BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg478496
Length=710
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11550.1 | Symbols: | Uncharacterised protein family (UPF04... 985 0.0
> AT3G11550.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr3:3638195-3639197 FORWARD LENGTH=827
Length=827
Score = 985 bits (533), Expect = 0.0
Identities = 618/659 (94%), Gaps = 5/659 (1%)
Strand=Plus/Plus
Query 1 AAAATGAAAAACGAATCTACCACCATTGATGTCCCTGCAGAATCCAGCTCAGCTATGAAA 60
|||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 65 AAAATGAAGAACGAATCTACCTTCATTGATGTCCCTGCAGAATCCAGCTCAGCCATGAAA 124
Query 61 GGCAAAGCTCCTCTAATCGGTGTGGCTAGAGACCATACCACTAGTGGCTCAGGTGGATAC 120
||||||||||||||||||||||| || |||||||| || |||||||||||||||||||||
Sbjct 125 GGCAAAGCTCCTCTAATCGGTGTAGCAAGAGACCACACTACTAGTGGCTCAGGTGGATAC 184
Query 121 AACAGAGGTCTCTCCATCTTCGACTTCCTCCTCCGTCTAGCTGCCATTGTTGCAGCTTTA 180
|||||||| ||| ||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 185 AACAGAGGACTCGCCATCTTTGACTTCCTCCTCCGTTTAGCTGCCATTGTTGCAGCTTTA 244
Query 181 GCCGCTGCTGCAACTATGGGAACAAGCGACGAGACTCTTCCATTCTTCACACAGTTCTTA 240
|| ||||| || || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 245 GCTGCTGCCGCCACGATGGGAACAAGCGACGAGACTCTTCCCTTCTTCACACAGTTCTTA 304
Query 241 CAGTTCGAAGCTAGCTACGATGATCTACCAACTTTCCAGTTCTTTGTGATTGCCATGGCC 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 305 CAGTTCGAAGCTAGCTACGACGATCTACCAACTTTCCAGTTCTTTGTGATTGCCATGGCC 364
Query 301 CTAGTAGGAGGATATCTCGTTCTGTCTCTTCCAATCTCCGTCGTGACAATCCTTCGCCCT 360
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 365 CTTGTAGGAGGATATCTCGTTCTGTCTCTTCCAATCTCCGTCGTCACAATCCTTCGCCCT 424
Query 361 CTAGCCACCGCCCCAAGATTACTCTTGCTCGTTCTTGACACTGCGGTTCTGGCTTTGAAC 420
|| ||||||||||||||| | |||||||||||||||||||||| ||| ||||| ||||||
Sbjct 425 CTCGCCACCGCCCCAAGACTCCTCTTGCTCGTTCTTGACACTGGGGTCCTGGCGTTGAAC 484
Query 421 ACGGCGGCTGCATCATCGGCAGCAGCAATATCGTATCTAGCGCACAGTGGAAACCAGAAC 480
|||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||
Sbjct 485 ACGGCGGCTGCATCATCGGCGGCAGCAATATCATATCTAGCACACAGTGGTAACCAGAAC 544
Query 481 ACGAACTGGCTCCCCATTTGCCAACAGTTTGGGGACTTCTGTCAGAAATCCAGTGGAGCT 540
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 545 ACGAACTGGCTCCCCATTTGCCAACAGTTTGGAGACTTCTGTCAAAAATCCAGCGGAGCT 604
Query 541 GTTGTCTCTGCCTTTATCTCCGTCGTATTCTTCACCATCCTCGTTGTCATCTCCGGCGTC 600
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 GTTGTCTCTGCCTTTGTCTCCGTCGTATTCTTCACCATCCTCGTTGTCATCTCCGGCGTC 664
Query 601 GCTCTAAAAAGACACTAATCAAAAACCTTATATACATGTGTGCTCATCATTATTGTAAA 659
||||| |||||||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 665 GCTCTGAAAAGACACTAATCAAAA-CCTTATATG--TGTGT--TCATCATTATTGTAAA 718
Score = 73.1 bits (39), Expect = 3e-12
Identities = 44/46 (96%), Gaps = 1/46 (2%)
Strand=Plus/Plus
Query 666 ATCCTTTT-AAAAGGAAAATGAAAGTGTGATTGTAGCTCTGCTTTT 710
||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 779 ATCTTTTTAAAAAGGAAAATGAAAGTGTGATTGTAGCTCTGCTTTT 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34410390695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5