BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478489 Length=436 Score E Sequences producing significant alignments: (Bits) Value AT3G11500.1 | Symbols: | Small nuclear ribonucleoprotein famil... 695 0.0 AT2G23930.1 | Symbols: SNRNP-G | probable small nuclear ribonuc... 329 1e-89 > AT3G11500.1 | Symbols: | Small nuclear ribonucleoprotein family protein | chr3:3621409-3622606 REVERSE LENGTH=589 Length=589 Score = 695 bits (376), Expect = 0.0 Identities = 418/438 (95%), Gaps = 3/438 (1%) Strand=Plus/Plus Query 1 CTGGAATCAATCGAGTAAAGTGTTCATAGCTGAGAAAAACCCTAAGCTCTCGTTTTTCTT 60 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 54 CTGGAATCAATCGAGTAAAGTGTTCGTAGCTGAGAAAAACCCTAAGCTCTCGTTTTTCGT 113 Query 61 CTTCTCCGATTCTGCAAGTATGAGTCGATCTGGTCAGCCTCCGGATCTCAAGAAGTACAT 120 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 114 CTTCTCCGATTCTGCAAGTATGAGTCGATCAGGTCAGCCTCCAGATCTCAAGAAGTACAT 173 Query 121 GGACAAGAAACTCCAAATTAAGCTTAATGCCAACCGAATGGTTGTTGGAACTCTCCGTGG 180 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 174 GGACAAGAAACTCCAAATTAAGCTTAATGCCAACAGAATGGTTGTTGGAACTCTCCGTGG 233 Query 181 GTTTGATCAGTTCATGAATCTTGTTGTGGATAACACTGTTGAAGTCAATGGTGATGACAA 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 234 CTTTGATCAGTTCATGAATCTTGTTGTGGATAACACTGTTGAAGTCAATGGTGATGACAA 293 Query 241 AACTGACATTGGGATGGTGGTTATAAGAGGAAACAGCATTGTCACCGTTGAAGCTCTCGA 300 ||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| Sbjct 294 AACTGACATTGGGATGGTGGTGATAAGAGGAAACAGCATTGTTACTGTTGAAGCTCTCGA 353 Query 301 ACCAGTTGGAAGATCTTAGCTTATGACTTAGCACCCTCAAGTAATCATCTTCTGTAATAT 360 ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 354 ACCAGTTGGAAGATCTTAGCTTATGACTTTTCACCCCCAAGTAATCATCTTCTGTAATAT 413 Query 361 TAG--TTTGACTTAGTTTGCTTTCTGTACCGGCATGAATCGATCTTGAGTTTTATTTGAT 418 || ||||||||| |||||| |||||||||||||||||| ||||||| ||||||||||| Sbjct 414 GAGACTTTGACTTACTTTGCTCTCTGTACCGGCATGAATCAATCTTGA-TTTTATTTGAT 472 Query 419 GAAATCCTCTTCTTTGGC 436 ||| |||||||||||||| Sbjct 473 GAATTCCTCTTCTTTGGC 490 > AT2G23930.1 | Symbols: SNRNP-G | probable small nuclear ribonucleoprotein G | chr2:10182251-10183240 FORWARD LENGTH=559 Length=559 Score = 329 bits (178), Expect = 1e-89 Identities = 228/253 (90%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 65 TCCGATTCTGCAAGTATGAGTCGATCTGGTCAGCCTCCGGATCTCAAGAAGTACATGGAC 124 ||||||| ||||| ||||||||| || ||||||||||||||||| |||||||||||||| Sbjct 88 TCCGATTTTGCAACTATGAGTCGTTCAGGTCAGCCTCCGGATCTTAAGAAGTACATGGAT 147 Query 125 AAGAAACTCCAAATTAAGCTTAATGCCAACCGAATGGTTGTTGGAACTCTCCGTGGGTTT 184 ||||| |||||||| ||||||||||| |||||||||||| ||||||||| ||||||||| Sbjct 148 AAGAAGCTCCAAATCAAGCTTAATGCTAACCGAATGGTTACTGGAACTCTTCGTGGGTTT 207 Query 185 GATCAGTTCATGAATCTTGTTGTGGATAACACTGTTGAAGTCAATGGTGATGACAAAACT 244 |||||||||||||||||||||||||||||||||||||| || || ||| | |||||||| Sbjct 208 GATCAGTTCATGAATCTTGTTGTGGATAACACTGTTGAGGTGAACGGTAACGACAAAACC 267 Query 245 GACATTGGGATGGTGGTTATAAGAGGAAACAGCATTGTCACCGTTGAAGCTCTCGAACCA 304 ||||| ||||||||||| || |||||||||||||||||||| ||||||||||| |||||| Sbjct 268 GACATCGGGATGGTGGTGATTAGAGGAAACAGCATTGTCACTGTTGAAGCTCTTGAACCA 327 Query 305 GTTGGAAGATCTT 317 || || ||||||| Sbjct 328 GTGGGCAGATCTT 340 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20710312588 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5