BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478489
Length=436
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11500.1 | Symbols: | Small nuclear ribonucleoprotein famil... 695 0.0
AT2G23930.1 | Symbols: SNRNP-G | probable small nuclear ribonuc... 329 1e-89
> AT3G11500.1 | Symbols: | Small nuclear ribonucleoprotein family
protein | chr3:3621409-3622606 REVERSE LENGTH=589
Length=589
Score = 695 bits (376), Expect = 0.0
Identities = 418/438 (95%), Gaps = 3/438 (1%)
Strand=Plus/Plus
Query 1 CTGGAATCAATCGAGTAAAGTGTTCATAGCTGAGAAAAACCCTAAGCTCTCGTTTTTCTT 60
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 54 CTGGAATCAATCGAGTAAAGTGTTCGTAGCTGAGAAAAACCCTAAGCTCTCGTTTTTCGT 113
Query 61 CTTCTCCGATTCTGCAAGTATGAGTCGATCTGGTCAGCCTCCGGATCTCAAGAAGTACAT 120
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 114 CTTCTCCGATTCTGCAAGTATGAGTCGATCAGGTCAGCCTCCAGATCTCAAGAAGTACAT 173
Query 121 GGACAAGAAACTCCAAATTAAGCTTAATGCCAACCGAATGGTTGTTGGAACTCTCCGTGG 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 174 GGACAAGAAACTCCAAATTAAGCTTAATGCCAACAGAATGGTTGTTGGAACTCTCCGTGG 233
Query 181 GTTTGATCAGTTCATGAATCTTGTTGTGGATAACACTGTTGAAGTCAATGGTGATGACAA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 CTTTGATCAGTTCATGAATCTTGTTGTGGATAACACTGTTGAAGTCAATGGTGATGACAA 293
Query 241 AACTGACATTGGGATGGTGGTTATAAGAGGAAACAGCATTGTCACCGTTGAAGCTCTCGA 300
||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 294 AACTGACATTGGGATGGTGGTGATAAGAGGAAACAGCATTGTTACTGTTGAAGCTCTCGA 353
Query 301 ACCAGTTGGAAGATCTTAGCTTATGACTTAGCACCCTCAAGTAATCATCTTCTGTAATAT 360
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 354 ACCAGTTGGAAGATCTTAGCTTATGACTTTTCACCCCCAAGTAATCATCTTCTGTAATAT 413
Query 361 TAG--TTTGACTTAGTTTGCTTTCTGTACCGGCATGAATCGATCTTGAGTTTTATTTGAT 418
|| ||||||||| |||||| |||||||||||||||||| ||||||| |||||||||||
Sbjct 414 GAGACTTTGACTTACTTTGCTCTCTGTACCGGCATGAATCAATCTTGA-TTTTATTTGAT 472
Query 419 GAAATCCTCTTCTTTGGC 436
||| ||||||||||||||
Sbjct 473 GAATTCCTCTTCTTTGGC 490
> AT2G23930.1 | Symbols: SNRNP-G | probable small nuclear ribonucleoprotein
G | chr2:10182251-10183240 FORWARD LENGTH=559
Length=559
Score = 329 bits (178), Expect = 1e-89
Identities = 228/253 (90%), Gaps = 0/253 (0%)
Strand=Plus/Plus
Query 65 TCCGATTCTGCAAGTATGAGTCGATCTGGTCAGCCTCCGGATCTCAAGAAGTACATGGAC 124
||||||| ||||| ||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 88 TCCGATTTTGCAACTATGAGTCGTTCAGGTCAGCCTCCGGATCTTAAGAAGTACATGGAT 147
Query 125 AAGAAACTCCAAATTAAGCTTAATGCCAACCGAATGGTTGTTGGAACTCTCCGTGGGTTT 184
||||| |||||||| ||||||||||| |||||||||||| ||||||||| |||||||||
Sbjct 148 AAGAAGCTCCAAATCAAGCTTAATGCTAACCGAATGGTTACTGGAACTCTTCGTGGGTTT 207
Query 185 GATCAGTTCATGAATCTTGTTGTGGATAACACTGTTGAAGTCAATGGTGATGACAAAACT 244
|||||||||||||||||||||||||||||||||||||| || || ||| | ||||||||
Sbjct 208 GATCAGTTCATGAATCTTGTTGTGGATAACACTGTTGAGGTGAACGGTAACGACAAAACC 267
Query 245 GACATTGGGATGGTGGTTATAAGAGGAAACAGCATTGTCACCGTTGAAGCTCTCGAACCA 304
||||| ||||||||||| || |||||||||||||||||||| ||||||||||| ||||||
Sbjct 268 GACATCGGGATGGTGGTGATTAGAGGAAACAGCATTGTCACTGTTGAAGCTCTTGAACCA 327
Query 305 GTTGGAAGATCTT 317
|| || |||||||
Sbjct 328 GTGGGCAGATCTT 340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20710312588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5