BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478490
Length=656
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11510.1 | Symbols: | Ribosomal protein S11 family protein ... 974 0.0
AT3G52580.1 | Symbols: | Ribosomal protein S11 family protein ... 521 3e-147
> AT3G11510.1 | Symbols: | Ribosomal protein S11 family protein
| chr3:3623457-3624940 REVERSE LENGTH=827
Length=827
Score = 974 bits (527), Expect = 0.0
Identities = 617/660 (93%), Gaps = 7/660 (1%)
Strand=Plus/Plus
Query 1 CTTGTTTCCACTGAGCAGCATCCAAAAACAC-TATCGCTTCTTCTCTTCTCTGATCCATT 59
||||||| |||||||||| ||| |||||||| ||||| ||| ||||||||||||||||||
Sbjct 8 CTTGTTTACACTGAGCAGAATCTAAAAACACTTATCGTTTCGTCTCTTCTCTGATCCATT 67
Query 60 GTTGAAGATGTCGAAGAGAAAGACTAAAGAGCCAAAGGTTGAGAATGTGACTCTTGGACC 119
||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct 68 GTTGAAGATGTCGAAGAGAAAAACTAAGGAGCCAAAGGTTGAGACTGTGACTCTTGGACC 127
Query 120 TACTGTTCGTGAAGGAGAGCAAGTTTTCGGTGTTGTTCACATCTTTGCTTCTTTCAATGA 179
| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 128 TTCTGTTCGTGAAGGAGAGCAAGTTTTTGGTGTTGTTCACATCTTTGCATCTTTCAATGA 187
Query 180 TACTTTCATTCACGTGACTGATCTGTCTGGCAGAGAAACTCTCGTTCGTATCACCGGTGG 239
||||||||||| ||||||||||| || || |||||||||||||| || |||||||||||
Sbjct 188 CACTTTCATTCATGTGACTGATCTCTCCGGTAGAGAAACTCTCGTCCGCATCACCGGTGG 247
Query 240 CATGAAGGTGAAGGCTGATCGTGATGAGTCCTCTCCTTATGCTGCTATGCTTGCAGCACA 299
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 248 CATGAAGGTGAAGGCTGACCGTGATGAGTCCTCTCCTTATGCTGCTATGCTTGCAGCTCA 307
Query 300 AGATGTTGCTCAAAGATGCAAGGAGCTTGGCATCACAGCCATTCACGTGAAGCTCCGTGC 359
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 308 AGATGTTGCTCAAAGATGCAAGGAGCTTGGCATCACTGCCATGCACGTGAAGCTCCGTGC 367
Query 360 TACTGGAGGAAACAAAACCAAGACTCCAGGTCCTGGTGCTCAGTCTGCTCTCAGAGCCCT 419
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 368 TACTGGAGGAAACAAAACCAAGACTCCAGGTCCTGGTGCTCAGTCTGCTCTTAGAGCCCT 427
Query 420 TGCTCGTTCTGGCATGAAGATTGGTCGTATAGAGGATGTGACCCCGATTCCCACAGACAG 479
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 428 TGCTCGTTCTGGCATGAAGATTGGTCGTATTGAGGATGTGACTCCGATTCCCACAGACAG 487
Query 480 TACACGCCGAAAGGGTGGACGAAGAGGAAGAAGACTGTGATTGCACGATGAGGCTCATCA 539
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 488 TACACGCCGAAAGGGTGGACGAAGAGGAAGAAGACTCTGATTGCACGATGAGGCTCATCA 547
Query 540 TCGTC-CAAATGTCCCCTTGAATACCTATG--TATTTTCTTGGGTACACTTCGAAGTTAG 596
|||| ||| ||| | ||||| || | || ||||||||||||||||||||||||||||
Sbjct 548 TCGTTGCAA-TGTGCTCTTGAG-AC-TGTGGGTATTTTCTTGGGTACACTTCGAAGTTAG 604
Query 597 TTTTGTCTCTCTCCAATTTATCTTTTGAGTTGCTTCAAGAATATTATAAGCTGTGTTTTT 656
||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||
Sbjct 605 TTTTGTCTCTCTCCAATTTATCTTTCCAGTTGCTTTGAGAACATTATAAGCTGTGTTTTT 664
> AT3G52580.1 | Symbols: | Ribosomal protein S11 family protein
| chr3:19503223-19504973 FORWARD LENGTH=826
Length=826
Score = 521 bits (282), Expect = 3e-147
Identities = 401/458 (88%), Gaps = 10/458 (2%)
Strand=Plus/Plus
Query 67 ATGTCGAAGAGAAAGACTAAAGAGCCAAAGGTTGAGAATGTGACTCTTGGACCTA-CTGT 125
||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||
Sbjct 102 ATGTCGAAGAGAAAGACCAAAGAGCCAAAGGTTGAGAATGTGACTCTTGGACC-AGCTGT 160
Query 126 TCGTGAAGGAGAGCAAGT-TTTCGGTGTTGTTCACATCTTTGCTTCTTTCAATGATACTT 184
|||||||||||||||||| ||| || ||||||||| |||||||||| ||||| || ||||
Sbjct 161 TCGTGAAGGAGAGCAAGTCTTT-GGAGTTGTTCACGTCTTTGCTTCATTCAACGACACTT 219
Query 185 TCATTCACGTGACTGATCTGTCTGG-CAGAGAAACTCTCGTTCGTATCACCGGTGGCATG 243
||||||||||||||||| ||||||| | | ||||| || ||||| ||||| ||||| |||
Sbjct 220 TCATTCACGTGACTGATTTGTCTGGACGG-GAAACACTTGTTCGCATCACTGGTGGAATG 278
Query 244 AAGGTGAAGGCTGATC-GTGATGAGTCCTCTCCTTATGCTGCTATGCTTGCAGCACAAGA 302
|||||||| || || | | ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 279 AAGGTGAAAGCCGA-CAGAGATGAGTCCTCACCTTATGCTGCTATGCTTGCGGCACAAGA 337
Query 303 TGTTGCTCAAAGATGCAAGGAGCTTGGCATCACAGCCATTCACGTGAAGCTCCGTGCTAC 362
||||||||| |||||||||| ||||| ||||| ||||| || ||||| |||||||| ||
Sbjct 338 TGTTGCTCAGCGATGCAAGGAACTTGGAATCACTGCCATACATGTGAAACTCCGTGCCAC 397
Query 363 TGGAGGAAACAAAACCAAGACTCCAGGTCCTGGTGCTCAGTCTGCTCTCAGAGCCCTTGC 422
||| || ||||| |||||||| || || |||||||||||||||||||| |||||||||||
Sbjct 398 TGGTGGTAACAAGACCAAGACCCCTGGACCTGGTGCTCAGTCTGCTCTAAGAGCCCTTGC 457
Query 423 TCGTTCTGGCATGAAGATTGGTCGTATAGAGGATGTGACCCCGATTCCCA-CAGACAGTA 481
|||||||||||||| |||||||| || ||||||||||| || || |||| | |||||||
Sbjct 458 CCGTTCTGGCATGAAAATTGGTCGCATTGAGGATGTGACTCCAAT-CCCAACCGACAGTA 516
Query 482 CACGCCGAAAGGGTGGACGAAGAGGAAGAAGACTGTGA 519
| ||| ||||||||||| |||||||||| || || |||
Sbjct 517 CCCGCAGAAAGGGTGGAAGAAGAGGAAGGAGGCTCTGA 554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31697746757
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5