTACCCTCCTGAAATCCATGTTGAAGACTTTCAGTGGAGCGAAGAGTATACA 652
|||||||||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||
Sbjct 623 TTACCACTTTACCCTCCTGAAATCTATGTTGATGACCTTCATTGGAGCGAAGAGTATACA 682
Query 653 AAGAGTAATATCATAAGAGTAGATAGAAGAAGA---CATCAAGATTTCTTGCAGTTGGGG 709
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 683 AAGAGTAATATCATAAGAGTAGATAGAAGAAGAAGACATCAAGATTTCTTGCAGTTGGGG 742
Query 710 AATTCCAAAGCTAATGTCTTATTTGATGATCTAAATTTTGCTGCTAGCTTGTTACCTGCC 769
||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 743 AATTCTAAAGATAATGTCTTATTTGACGATCTAAATTTTGCTGCTAGCTTGTTACCTGCC 802
Query 770 GCTTCTGACCTATCAGATTTGGTTGCATGCAACATGCTAGGAACTGGCCCAAGTTCTTCT 829
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 803 GCTTCTGACCTATCAGATTTGGTTGCATGCAACATGCTAGGAACTGGCGCAAGTTCTTCC 862
Query 830 CGGTATGAAAGCTACATGCCACCAATATTGCCTTCCCCAAAGCAAATCTGGGAATCTGGA 889
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 CGGTATGAGAGCTACATGCCACCAATATTGCCTTCCCCAAAGCAAATCTGGGAATCTGGA 922
Query 890 TCTCGGTTTCCTATGTGCAGCAGTAACATAAAGCATGAATTCCAATATCCGGAACACTTT 949
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 923 TCTCGGTTTCCCATGTGCAGCAGTAACATAAAGCATGAATTCCAATCGCCGGAACACTTT 982
Query 950 CAGAATACTGCT-TCACAGAAGAATCCCAGATCTTGCAGTATCTCGCCTTGTGATGTTGA 1008
|||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 CAGAATACGGCTGT-ACAGAAGAATCCCAGATCTTGCAGTATCTCGCCTTGTGATGTTGA 1041
Query 1009 TCATCCTCCTTACGGAAACCAACATTTATCTGATATGATGAT--T-CCAGATAGCCATAC 1065
||||| |||||| | ||||||||||| ||| |||||||||| | || |||||||||||
Sbjct 1042 TCATCATCCTTATGAAAACCAACATTCGTCTCATATGATGATGGTTCCTGATAGCCATAC 1101
Query 1066 CGTTATGTATGGCATGCTTCCTACTTCTAAGCCCTCGTTTGGGGCAGTGAAGCTGGAGCT 1125
|||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1102 AGTTACGTATGGCATGCATCCTACTTCTAAGCCCTTGTTTGGGGCAGTGAAGCTGGAGCT 1161
Query 1126 CCCTTCATTCCAATATTCAGAAACTAGTGCATTTGATCAGTGGAAGACGACACCGTCACC 1185
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1162 CCCTTCATTCCAATATTCAGAAACTAGTGCATTTGATCAGTGGAAGACGACTCCGTCACC 1221
Query 1186 TCCACACTCAGATCTCCTTGACTCTGTTGATGCCTATATTCAATCTCCACCATCATCGCA 1245
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1222 TCCACACTCAGATCTCCTTGACTCTGTTGATGCCTATATTCAATCTCCACCACCATCGCA 1281
Query 1246 GGTAGAGGAGTCAGATTGTTTCTCTTCATGCGACACCGGCCTACTAGATATGTTACTTCA 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 GGTAGAGGAGTCAGATTGTTTCTCTTCATGCGACACCGGCCTACTAGATATGTTACTTCA 1341
Query 1306 TGAGGCCAAGATCAAAACTAGTGCGAAGCACAGTTTGTTGATGTCATCACCCAAGAAGAG 1365
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1342 TGAGGCCAAGATCAAAACTAGTGCGAAGCACAGTTTGTTGATGTCATCACCCCAGAAGAG 1401
Query 1366 TTTCAGTTCAACTACTTGCACGACCAATGTTACTCAGAATGTACCACGTGGCGGC-AC-- 1422
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1402 TTTCAGTTCAACTACTTGCACGACCAATGTTACTCAGAATGTACCACGTGGCAGCGAAAA 1461
Query 1423 CCTGATCAAATCAGGTGAATATGAAGATTCCCAAAAGAATTTGACTCGCTCCGAGATTAC 1482
||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1462 CCTGATCAAATCAGGAGAATATGAAGATTCCCAAAAGTATTTGGGTCGCTCCGAGATTAC 1521
Query 1483 AA-TGCCCAT-GCAACTTAGCGCAGGTGGAATTTCATCAGCTTTTGCAGGGAATGTTGTA 1540
|| | ||| | ||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1522 AAGT-CCC-TCGCAACTTAGTGCAGGTGGTTTTTCATCAGCTTTTGCAGGGAATGTTGTA 1579
Query 1541 AAGACAGAAGAGTTTGATCAGGTTTGGGAACCAAAGAGAGTTGATACTA-CACGGCCTGA 1599
|||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1580 AAGACAGAAGAGTTGGATCAGGTTTGGGAACCAAAGAGAGTTGATA-TAACACGGCCTGA 1638
Query 1600 TGTTTTACTTGCGTCGAGCTGGCTTGACCAAGGCTGTTTTGGGATTGTTAGAGACACAAG 1659
|||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct 1639 TGTTTTACTTGCGTCGAGCTGGCTTGACCAAGGCTGTTATGGCATTGTTAGTGACACAAG 1698
Query 1660 CAGCATGAGCGATGCGCTTGCGCTTCTTCTTGGTGGTGACGACACTGGGAACAGTTACGT 1719
||||||||| ||||||||||| |||||| ||||||||||||| |||||||||||||||
Sbjct 1699 CAGCATGAGTGATGCGCTTGCACTTCTT---GGTGGTGACGACATTGGGAACAGTTACGT 1755
Query 1720 GACTGTTGGGTCATCATCAGGTCAAACACCACGAGGCGTTGGGTCATGTGGATGGACTAA 1779
||||||||||||||||||||||||| ||||||||||||| ||||| | ||||||||| ||
Sbjct 1756 GACTGTTGGGTCATCATCAGGTCAAGCACCACGAGGCGTCGGGTCTTATGGATGGACCAA 1815
Query 1780 TATGCCTCCTGTTTGGTCGTTGTAACGAAATGAACCATATCACAC--TTTGAATCTTTCT 1837
||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||
Sbjct 1816 TATGCCTCCTGTTTGGTCGCTGTAACAAAATGAACCATATCACACAATTTGAATCTTTCT 1875
Query 1838 GTATTTTCATGAAACTGGCTTACATGACTTGC-GGTTTGTTATAGTTGAGAGAAGATTTA 1896
||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1876 GTATTTTCATGCACCTGGCTTACATGACTTGGTGGTTTGTTATAGTTGAGAGAAGATTTG 1935
Query 1897 TGGACTTGGTaaaaaaaTTGGATTTTCTTCACCTGAT 1933
||||||||||||||| ||||||||||||||||||||
Sbjct 1936 TGGACTTGGTAAAAAT-TTGGATTTTCTTCACCTGAT 1971
> AT5G06100.2 | Symbols: MYB33, ATMYB33 | myb domain protein 33
| chr5:1837914-1840727 FORWARD LENGTH=2127
Length=2127
Score = 776 bits (420), Expect = 0.0
Identities = 939/1179 (80%), Gaps = 77/1179 (7%)
Strand=Plus/Plus
Query 202 CCATAATGAATCACCAGCTGCTGATAG-TATTGGCAA-TGGCTGCAGAAGTAGA-GGGAA 258
||||||||| ||||||||||||||| | || ||| || || ||||||||||||| ||| |
Sbjct 250 CCATAATGAGTCACCAGCTGCTGAT-GATAATGG-AAGTGACTGCAGAAGTAGATGGG-A 306
Query 259 AAGCCGTGTC-CTGAAGAAAGGACCATGGACATCAACTGAAGATGGGATT-TTAATTGAT 316
| | || | || |||||||| || |||| ||| ||||||||| ||| || |||||
Sbjct 307 TGGTCATG-CTCTCAAGAAAGGCCCTTGGAGTTCAGCTGAAGATGATATTCTT-ATTGAC 364
Query 317 TATGTAAAGAAGCATGGCGAGGGTAACTGGAATGCTGTGCAGAAACACACGAGCCTGGCC 376
||||| || |||||||| |||||||||||||||||||||||||||||||| ||| ||
Sbjct 365 TATGTGAATAAGCATGGTGAGGGTAACTGGAATGCTGTGCAGAAACACACCAGCTTGTTT 424
Query 377 CGGTGTGGTAAAAGCTGTCGTCTGAGATGGGCTAATCATCTGAGGCCAAACTTGAAGAAA 436
|| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 425 CGTTGTGGTAAAAGCTGTCGTCTAAGATGGGCTAATCATCTGAGGCCAAATTTGAAGAAA 484
Query 437 GGAGCATTTAGCCAAGAAGAAGAACAGCTCATTGTTGAAATGCACGCCAAGATGGGAAAT 496
||||| ||||| ||||||||||||||||| || |||||| |||| ||||||||||| |||
Sbjct 485 GGAGCTTTTAGTCAAGAAGAAGAACAGCTTATCGTTGAATTGCATGCCAAGATGGGTAAT 544
Query 497 AAATGGGCACAG-ATGGCTGAACATTTACCTGGTCGAACAGATAATGAGATAAAGAATTA 555
| |||||||| | ||||||| |||||| ||||| ||||| ||||||||||||||||||||
Sbjct 545 AGATGGGCAC-GTATGGCTGCACATTTGCCTGGCCGAACGGATAATGAGATAAAGAATTA 603
Query 556 TTGGAACACTCGTATCAAGAGGAGACAACGTGCAGGCTTACCACTTTACCCTCCTGAAAT 615
|||||||||||||||||||||| ||||||| || || || |||||||| |||||||| ||
Sbjct 604 TTGGAACACTCGTATCAAGAGGCGACAACGAGCTGGTTTGCCACTTTATCCTCCTGAGAT 663
Query 616 CCATGTTGAAG-ACTTTCAGTGGAG-CGAAGAGTATACAAAGAGTAATATCATAAGAGTA 673
|||||||| | || || ||||||| | |||||||| | |||||| | | || | | |
Sbjct 664 GCATGTTGAGGCAC-TTGAGTGGAGTC-AAGAGTATGCCAAGAGT-AGA-GTTATG-GGA 718
Query 674 GATAGA-AGAAGACATCAAGATTTCTTGCAGTTGGGGAATTCCAAAGCTAATGTCTTATT 732
|| ||| |||||||||||||||||||||||| |||||| || || |||||||||| ||
Sbjct 719 GA-AGATAGAAGACATCAAGATTTCTTGCAGCTGGGGAGTTGTGAATCTAATGTCTTCTT 777
Query 733 TGATGA-TCTAAATTTTGCTGCTAGCTTGTTACCTGCCGCTTCTGACCTATCAGATTTGG 791
|||| | ||| |||||| | | | | || |||||| ||| ||| ||| ||||| ||
Sbjct 778 TGAT-ACTCTTAATTTTAC--CGA-CATGGTACCTGGTACTTTTGATCTAGCAGATATGA 833
Query 792 TTGCATGC-AACATGCTAGG-AACTGGCCCAAGTTCTTCTCGGTATGAAAGCTACATGCC 849
||| | | || || | || |||| | |||||||| |||| ||||||| || |||| |
Sbjct 834 CTGCCTACAAAAAT-ATGGGTAACT-GTGCAAGTTCTCCTCGATATGAAAACTTCATGAC 891
Query 850 ACCAATATTGCCTTCCCCAAAGCAAATCTGGGAATCTG-GATCTCGGTTTCCTATGTGCA 908
||||| | | || ||| | |||| | | |||||||||| | | | || |||| ||| |
Sbjct 892 ACCAACAATCCCCTCCTCGAAGCGACTTTGGGAATCTGAGTTGT-TGTATCCTGGGTGTA 950
Query 909 GCAGTAACATAAAGCATGAATTC-CAATATCCGGAACACTTTCAGAATAC-TGCTTCACA 966
|||||| ||||||||| |||||| | | || ||||| || | ||| || | || ||||
Sbjct 951 GCAGTACCATAAAGCAAGAATTCTC-GTCGCCTGAACAATTCCGGAACACAT-CTCCACA 1008
Query 967 GAA-GAATCCCAGATCTTGCAG-TATCTC-G--CCTTGTGATGTTGATCATCCTCCT-TA 1020
|| || | ||| | ||||||| | |||| | |||||||||||||| |||||| || ||
Sbjct 1009 -AACGATTTCCAAAACTTGCAGCT-TCTCAGTTCCTTGTGATGTTGAGCATCCT-CTCTA 1065
Query 1021 CGGAAACCAACATTTATCTGATATGATGATTCCAGATAGCCATACCGTTATGTATGGCA- 1079
||||||| ||||| | ||| | | ||||||||||||||||||||| || | ||||||
Sbjct 1066 TGGAAACCGACATTCACCTG-T-T-ATGATTCCAGATAGCCATACCCCTACGGATGGCAT 1122
Query 1080 TGCTTCC-TACTTCTAAGCCCTCGTTTGGGGCAGTGAAGCTGGAGCTCCCTTCATTCCAA 1138
|| |||| || ||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1123 TG-TTCCTTA-TTCTAAGCCCTTATATGGGGCAGTGAAGCTGGAGCTCCCTTCATTCCAA 1180
Query 1139 TATTCAGAAACTAGTGCATTTGATCAGTGGAAGACGACACCGTCA-C-C-TCCACACTCA 1195
||||||||||| | ||||||| |||||||||| | | ||||| | | |||||||||
Sbjct 1181 TATTCAGAAACAA---CATTTGACCAGTGGAAGA--A-ATCGTCATCTCCTCCACACTCT 1234
Query 1196 GATCTCCTTGA-CTCTGTTGATGCCTATATTCAATCTCCACCATCATCG-CAGGTAGAG- 1252
||||||||||| | || ||||| | || ||||| ||||||||| || | | || |||
Sbjct 1235 GATCTCCTTGATCCCT-TTGATACTTACATTCAGTCTCCACCACCACCAACGGGGGGAGA 1293
Query 1253 -GAGTCAGATTG-T-TTCTC-TTCATGCGACACCGGCCTACTAGATATGTTACTTCATG- 1307
|||||||||| | ||| || || | || || || || |||||||| |||| ||
Sbjct 1294 AGAGTCAGATTTATATTCAAATTT-TG--ATACTGGTCTGCTCGATATGTTGCTTC-TGG 1349
Query 1308 AGGCCAAGATCA-AAAC--TAGTGCGAAGCACAGTTTGT 1343
| |||||||||| ||| |||| | ||| ||| |||||
Sbjct 1350 AAGCCAAGATCAGAAATAATAGTACAAAGAACAATTTGT 1388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97037653485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5