BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478491
Length=1418
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11520.1 | Symbols: CYCB1;3, CYC2 | CYCLIN B1;3 | chr3:36253... 1855 0.0
> AT3G11520.1 | Symbols: CYCB1;3, CYC2 | CYCLIN B1;3 | chr3:3625324-3627273
REVERSE LENGTH=1530
Length=1530
Score = 1855 bits (1004), Expect = 0.0
Identities = 1215/1315 (92%), Gaps = 21/1315 (2%)
Strand=Plus/Plus
Query 120 ATCGTCGTGCTCTTGGAGACATTGGAAACATCGATTCTCTTCTTGGAGTCGAAGGAGGAA 179
|||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 211 ATCGTCGTGCTCTTGGCGACATTGGAAACGTCGATTCTCTTATTGGAGTCGAAGGAGGAA 270
Query 180 AGATTAATCGCCCAATTACTCGTAACTTTCGTGCTCAGTTGCTAGAAAACGCACAAGTTG 239
|| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 AGCTTAACCGCCCCATTACTCGTAACTTTCGTGCTCAGTTGCTAGAAAACGCACAAGTTG 330
Query 240 CAGCCGCCGCTAACAATAAGGATCCAATTCTTGATGGAGCTACCAAGAAACAAGAAGTTG 299
|||||||||||||||| |||| ||| ||||||||||||| ||| ||||||||||||||||
Sbjct 331 CAGCCGCCGCTAACAAAAAGGCTCCGATTCTTGATGGAGTTACTAAGAAACAAGAAGTTG 390
Query 300 TAAGAGCGGATCAAAAGAAAGCAAGAGGTGATAAGCGTGAGCCATCAAAACCTATTGAAG 359
||||||||| ||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 391 TAAGAGCGGTTCAAAAGAAAGCAAGAGGTGATAAGCGTGAGCCGTCAAAACCAATCGAAG 450
Query 360 TGATTGTGATAAGTCCTGATACGAACGAGGTTGCAAAAGCTAAAGAGAATGTGTCGTCTA 419
|||||||||||||||||||||| ||||||||||| |||||||||||||| | | |
Sbjct 451 TGATTGTGATAAGTCCTGATACAAACGAGGTTGCTAAAGCTAAAGAGAACAAGAAG---A 507
Query 420 ATA-AGA-ATACTCTTCTGTTCTTGATGCT-----C---GCTGCTTCTAAGACTTTGGAT 469
| | || ||||||||| |||||||||||| | |||||||||||||||||||||
Sbjct 508 A-AGTGACATACTCTTCGGTTCTTGATGCTCGAAGCAAGGCTGCTTCTAAGACTTTGGAT 566
Query 470 ATCGATTATGTGGACAAAGATAATGAACTTGCTGCTGTGGAATATGTAGAGGATATGTAC 529
|| |||||||| |||||||| ||||| ||||||||||||||||| || ||||||||||||
Sbjct 567 ATTGATTATGTCGACAAAGAAAATGATCTTGCTGCTGTGGAATACGTTGAGGATATGTAC 626
Query 530 ACTTTCTACAAAGAAGTTGAGAATGAGAGCAAACCTCAGATGTATATGCATACACAACCT 589
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 627 ATTTTCTACAAAGAAGTTGTGAATGAGAGCAAACCTCAGATGTATATGCATACACAACCT 686
Query 590 GAGATTAATGAGAAGATGAGATCAATCCTTATAGATTGGCTTGTAGAAGTTCATGTCAAG 649
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 687 GAGATTGATGAGAAGATGAGATCAATCCTTATTGATTGGCTTGTAGAAGTTCATGTCAAG 746
Query 650 TTTGATCTCTCTCCTGAGACTCTTTACCTCACTGTCAACATAATTGATCGTTTCCTATCT 709
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 747 TTTGATCTCTCCCCTGAGACTCTTTACCTCACTGTCAACATAATTGATCGTTTTCTTTCT 806
Query 710 CTGAAGACTGTGCCTAGAAGAGAACTACAGCTTGTAGGTGTTAGTGCTTTGCTTACAGCT 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 807 CTGAAGACTGTGCCTAGAAGAGAACTACAGCTTGTAGGTGTTAGTGCTTTGCTTATAGCT 866
Query 770 TCGAAATACGAAGAAATTTGGCCTCCTCAGGTCAATGACTTGGTATATGTGACAGATAAC 829
||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 867 TCGAAGTACGAAGAAATCTGGCCTCCTCAGGTCAATGATTTGGTATATGTGACTGATAAC 926
Query 830 TCCTACAACAGCAAACAGATTCTAGTGATGGAGAAAACCATTTTGGGAAATCTTGAATGG 889
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 927 TCCTACAACAGCAGACAGATTCTAGTGATGGAGAAAACCATTTTGGGGAATCTTGAATGG 986
Query 890 TACTTGACAGTTCCAACACAGTATGTGTTTCTTGTGAGGTTCATTAAAGCCTCGGGTTCT 949
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 987 TACTTGACAGTTCCAACACAGTATGTGTTCCTTGTGAGGTTTATTAAAGCCTCGGGTTCT 1046
Query 950 GACCCGAAAGTGGAGAACATGGTTCACTTTCTAGCTGAGTTGGGTTTGATGCACCACGAC 1009
|||| |||| |||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1047 GACCAGAAACTGGAGAACTTGGTTCACTTTCTAGCTGAGTTGGGTTTGATGCATCACGAC 1106
Query 1010 AGTTTGATGTTCTGTCCTTCCATG-TTGGCTGCATCAGCAGTATACACAGCCAGATGTTG 1068
||||| |||||||||||||||||| ||| |||||||||| || |||||||| || |||||
Sbjct 1107 AGTTTAATGTTCTGTCCTTCCATGCTTG-CTGCATCAGCGGTCTACACAGCAAGGTGTTG 1165
Query 1069 CTTGAACAAGAGTCCTACTTGGACTGATACACTGAAATTCCACACCGGCTATTCCGAATC 1128
||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1166 CTTGAACAAGACTCCTACTTGGACTGATACACTGAAATTCCACACAGGCTACTCCGAATC 1225
Query 1129 TCAGCTCATGGATTGCTCAAAGCTTTTGGCTTTCATTCACTCGAAAGCGGGGGAGAGCAA 1188
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1226 TCAGCTCATGGATTGCTCAAAGCTTTTAGCTTTCATTCACTCGAAAGCGGGGGAGAGCAA 1285
Query 1189 GCTACGCGGTGTGTTTAAGAAGTATTCGAAACTGGGAAGAGGTGCTGTTGCTTTGATTTC 1248
|||||| |||||||| ||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1286 GCTACGTGGTGTGTTGAAGAAGTATTCGAAACTTGGAAGAGGTGCTGTTGCTCTGATTTC 1345
Query 1249 ACCAGCCAAGTGTCTTTTGTCGTCTGCTCCATGAACAAGGCTTGAGAGAAGT-TGTATTG 1307
||||||||||| |||| |||| ||||||||||||||||||||||| ||| | | | |||
Sbjct 1346 ACCAGCCAAGTCTCTTATGTCATCTGCTCCATGAACAAGGCTTGAAAGATGGCTCTCTTG 1405
Query 1308 CAAACTCTGCATCTTAG-TAGA-T-TCTAT-ATCTTTTTATATGTAAAGGTTTTGGTTCT 1363
|||||||||||| |||| | | ||| | ||| |||||||||||||||| ||||||||
Sbjct 1406 CAAACTCTGCATTTTAGATTCTCTATCTTTTATCGTTTTATATGTAAAGGTATTGGTTCT 1465
Query 1364 TGTTGAGAAATGATGTTTCCGTATGAATTCAAAAGTATTATAATGAAACTCTTCT 1418
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1466 TGTTGAGAAATGATGTTTCCGTATGAATTCAAAAGTATTATAATGAAATTCTTCT 1520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69879158640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5