BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg478491 Length=1418 Score E Sequences producing significant alignments: (Bits) Value AT3G11520.1 | Symbols: CYCB1;3, CYC2 | CYCLIN B1;3 | chr3:36253... 1855 0.0 > AT3G11520.1 | Symbols: CYCB1;3, CYC2 | CYCLIN B1;3 | chr3:3625324-3627273 REVERSE LENGTH=1530 Length=1530 Score = 1855 bits (1004), Expect = 0.0 Identities = 1215/1315 (92%), Gaps = 21/1315 (2%) Strand=Plus/Plus Query 120 ATCGTCGTGCTCTTGGAGACATTGGAAACATCGATTCTCTTCTTGGAGTCGAAGGAGGAA 179 |||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||| Sbjct 211 ATCGTCGTGCTCTTGGCGACATTGGAAACGTCGATTCTCTTATTGGAGTCGAAGGAGGAA 270 Query 180 AGATTAATCGCCCAATTACTCGTAACTTTCGTGCTCAGTTGCTAGAAAACGCACAAGTTG 239 || |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 271 AGCTTAACCGCCCCATTACTCGTAACTTTCGTGCTCAGTTGCTAGAAAACGCACAAGTTG 330 Query 240 CAGCCGCCGCTAACAATAAGGATCCAATTCTTGATGGAGCTACCAAGAAACAAGAAGTTG 299 |||||||||||||||| |||| ||| ||||||||||||| ||| |||||||||||||||| Sbjct 331 CAGCCGCCGCTAACAAAAAGGCTCCGATTCTTGATGGAGTTACTAAGAAACAAGAAGTTG 390 Query 300 TAAGAGCGGATCAAAAGAAAGCAAGAGGTGATAAGCGTGAGCCATCAAAACCTATTGAAG 359 ||||||||| ||||||||||||||||||||||||||||||||| |||||||| || |||| Sbjct 391 TAAGAGCGGTTCAAAAGAAAGCAAGAGGTGATAAGCGTGAGCCGTCAAAACCAATCGAAG 450 Query 360 TGATTGTGATAAGTCCTGATACGAACGAGGTTGCAAAAGCTAAAGAGAATGTGTCGTCTA 419 |||||||||||||||||||||| ||||||||||| |||||||||||||| | | | Sbjct 451 TGATTGTGATAAGTCCTGATACAAACGAGGTTGCTAAAGCTAAAGAGAACAAGAAG---A 507 Query 420 ATA-AGA-ATACTCTTCTGTTCTTGATGCT-----C---GCTGCTTCTAAGACTTTGGAT 469 | | || ||||||||| |||||||||||| | ||||||||||||||||||||| Sbjct 508 A-AGTGACATACTCTTCGGTTCTTGATGCTCGAAGCAAGGCTGCTTCTAAGACTTTGGAT 566 Query 470 ATCGATTATGTGGACAAAGATAATGAACTTGCTGCTGTGGAATATGTAGAGGATATGTAC 529 || |||||||| |||||||| ||||| ||||||||||||||||| || |||||||||||| Sbjct 567 ATTGATTATGTCGACAAAGAAAATGATCTTGCTGCTGTGGAATACGTTGAGGATATGTAC 626 Query 530 ACTTTCTACAAAGAAGTTGAGAATGAGAGCAAACCTCAGATGTATATGCATACACAACCT 589 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 627 ATTTTCTACAAAGAAGTTGTGAATGAGAGCAAACCTCAGATGTATATGCATACACAACCT 686 Query 590 GAGATTAATGAGAAGATGAGATCAATCCTTATAGATTGGCTTGTAGAAGTTCATGTCAAG 649 |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 687 GAGATTGATGAGAAGATGAGATCAATCCTTATTGATTGGCTTGTAGAAGTTCATGTCAAG 746 Query 650 TTTGATCTCTCTCCTGAGACTCTTTACCTCACTGTCAACATAATTGATCGTTTCCTATCT 709 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 747 TTTGATCTCTCCCCTGAGACTCTTTACCTCACTGTCAACATAATTGATCGTTTTCTTTCT 806 Query 710 CTGAAGACTGTGCCTAGAAGAGAACTACAGCTTGTAGGTGTTAGTGCTTTGCTTACAGCT 769 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 807 CTGAAGACTGTGCCTAGAAGAGAACTACAGCTTGTAGGTGTTAGTGCTTTGCTTATAGCT 866 Query 770 TCGAAATACGAAGAAATTTGGCCTCCTCAGGTCAATGACTTGGTATATGTGACAGATAAC 829 ||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||||| Sbjct 867 TCGAAGTACGAAGAAATCTGGCCTCCTCAGGTCAATGATTTGGTATATGTGACTGATAAC 926 Query 830 TCCTACAACAGCAAACAGATTCTAGTGATGGAGAAAACCATTTTGGGAAATCTTGAATGG 889 ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 927 TCCTACAACAGCAGACAGATTCTAGTGATGGAGAAAACCATTTTGGGGAATCTTGAATGG 986 Query 890 TACTTGACAGTTCCAACACAGTATGTGTTTCTTGTGAGGTTCATTAAAGCCTCGGGTTCT 949 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 987 TACTTGACAGTTCCAACACAGTATGTGTTCCTTGTGAGGTTTATTAAAGCCTCGGGTTCT 1046 Query 950 GACCCGAAAGTGGAGAACATGGTTCACTTTCTAGCTGAGTTGGGTTTGATGCACCACGAC 1009 |||| |||| |||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 1047 GACCAGAAACTGGAGAACTTGGTTCACTTTCTAGCTGAGTTGGGTTTGATGCATCACGAC 1106 Query 1010 AGTTTGATGTTCTGTCCTTCCATG-TTGGCTGCATCAGCAGTATACACAGCCAGATGTTG 1068 ||||| |||||||||||||||||| ||| |||||||||| || |||||||| || ||||| Sbjct 1107 AGTTTAATGTTCTGTCCTTCCATGCTTG-CTGCATCAGCGGTCTACACAGCAAGGTGTTG 1165 Query 1069 CTTGAACAAGAGTCCTACTTGGACTGATACACTGAAATTCCACACCGGCTATTCCGAATC 1128 ||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 1166 CTTGAACAAGACTCCTACTTGGACTGATACACTGAAATTCCACACAGGCTACTCCGAATC 1225 Query 1129 TCAGCTCATGGATTGCTCAAAGCTTTTGGCTTTCATTCACTCGAAAGCGGGGGAGAGCAA 1188 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1226 TCAGCTCATGGATTGCTCAAAGCTTTTAGCTTTCATTCACTCGAAAGCGGGGGAGAGCAA 1285 Query 1189 GCTACGCGGTGTGTTTAAGAAGTATTCGAAACTGGGAAGAGGTGCTGTTGCTTTGATTTC 1248 |||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 1286 GCTACGTGGTGTGTTGAAGAAGTATTCGAAACTTGGAAGAGGTGCTGTTGCTCTGATTTC 1345 Query 1249 ACCAGCCAAGTGTCTTTTGTCGTCTGCTCCATGAACAAGGCTTGAGAGAAGT-TGTATTG 1307 ||||||||||| |||| |||| ||||||||||||||||||||||| ||| | | | ||| Sbjct 1346 ACCAGCCAAGTCTCTTATGTCATCTGCTCCATGAACAAGGCTTGAAAGATGGCTCTCTTG 1405 Query 1308 CAAACTCTGCATCTTAG-TAGA-T-TCTAT-ATCTTTTTATATGTAAAGGTTTTGGTTCT 1363 |||||||||||| |||| | | ||| | ||| |||||||||||||||| |||||||| Sbjct 1406 CAAACTCTGCATTTTAGATTCTCTATCTTTTATCGTTTTATATGTAAAGGTATTGGTTCT 1465 Query 1364 TGTTGAGAAATGATGTTTCCGTATGAATTCAAAAGTATTATAATGAAACTCTTCT 1418 |||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1466 TGTTGAGAAATGATGTTTCCGTATGAATTCAAAAGTATTATAATGAAATTCTTCT 1520 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69879158640 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5